Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------YAB1                                                                             <----------DOF2                                                                         <-------MYC3                                                                         ------->PIF5                                                                         <-------PIF5                                                                         ------->MYC3                                                                        --------->ANAC58                                                                        <---------ALFIN1                                                                        --------->ANAC58                  ---------->DOF2                                       --------->ANAC46                --------->LBD16                                      --------->MYB46(3)          <xxxxxxxxxxxxxxxxsmallRNA(s)                              --------->ANAC58         --------->ANAC46                                           --------->DEAR3(2)         --------->ANAC58                                          --------->RAP2.3(3)         --------->ANAC58                                          --------->PCF2        ------->GAMYB                                             <---------ALFIN1      --------->ZAT14                                           --------->RAP2.3(2)     ----------->RAV1(1)                                        --------->RAP2.6(2)                 <    --------->ANAC46                                          --------->At4g35610                   -    --------->bZIP60(2)                                  <---------ANAC58<-------MYC2               -  ----------->RAV1(1)                           --------->ZAT14 --------->DEAR3(1)                 -- -------->SPL7 ------->GAMYB                 <------NtERF2    <---------At4g35610                <xxx ------>LBD16  --------->ANAC58  --------->ANAC58        <---------ANAC58------->MYC2          ------ ------ANAC58  --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->DEAR3(1)        <----- ------ANAC58  --------->RAP2.6(2)        xxxxxxxxxxxxxxxx>smallRNA(i)<---------ALFIN1        <xxxxxx ----->TGA1a  --------->MYB46(3) --------->ANAC58      ------>NtERF2--------->ANAC58 <---------WRKY12 ------TGA1a--------->MYB52(1)   --------->ANAC46<---------ALFIN1--------->At4g35610 <---------WRKY38(1)   cgtgccacaacacacaaccgcaaagcactaatctcactcaacaaggcctcaacactctgccttgagccgcacccacgcgcttatggttcaacgcgtctgc  13200300                                                            <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            --------->MYB46(3)                                                     <---------ZAT2                                                     <---------At4g35610                                                   <xxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------At4g35610         <----------DOF2                           --------->MYB46(3)              --------->At4g35610         <---------DAG2 <------MYB83               <---------ALFIN1             <-------TEIL    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          ------>NtERF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ---------ALFIN1        <------MYB46(1)        --------->MYB46(3)          <-----------RAV1(2) ------>GAMYB       <------MYB83              --------->At4g35610   <---------At4g35610         <---- ---------->RAV1(1) <------MYB46(1)          --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->MYB46(3)<------ZmHOX2a(1)         <xxxxxxxxxxxxxxxxsmallRNA(s)------>NtERF2            <---- xxxxxxxxxxxxxsmallRNA(i)                --------->YAB1<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ----- --->At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ZAT2 --------->At4g35610      <------- ----At4g35610<---------LBD16        ----------------->AGL2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxsmallRNA(i)<--------P --------->HSFB2a(2) --------->At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(s)   aaccacattagctttaccaggatggtaggctatctccagaccataatcagccaccagctccatccatcgcctctgcctcaggttcagctcttgctgagtg  13200400                                      <---------DAG2                                      <----------DOF2                               ----------->RAV1(2)                               --------->At4g35610                          --------->REM1(2)                          --------->ZAT14                        --------->LBD16                       <---------ANAC46                       <---------ANAC58                                        --------->ARR11(3)                       <---------ANAC55(1)                                     <---------ARR11(3)                       <---------ANAC55(2)                                    --------->YAB1                       <---------ANAC58    --------->ANAC46                  --------->ICU4                      ------>ZmHOX2a(2)   ---------->ID1        --------->ARR11(3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------ARR11(1)                  <xxxxxxxxxxxxxxxxsmallRNA(i)                  <---------ARR14(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   --------->ARR14(2) -----ZAT18       <---------YAB1   <---------ALFIN1             <---------ARR11(3)      ------>NtERF2 -----ZAT14       <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------CCA1(2)<------ZmHOX2a(2) ---->ZAT18     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ARR11(3)   ----------->ARR10 --ANAC46     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------ARR11(3) ---------->DOF2   <xxxxxxx   aacatatacttcagactcttatgatccgtgaacacctgcactttttcgccatagataagacctccaaatcttcaaggcaaagatcatcgcagccatctcc  13200500                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                    --------->ANAC46                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   ----------->RAV1(1)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                ------>MYB46(1)                 ------>MYB83     --------->ARR14(2)                ------>MYB83                    -------->P<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <-----------GT1                    --------->AtMYB61  <---------ARR14(2)        --------->YAB1                       --------->MYB46(3)  <---------ZAT14 xxxxxxxxxxxxsmallRNA(se3)        --------->YAB1------>MYB46(1)  --------->ZAT14   aaatcgtgagtaataaccttcccacagtacatcaaaacataacccaaaccaactctcgaggcatcagtatacaccatgtaaggctctccatgctcttgta  13200600                                       --------->ANAC58                                       --------->ANAC58                       --------->ARR11(3)                       <---------ARR11(3)                --------->ANAC46       --------->ANAC46               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   --------->MYB46(3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               --------->ANAC46              xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  ------>MYB83            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  --------->ANAC58           <---------ZAT18             <---------ANAC55(2)         --------->ANAC58           --------->ZAT18             --------->ANAC55(2)       --------->AtMYB61           <---------ZAT14         <---------ANAC58              <---------ALFIN1           --------->ZAT14   ------>ZmHOX2a(1)                  --------->MYB46(3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  --------->YAB1       xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <---------ATHB12     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)              --------->ANAC58       <---------HSFB2a(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               --------->ANAC58       --------->HSFB2a(1)    --------->ZAT6  xxxxxxxxxxxxxxxx>smallRNA(i)  ------>ZmHOX2a(1)------>MYB46(1) ------>ZmHOX2a(1)    xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------KAN4(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxx>smallRNA(i)     <---------ANAC58  <---------ALFIN1  ---------->DOF2          <----   atgctaacactggtgtactcgtcaacatctccttcaggcttacgaaactctcctcgcactccaatgaccacccaaaaggaacatccttccctgttgatat  13200700                                                                         <---------At4g35610                                                                       <---------RAP2.6(2)                                                                      --------->RAP2.6(3)                                             <-----------HVH21     <----------DOF2     --------->ATHB12                                          <---------ANAC58       xxxxxxxxxxxxxxxx>smallRNA(s)                                          <---------ANAC58     <---------ANAC46 <---------ANAC58 <---------ANAC46                         <---------ANAC46     <---------ANAC58 <---------ANAC58 <---------ANAC58                    <---------MYB52(1)        <---------ANAC58 <---------ANAC46 <---------ANAC58      <---------MYB52(1)---------->ID1   <----------DOF2--------->At4g35610 -------RAV1(1)       *TSS <XXXXXXXXXXXXXXXXXXXXMIR841  <---------MYB52(1)<---------DEAR3(1)  <------   gttgcgtttttggtgtcttaagtcccttagttttgagtcgtttgtcgtgtcatagtccgtcttttgcgtcttttcggctgtgtcttgagtcatttgcagg  13200800                                                                                           ------->TEIL                                                                                      --------->YAB1                                                                                     <------ZmHOX2a(2)                                                                                     ================                              --------->HSFB2a(2)                                   <---------ARR11(3)                          <----------DOF2                                           --------->ARR11(3)                         <---------ANAC58                                        --------->LBD16                 --------->ANAC58                                               <---------LBD16                 --------->ANAC58                                              <---------LBD16              ----------->HVH21                                          <---------HSFB2a(2)---------          <-----------GT1<---------ANAC58                --------->ARR14(2)  --------->ARR14(2) ---TOE1(2) --------->ANAC46 <---------LBD16<-------TEIL <---------ARR14(2)  <---------ARR14(2)   ttttaggtgtttaaacgggacgcgaatgctttcgggacttatcaggctcatttggaccagaaacgacgatggaatcgagaaaccgggatcatgaactcta  13200900                                   ------>ZmHOX2a(2)         >>>>>>>>>MYB98                          --------->ZAT2                    ------>MYB46(1)                          <---------ZAT2                    ------>MYB83                          --------->O2                    <---------MYB59                          =======================================MYC_MYB                          <---------TGA1a                 <---------MYB46(2)              ------>ZmHOX2a(2)  <---------ARR14(2)       <---------MYB111(1)           =================HOX2a_HOX2a                   <---------MYB111(2)           ===============================HOX2a_HOX2a    --------->ANAC46           <------ZmHOX2a(1)--------->ALFIN1            -------->P         <---------TOE2(2)--------->TGA1a               ------->TEIL        <-----------RAV1(2)         <---------TOE1(2)<---------O2               --------->At4g35610   <---------MYB52(1)       --------->TOE2(2) <---------TOE1(2)   --------->LBD16--------->MYB52(1)                  <----   <------ZmHOX2a(2) <------ZmHOX2a(2)    <------ZmHOX2a(2)--------->MYB55(1)          ------>ZmHOX2a(2)   ===============HOX2a_HOX2a    --------->ARR14(2)  <---------At4g35610  <-----------TGA1     ------ =================HOX2a_HOX2a <------NtERF2 --------->HSFB2a(2)           <-----------HVH21   <------ZmHOX2a(2) >ZAT6 --------->TOE1(2)<-----------RAV1(2) <---------HSFB2a(2)          --------->ANAC46    --------   gatcgatcacctaggatcgatcgatcccaggtggggatcgatcgatccagaagtcatctacctaacaaaacccatccgtcagggagggatcgatcgatcc  13201000                                 <---------ARR14(2)                 --------->TOE1(3)                                 --------->ARR14(2)                 --------->TOE2(3)        ------>NtERF2   --------->TOE1(3)                        <-----------GT1       --------->MYB46(3)      --------->LBD16                --------->YAB1       --------->DEAR3(1)------>ZmHOX2a(1)       --------------->AGL15             <---------AHL20(2)    <---------ETT(2)    --------->TOE2(3) <---------MYB52(1) <---------YAB1        <---------AHL20(1)   <---------HSFB2a(2) ==========================================MADS_MADS         --------->AHL20(1)   --------->HSFB2a(2) ----------------->AG      <---------------AGL15             --------->AHL20(2) -----ALFIN1           ----------------->AGL1   <-----------------AGL3            --------->AHL20(2) --->MYB46(3)     <---------MYB52(1) <-----------GT1        --------->AHL20(2)    <---------AHL20(2) ->ARR14(2) ----------->HVH21<---------LBD16    <-----------------AGL2      --------->YAB1         <-   accctctcgacgaccagaccggttttccttaaccggatttatctgttttttctgtaattggatataataacctcagaaacataattttatttcgacgttt  13201100                      <---------DAG2                <XXXXXXXXXXXXXXXXXXXXMIR825 --------->ANAC58          <----------DOF2        <----------DOF2                                               ------    --------->ANAC46  <----------DOF2       --------->ANAC58                               <---------ARR11(3)  <-----------GT1    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <----------DOF2   --------->ARR11(3) ---------DOF2  --------->HSFB2a(2)   <----------DOF2            <-------TEIL    <----------DOF2   --   tcttttacgcttctttttctgcaactttttgagagctttcctttgtaagcacatttgggattagagattcatacactttgacactttggagaagatttat  13201200  Previous    Next  AGI:  At3g32223.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 2.8e-124 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus) Range:  from: 13198712    to: 13200722    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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