Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->ARR11(3)                                                        <---------ARR11(3)                    -------                                                        <---------AHL20(1)                    <------                                                  --------->YAB1               --------->ARR11(3)                       --------->ANAC46  --------->AHL20(1)                    --------->AHL20(1)                       --------->ANAC58  <---------ARR11(3)       ---------->DOF2             <------        --------->ANAC58                 <---------AHL20(1)  --------->AHL20(2)<---------AHL20(1)  <-        --------->ANAC58                 --------->ARR11(3)  <---------AHL20(2)<---------ARR11(3)  --      <---------ALFIN1 --------->ANAC58 --------->RVE1(1)<---------CCA1(1)    --------->CCA1(1)<----- --------->ARR14(2) <---------ATHB12    --------->CCA1(1)<---------RVE1(1)    --------->RVE1(1)<-----   cagtattcccacccatgttccaaacaagcaaatttttggataatatcttgagtcataagatatttaaataaagcttgataatatcttgagttataagata  13108400                               <------ZmHOX2a(1)                            <---------HSFC1(1)                            --------->HSFB2a(2)                            <---------HSFB2a(2)                       <--------ATHB1                              <---------YAB1    ---------->DOF2    -------->HAHB4                            --------->YAB1 -->ARR11(3)           <---------ICU4                            -------->HAHB4 ---AHL20(1)           --------->YAB1                           <---------YAB1 <------ZmHOX2a(1)    - ---ARR11(3)          --------->ICU4                         <---------------AGL15                  < --------AHL20(2)     <---------ATHB12                      <-----------------AGL3              ----- ------->AHL20(2)     <---------ATHB51               <------ZmHOX2a(1)   <---------YAB1   ----------- ----CCA1(1)        --------->YAB1             <---------YAB1--------------->AGL15   <------ZmHOX2a(1) ----RVE1(1)    <------ZmHOX2a(1)         <---------ZAT6    ----------------->AGL3   <---------------   tttaaataaagaagattaggactaataattctaggagttatctagagttatgttaggagttatctaattatagttctaataggattaggagatggtatca  13108500                              <---------MYB59                             --------->TGA2(1)                             <---------TGA2(1)                             --------->bZIP60(1)                                       --------->HSFC1(2)                             <---------bZIP60(1)                                       <---------HSFB2a(1) --------->CCA1(2)        ----------->HVH21                                            --------->HSFB2a(1) -------->ARR11(3)      --------->ALFIN1               <---------WOX13(1)              <---------HSFC1(2) ---------ARR11(3)      ----------->GT1              --------->ATHB12                 <---------KAN4(2) ----->DOF2         ---------->DOF2           --------->ANAC55(2)          <---------GLK1(2) >GT1         --------->At4g35610             <---------ANAC55(2)          --------->ARR11(3)------>ZmHOX2a(1) ------WRI1   <---------At4g35610             <---------ANAC55(1)        ----------->ARR10  ---------   aagatatatataagggagatgtcaaagtgtgacataacttatgagattaagtgtttgattgagagattgagagtttagattttgagagaattttcctaaa  13108600                                                         <------MYB83                                                         <------MYB46(1)                                                        --------->MYB59                <----------DOF2                       <XXXXXXXXXXXXXXXXXXXXMIR845A             --------->GLK1(2)                     --------->ARR11(3)           <---------RVE1(1)                       --------->AHL20(1)          --------->ARR11(3)                    --------->AHL20(2)  ---------->DOF2  <------------------------ANAC81 <---------AHL20(1)             ---------->DOF2 >TOE2(3) <---------ARR11(3)        <---------ICU4 <---------ARR11(3) <---------MYB52(1)   ctaataaagagagatattctttgtttttgtgttcttaatctttccttcaaaaaaatatttggtatcagagccgtttctaaaatcgaaagaagaaaacgtt  13108700                                                                      <---------At4g35610                                                                  <-----------HVH21                                        ------->GAMYB          <---------bZIP60(2)                  <---------ARR11(3)  ------>MYB46(1)          <---------ANAC58                  --------->ARR11(3)  ------>MYB83             <---------ANAC46                  <---------ARR14(2) ----------->RAV1(1)       <---------ANAC58          *TSS           --------->TOE1(2)         --------->MYB52(1)        <---------ANAC55(1)    --------->WOX13(1)           --------->TOE2(2)       --------->MYB46(3)          --------->ANAC55(2)  ------------>CBF     --------->YAB1   <-----------RAV1(1)                      <---------ANAC55(2) --------->ANAC58    <---------ATHB12<------------CBF--------->AtMYB61       <---------MYB52(1)     --------->ANAC58   tttcaaatcaaaacatgggagatattgttgcagtgaaaccaacagagaatggaccatcatccattacgtgtcatatgcttaacttaagcaattacacagt  13108800                                                                      <----------DOF2                                                                    ------>MYB83                                                                    ------>MYB46(1)                                                                  ------->GAMYB                                                                  --------->DEAR3(1)                                                                  --------->DREB2C(2)                                                                 --------->MYB46(3)                                                                 --------->DEAR3(2)                                                                --------->MYB52(1)                                                               --------->MYB52(1)                                                              --------->MYB46(3)                                           <------ZmHOX2a(1)<<<<<<<ZML2                                           ===================HOX2a_HOX2a--------->YAB1                               --------->YAB1            <---------HSFB2a(2)             <---------ANAC58                            <---------GLK1(1)            ------>ZmHOX2a(1)      ------->TEIL        <                    --------->ZAT6    <---------REM1(1)  --------->HSFB2a(2) ----------->ARR10      <                <---------MYB52(2)   --------->ARR11(3)------>ZmHOX2a(2)<---------YAB1   <---------ANAC58   ttgggcaattcgtatgcaaataacacttggaattcataagatgtaggagaccattgatcctagaacaaccgactttgataagaacctcatggctaggggt  13108900                     --------->At4g35610                                                            -                   <---------GLK1(2)                    ---------->DOF2                          ----         <---------ATHB12                  --------->GLK1(2)                                     <--- ---------ANAC58<---------HSFB2a(2)        --------->ARR14(2)                                   ----- ---------ANAC58--------->HSFB2a(2)        <---------ARR14(2)                ---------->DOF2  <------ZmHOX2a(1)   ttacttgtccaatccataccagaagctctcacattacaagtagggaatctacaaactgcaaaggaagtatgggactcgataaagactagacatgtaggag  13109000                                       <---------ARR11(3)                                       --------->ARR14(2)     ----------->GT1                   <---------GLK1(2)    ----------->GT1                    <---------ARR14(2) --------->DOF2                        --------->ARR11(3) ----->RAP2.3(1)               --------->MYB52(1)          ---------->DOF2 ---NtERF2                  --------->TOE2(3)   --------->ICU4             <---------WOX13(1) ---->At4g35610             --------->TOE1(3) ---------->DOF2    --------->At4g35610   ccgaaagagttaaataagctagactacaaaccctaatggcagattttgaaaagatgaagatgaaagaagcagagaagattgatgacttcgctagaagact  13109100                      --------->ANAC58                      --------->ANAC58                     ------->TEIL                    <---------ALFIN1                   --------->At4g35610                   --------->ZAT14               <---------ARR14(2)               --------->ARR14(2)               <-----------ARR10               --------->GLK1(2)                                 --------->GLK1(2)               --------->ARR11(3)                              --------->HSFB2a(1)               <---------ARR11(3)                              --------->HSFC1(2)           <-------TEIL        <---------ETT(2)           --------->ICU4              <---------HSFC1(2)   ---------->DOF2        --------->ETT(2)           <---------YAB1              <---------HSFB2a(1)--------->ANAC58      --------->MYB52(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                --------->ANAC58   ctcagaactatcgacaaaatctgcaccccttggagtcaatattgaagtccctaaacttgtcaagaagtttctgaatagtttgccaagaaagaaatacatc  13109200                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                              ----------->GT1                                                   -----                            --------->ARR11(3)                                                  -----                            --------->ARR14(2)                                                 ------                            <---------AGP1                                                  ---------                            <---------ARR11(3)                                           ------->TEIL                            <---------ARR14(2)          --------->ATHB12             <-------MYC2                           <---------CCA1(2)            --------->ATHB51             ------->MYC3                       <----------DOF2                 --------->ICU4                ------->MYC2                    --------->ANAC58     --------->MYB52(1)  <-----------HVH21       <-------MYC3<---       ----------------->AGL1 ------>ZmHOX2a(2)     <---------ARR11(3)           <------ZmHOX2a(1) --  --------->ATHB12  --------->ANAC58  --------->ANAC46 <---------YAB1---------->DOF2<---------ANAC46   gacttcattgcctcattagaacaagctttggatcttaaaaacacaacgtttgaagacattattggtcgcatgaaagtctatgaggaacgtgtatgtgacc  13109300  Previous    Next  AGI:  At3g32112.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.8e-135 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 13108789    to: 13112405    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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