Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                        <---------WOX13(1)         <-                                                                      --------->ATHB12--------->GLK1(1)                    <---------ATHB12         --------->MYB52(1)  --------->ICU4      <---------ARR11(3)                  --------->WOX13(1)        ---------->DOF2 ------->GAMYB            --------->ARR11(3)               ------->TEIL      ---------->DOF2      <-----------GT1<---------AHL20(2)       -------   gagagatttaaaacatgaatcaatgagttagagatgaaagagatagcaaagggattttacaactgcaatatttgattgattttttaagaactccaagtta  13130800         ----------->HVH21      --------->ATHB12                          --------->ANAC55(2)     <---------YAB1                             ----------->GT1--------->ARR11(3)   --------->YAB1              <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------ARR11(3)  <---------AHL20(2)         <---------RVE1(1)  --------->ANAC58                     <---------ARR14(2) --------AHL20(1)           --------->ARR11(3)  --------->ANAC58        --------->YAB1--------->CCA1(2) ------->AHL20(1)           <---------ARR11(3)  --------->ANAC46  <----------DOF2    --------->ARR14(2) ------->AHL20(2)        <---------TOE2(3)      <---------ANAC55(2)     --------->AHL20(2) --------ARR11(3) <---------ANAC58              --------->ANAC55(1)  --------->YAB1 <xxxxxxxxxxxxxxxxsmallRNA(i) ------->ARR11(3) <---------ANAC46 <-----------GT1        --------->AHL20(2)       ----------->ARR10 --------AHL20(2) <---------ANAC58<-----------GT1         --------->AHL20(1)  --------->DAG2        < -->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------AHL20(2) ---------->DOF2       <-   atatattatcattgacagaggcgtatcaaggattttttacccagttcaaaacgtaacaaataaaatgtctttaataaaaaaaagggagatttgcaaaact  13130900                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <---------At5g28300                                                                                    <-----------GT1                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                 ------>MYB46(1)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 ------>MYB83                                                                                <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                               <---------MYB59                                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------ICU4                                                    <xxxxxxxxxxxxxxxxxsmallRNA(le3)            <--------HAHB4         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxx            --------->YAB1         <-----------RAV1(1)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------ATHB12       <---------TOE2(3)             --------------------->WRI1 <xxxxxxxxx       ------------>CBF          <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      <-----------GT1         <----------DOF2         <-----------GT1  ------------>CBF<xxxxxxxxxxxxx ----------DOF2      ------------>CBF             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxx --------DAG2       ----------->RAV1(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx   acctttttttacaatcattttgcaacaatagccttttatgttgtccatttttaaaaataccccttcccttgaacacaatgaccaaattaccctcatctaa  13131000           --------->YAB1           --------->AHL20(2)      ------------>CBF     --------->ANAC58     --------->AtLEC2                                                             >>>>>>>>>E2Fc     --------->ANAC58                                                             >>>>>>>>>E2Fd     --------->ANAC46                                                            ------>NtERF2 xxxxxxxxxxsmallRNA(si3)                                                         --------->LBD16 xxxxxxxxxxxsmallRNA(le3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxsmallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxsmallRNA(l2)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxx>smallRNA(fl3)                                            --------->LBD16   --------->ANAC46 xxxx>smallRNA(fl3)                                  <---------AHL20(2)--------->AHL20(2) xxxxsmallRNA(le3)                                   --------->AHL20(2)<---------AHL20(2) xxxxxsmallRNA(le3)                                 <---------AHL20(2)--------->AHL20(1) xxsmallRNA(se3)                                    --------->AHL20(2)<---------AHL20(1) xsmallRNA(i2)                                      <---------AHL20(1)--------->AHL20(2) xxxsmallRNA(si3)                                   --------->AHL20(1)<---------AHL20(2) >smallRNA(fl3)                              <------NtERF2    <------NtERF2     --------->ANAC58 xxxxxxxxxxxxxxsmallRNA(i2)                <----------ID1     ------>NtERF2 <-----------GT1 xxxxxxxxxxsmallRNA(i2)      <-----------GT1------>NtERF2    --------->ANAC46   <<<<<<<<<<E2Fa xxxxxxxxxxsmallRNA(le3)<---------AHL20(2)---------->ID1     --------->ANAC58   --------->ANAC58 >smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ANAC58  <---------LBD16   tagaaacatgcaattaaaaactgaatttttttcaccaagtttttggcgccaaaatttatttgtccgccaaaatttatttttcccgccaaatttttgggtc  13131100                  <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->AHL20(1)                 <---------ATHB12                   --------->ARR11(3)             ------------>CBF      --------->AHL20(2)            ------>NtERF2          <---------AHL20(2)     <-----------GT1            --------->LBD16        --------->AHL20(1)  <---------AHL20(2)           --------->ANAC46       --------->AHL20(2)<---------AHL20(1)          <---------LBD16  --------->ANAC58         <---------ARR11(3)                              <    --------->AHL20(2)     --------->ANAC46 --------->ANAC58<---------ANAC58                <--------    <---------AHL20(2)     --------->ANAC58 --------->ANAC46--------->ANAC55(2)      --------->AHL20(2)   --------->AHL20(2)  <-----------GT1      --------->ANAC58<---------ANAC58   --------->At4g35610  -   caaaaaaaaatttccgccaatcttttttctcgccaaaaaaattatcaagccaaatatttttttcgtaacaaattttttctcagccaaaaaaatgctttta  13131200                                                                                      <---------GLK1(1)                                                                                    =================                                                                                    <------ZmHOX2a(1)                                                                               ------>MYB83   <------                                                      <---------AHL20(2)       ------>MYB46(1)-------                                                     --------->AHL20(2)        -------->P     -------                                                 ----------->GT1              ----------->RAV1(1)                                              <<<<<<<ZML2                    --------->AtMYB61<------                                           --------->HSFB2a(2)            --------->REM1(1) --------- ---------ARR11(3)         <-------TEIL    --------->HSFC1(1)         <---------------------WRI1 --DOF2           --------->ARR11(3)       <---------HSFC1(1)<---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -------->ARR11(3)<---------ARR11(3)       <---------HSFB2a(2)        --------->At4g35610 -----------   aaaatccttgtaaaattgattatcttggattcatcttgctcatttctagaacggtttaaattgattatcgactgctacaccaacaaggacatcccagata  13131300          -------->P       --------->At4g35610       --------->ZAT2       <---------At4g35610  --------->ETT(2)                                                                           <-------  ------>ZmHOX2a(2)                           <------ZmHOX2a(1)                              -------- <---------WOX13(1)                     --------->DAG2                                    --------->ARR14(2) ========HOX2a_HOX2a                   ---------->DOF2                                    <---------ARR14(2) ---ARR11(3)                       --------->HSFB2a(2)                                    <---------ARR11(3) -->ARR11(3)                       <---------HSFB2a(2)            --------->TOE2(3)<---------ANAC58 -->ARR14(2)                    <---------ARR14(2)            --------->YAB1       <---------ANAC58 ---ARR14(2)                    --------->ARR14(2)         --------->WOX13(1) <---------ANAC58     <- >LBD16<---------ZAT2           --------->GLK1(2)   <-----------GT1           <---------ANAC58     <- ------>AGL3                   <---------GLK1(2)  <---------AHL20(2) ---------->DOF2     <------ZmHOX2a(1)   ttgatcgacagctacccatttggatgttatggagaatctggaaaagcaggaatttatcagtctatcaacataaaagcagtacttggcgagaggattttat  13131400          -------->HAHB4         --------->ICU4         <---------ATHB12                                                       --------->YAB1        <---------TOE2(3)                                                      <---------ATHB12    <-------GAMYB                                                            --------->WOX13(1)  ----   <---------ZAT6                                                          --------->ZAT14       ---- --AHL20(2)                <----------DOF2                                 --------->ZAT18       <--- ->AHL20(2)       ------->GAMYB                                    --------->ANAC58              <--- --------YAB1   <---------At4g35610               --------->MYB46(3)       <---------ZAT18  --------- --------TOE2(3)--------->At4g35610          --------->ANAC46      --------->ANAC58     --------->ANAC46   taagactgttaatgatgcaactgaatgggctttagtctggactatcgactcaactactaacattcaaacaagacaagtgcaatcaagaacacatcattca  13131500  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <------MYB83 ----->At4g35610                                                                  ----------->GT1 ----->ZAT2                                                                       <------MYB46(1) ------ZAT2            ----------->GT1                                          <--------P      >>>>> ------At4g35610  <------ZmHOX2a(1)                                       --------->ANAC58      <<<<< >WOX13(1)  ---------->DOF2                                               --------->ANAC58     ------   gcttggaccagaccgaaagaggacttcgtaaaatgcaacttcgattgcaagttttcaaaaaacaacaatgtctctcaagcaggttggataattcgagatt  13131600                                                                                                  ---                                                                                                 ----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              =======                                                                                              <------                                                                                              =======                                                                                              -------                         <------NtERF2                                                        -------                 --------->At4g35610                                                          =======                 <---------At4g35610                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ANAC58                                            ============================             --------->ANAC46                                            <----------DOF2      <------    <---------ANAC58   <---------ANAC58                        <---------ARR14(2)             <------    <---------ANAC46   <---------ANAC58                        --------->ARR14(2)             -------    <---------ANAC58   <---------ANAC46                        --------->ARR11(3)            -------- >>>>>>>>>>>>LFY <---------ZAT2                                <---------ARR11(3)           <-------- <<<<<<<<<<<<LFY --------->ZAT2     ----------->RAV1(1)    --------->At4g35610            ----------- --->GLK1(2) --------->ANAC58---------->DOF2               <---------At4g35610         --------->AtLEC2   ccaatggcgttttccaagcagcagggcgtagtaaagggcaacattgttcgatgtctatggaagcagaacttcaagctttggtaatggcgatgcaacacgt  13131700  Previous    Next  AGI:  At3g32130.1    Description:  similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G25270.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1) Range:  from: 13131192    to: 13131878    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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