Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->HSFB2a(2)       <---------ZAT14                         <---------HSFB2a(2)       --------->ZAT14                --------->YAB1                     ------>ZmHOX2a(2)             <---------ZAT18 <---------ANAC58               <-- -------->ANAC46   --------->ARR11(3) <XXXXXXXXXXXXXXXXXXXXMIR845A <---------ANAC58          <------- >ARR14(2)         <---------ARR11(3) <---------AHL20(2)          --------------->AtSPL8    <-------- -ARR14(2)    --------->ALFIN1       --------->AHL20(2) --------->GLK1(2)      ------>ZmHOX2a(1)  <--   ctactcaacttcaagagtgtcgatcttagggaagtcatattaaatggtatcagagcacattctgaagttgagtactccatcctttcatcacttcatcatt  13168900                                                                                         <---------ICU4                                                                                        <---------AHL20(2)                                                                                        --------->AHL20(2)                                                                                        <---------ATHB51                                                                                    <---------YAB1                                                                           <---------AHL20(2)                                                                           --------->AHL20(2)                                                            --------->At4g35610  <---------YAB1 -------ANAC58                                              <---------At4g35610<---------ICU4  <----- --ICU4        <---------ICU4              --------->At4g35610            --------->AHL20(2)   <----- -YAB1      --------->YAB1                 <---------At4g35610 <-----------HVH21--------->AHL20(2) -------ANAC58<---------YAB1     --------->YAB1  <----------DOF2       --------->ATHB12 --------->ICU4   tcgttccattctattcatcatttcattttgcccattcatcttctcatctgtcttttcatcttcgctgtcatcttgatttaatttttataaataattagct  13169000                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                   <------ZmHOX2a(1)                                     <---------ICU4                               --------->TOE1(2)                                         <--------ATHB1                             ------->TEIL              <---------AHL20(2)                --------->ATHB51                         ------>ZmHOX2a(2)--------->ZAT14    <---------YAB1              --------->AHL20(2)                         =================HOX2a_HOX2a  --------->AHL20(2)                <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        --------->AHL20(2)                --------->ICU4        <-----------GT1 <---------At4g35610    <---------ARR11(3)                     --------->YAB1    <---------AHL20(2)  --------->At4g35610    --------->ARR11(3)                    <---------AHL20(2)   --------->AHL20(2)  --------->ARR14(2) <---------ZAT14  <---------AHL20(2)       --------->AHL20(2) ----ANAC58            <---------AGP1     --------->ZAT18  --------->AHL20(2)    --------->ATHB12 ----ANAC58            <---------ARR14(2)--------->ALFIN1 <---------AHL20(2)    <---------YAB1    <--   tgcgataaaattacaaaatcaattggatctgaatctaggacgagtgtagtatcttataaaattatttttggaatttttgagcatgatttaataatttatt  13169100                                                                                xxxxxxxxxxxxxxxxxxxxx        --------->At4g35610                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      ------>ZmHOX2a(2)                                                 --------->MYB55(2)    --------->ARR11(3)                                                  --------->MYB111(2)    <---------ARR11(3)                                                  --------->MYB52(2) -AHL20(1)                                                            <---------ANAC46             <- -AHL20(2)                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >AHL20(1)                                            ----------->HVH21 <---------MYB46(3)     ------ >AHL20(2)             ----------->GT1    <---------YAB1         <-----------RAV1(1)       --------->MYB46(3) -------YAB1    --------------->AGL15 --------->ARR14(2) <---------ANAC46<-------GAMYB----------->GT1   atgttcgatcttctgcctctgtttttagtaaaacgtttagtattctccttgaactagtgactggtttgtgttgtttgttggcagaaaatggtgacaaccg  13169200                                                                     <---------WOX13(1)                                                                    <------------CBF                                                                   -------->HAHB4                   -                                                                   <---------ICU4              <-----                            ------>MYB83                           --------->ATHB12            ------                            --------->ANAC58                       <--------ATHB1              ------                            ------>MYB46(1)                        --------->ATHB51           -------                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <---------YAB1             <-------                            --------->ANAC58                      <---------ATHB51         <---------AHL20(2)                            --------->ANAC46                      <---------AHL20(2)       --------->AHL20(2)       ---------->DOF2 <-----------GT1                            --------->AHL20(2)      <---------ATHB12 xx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     ----------->GT1         --------->ANAC58< --------ATHB12 <---------ZAT6                            ----------->GT1           --------->ANAC58- ->GAMYB        ----------->GT1                  <---------DAG2   --------->ICU4    *TSS--------->WOX13(1)   aatcaagctcaaagaagagtgttaataaccaagccatcatcgatgctatcaccttacaaatggagaaaataattgatgccaaacttaagccaattaatga  13169300      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------->ZAT2 ----ICU4 --->YAB1         --------->ANAC58 -->HAHB4         --------->ANAC58 -->ICU4        ---------->DOF2                   <------ZmHOX2a(1)                             <---- --TOE2(3)---------->DOF2              --------->YAB1                                       --------- ---------At4g35610      --------->LBD16   <---------LBD16     ---------->DOF2          <------ZmHOX2a(1) -------->At4g35610    <---------LBD16<---------YAB1       --------->YAB1          <---------ATHB12 <   tcagcttagggcgaaagggaaagcacccggtgaacaagttatcatctcggaaggagagcaatcttgaaaggagatggatagtcgaatcaaggaccctagg  13169400                                                                              <-----------HVH21                                                                             --------->ALFIN1       <                                                       --------->LBD16     <---------ANAC58         <                                                     <---------LBD16       <---------ANAC55(2)  -----                                                  ----------->HVH21        <---------ANAC46    <-----       <---------WOX13(1)                       <---------At4g35610        --------->O2       -------     ------>MYB46(1)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ANAC58   -------     ------>MYB83                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ANAC55(1)<------   <---------MYB59                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ========================bZIP_DOF --ZmHOX2a(1)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------TGA1a   -------- >TOE1(2)      ---------->DOF2 --------->ZAT14  --------->At4g35610        --------->TGA1a   <------- ------ZmHOX2a(1)        --------->YAB1 <-----------HVH21                  <---------O2 ---------->DOF2   aaggacctaattgacccaaacgctcaagaatactacagccatggtcactcatctcaccggagtaatcggagaccaagacgtgtgagagaagaaagagatc  13169500         --------->GLK1(2)              <----------DOF2         <-----------ARR10             <---------DAG2         <---------ARR14(2)      <---------ARR14(2)         --------->ARR11(3)      --------->ARR14(2)         --------->ARR14(2)    <---------HSFC1(2) ---------TOE2(3)              --------->HSFC1(2) ---------YAB1                 --------->HSFB2a(1)           --------->LBD16 ->ZmHOX2a(2)                 <---------TOE1(3)        <---------KAN4(1) -ZmHOX2a(2)                  <---------TOE2(3)        --------->KAN4(1) -->ARR11(3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>ZmHOX2a(2) -->AGP1<---------GLK1(2)  <---------REM1(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---ARR11(3)      <------NtERF2<---------HSFB2a(1)    <---------KAN4(2) ->GLK1(1)       <---------MYB46(3)    --------->AtMYB61   <---------LBD16        ---------->DOF2 --GLK1(1)      <---------RAP2.6(2) <---------ALFIN1 --------->YAB1  <---------ARR14(2)   ttatggttgagaatcttggtggctataagatgaaggttccacctttccatgggaagaatgatccggatgcctatttggattgggaaaagaaaatggaact  13169600                                              ------>NtERF2                                              <------NtERF2                                              --------->LBD16                                             --------->RRTF1(2)                                             --------->ANAC46                                             --------->RAP2.6(2)                               ------->GAMYB --------->RAP2.3(2)                             <---------At5g28300   ------->GAMYB                            <---------DOF5.7(2)  --------->At4g35610                          --------->DOF5.7(2)--------->DEAR3(1)                         --------->TOE1(3)  <------NtERF2                         --------->TOE2(3)  <---------LBD16                        <---------ANAC46    --------->RAP2.3(1)                            <---------                       <---------TOE2(3)   <---------ORA47(2)                       <------ZmHOX2a(2)                      <---------TGA2(2)    <---------RAP2.3(1)               <------MYB46(1)                      ------>NtERF2----------->HVH21  --------->GLK1(1)      <------MYB83  <---------                     --------->WRKY12      <---------ATERF1(1)               <---------MYB46(3)                     ----------->TGA1     <---------DEAR3(1)                <---------MYB46(3)                     ----------->HVH21  <-----------HVH21                   --------->MYB55(2)                   --------->At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(i)         --------->MYB111(1)                   <---------At4g35610<---------AtMYB61  --------->TOE1(2)  --------->MYB111(2)                 <---------ZAT14 <---------ANAC46<---------At4g35610        <---------AtMYB61       -   tgtgttcaattgtcaaaactacgctgacgttaaccgcgtgaaggtcgccgcaactgaattctacgactatgctcttagttggtgggatcaaatcgtcact  13169700      <---------ANAC46     <------NtERF2     --------->RAP2.3(1)    <---------ORA47(2)    <---------ERF1    <---------RAP2.3(1)    <---------DEAR4(2)                                                     --------->ANAC46    <---------ATERF1(1)                                         <------MYB46(1)    ------>NtERF2                                               <------MYB83   <---------RRTF1(3)                                          <---------TOE2(2)   <---------RAP2.3(2)                                         <---------AtMYB61   <---------RAP2.3(3)                                         <---------TOE1(2)   <---------RAP2.6(2) ------>ZmHOX2a(1)                      <------NtERF2--------->ANAC58   <---------DEAR3(1)<xxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------ANAC58              <---------ZAT18 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------HSFC1(2)          --------->ANAC58 --TGA1         --------->ANAC58               --------->HSFC1(2)       xxxxxxxxxxxxxxxx>smallRNA(i) --HVH21      ---------->DOF2   --------->TOE2(2)           <---------ANAC58        --------->YAB1 -------->ANAC46--------->ANAC58--------->TOE1(2)           <---------ANAC46       <---------YAB1   acaaggcggcgtaatggaaagcatcctattgaaacatgggaagggttgaagcttctcatgaggcgtaggtttgtgccaagccactatcatcgtgaacttc  13169800  Previous    Next  AGI:  At3g32195.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 8.8e-102 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) Range:  from: 13169284    to: 13174048    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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