Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------LBD16                                            <---------YAB1                                     ------>MYB83                                     ------>MYB46(1)                 <---------ANAC58                                   <---------MYB59                   <---------DEAR3(1)                                   <---------MYB46(2)                <---------ANAC58                                   <---------MYB111(1)               <---------ANAC46             ---                                  --------->ANAC46              <---------TOE1(1)       <xxxxxxxxxxxx        ------>ZmHOX2a(1)       <---------ALFIN1             <-----------HVH21   ------>ZmHOX2a(2)<--     <-----------GT1           <---------ZAT18 ------>ZmHOX2a(1)<---------TOE2(1)====================    <-----------GT1          <---------At4g35610         --------->ATHB12    <---------YAB1 --------- ------ANAC46                --------->At4g35610        <---------YAB1 <------NtERF2    --------->YAB1   cgcttatttcctgttctctggcatactcttcagcccacctaatattatcctcggagtcttcattgtccgaggcgtcgatatgatcggccttgataatctc  13095300                                                           <---------At4g35610                     <---------ARR14(2)                    --------->At4g35610                     <---------MYB52(1)                    <---------LBD16                   <---------MYB46(3)                  --------->ARR14(2)              --------->ZAT2                        <xxxxxxxxxxxxxxxxsmallRNA(s)              --------->At4g35610                   <---------DEAR3(1)                  <---------ANAC46              <---------At4g35610                  --------->ABI4(2)                    --------->ALFIN1        <------ZmHOX2a(1)                         --------->ALFIN1                  --------->ZAT2      --------->ALFIN1<-------TEIL               <---------MYB52(1)                 --------->TGA1a  <---------LBD16 <---------DEAR3(1)            --------->LBD16 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------LBD16 <---------LBD16              <---------LBD16  --------->SPL7       <---------O2 ------>ZAT2  <---------ZAT2               <---------GLK1(1)  ------>NtERF2         <---------TGA1a xxxxxxxxxsmallRNA(fl3)--------->MYB52(2)  --------->GLK1(1) ----------->HVH21      <---------ZAT2 -------ZAT2--------->ZAT18               --------->ARR14(2) <---------SPL7         --------->O2 ==============HOX2a_HOX2a              --------->LBD16<---------ARR14(2)         <-----------RAV1(2) >GLK1(2)--------->ALFIN1           <-----------GT1<---------ZAT18   <---------ANAC46 --------->ALFIN1   tgctcggggaggagggagctgcggttcgtttcgatttgtttcccgatttccggtgcggttctgcggacgggccttgtagtattgccaggtgtgtggaata  13095400                          ------>NtERF2                       --------->At4g35610                       <---------At4g35610                       --------->ZAT2                       <---------ZAT2                    <---------At4g35610                    --------->At4g35610                   <-----------RAV1(1)                  ------>ZmHOX2a(2)                 --------->CCA1(2)                 ============================HOX2a_HOX2a                --------->ARR14(2)                --------->AGP1<-----------HVH21                                             ---------                <---------ARR14(2)                    --------->RAP2.3(3)                <---------At4g35610                <---------ARR11(3)                    --------->DEAR3(1)                 --------->At4g35610                --------->ARR11(3)    ------>ZmHOX2a(1)                                  <---------ZAT2                --------->ARR14(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->MYB111(2)               <---------GLK1(1)   <------ZmHOX2a(2) --------->RAP2.3(1)             <------MYB83              ----------->ARR10   --------->ARR14(2) <------NtERF2                   <------MYB46(1)   <---------SPL7<------ZmHOX2a(2)<---------ARR14(2)------>NtERF2              ------>ZmHOX2a(1)   <---------RAP2.6(3)<-----------RAV1(1) <---------At4g35610        --------->ICU4 <xxxxxxxxxxxxxxxx  <---------ANAC46===========================HOX2a_HOX2a             ------>ZmHOX2a(1) <--------P   cgagccgtatgggattgagatctgctgctgcccgtcgatcctgaagatgcctcgcgccgaaacgagtagtcctgatcagtccttgggaggtagctgcttc  13095500                                                                                          --------->LBD16                                                                                         <---------LBD16                                                                                         <---------ANAC46                                                                                         <------NtERF2                                                                                        <---------LBD16                                                                                        <------NtERF2                                                                                     <-----------HVH21                                                                               --------->LBD16                                                                              --------->ANAC58 ------                ------>ZmHOX2a(2)                                             <---------ANAC55(2)           --------->ANAC58                                                   --------->HSFB2a(2)<---       ------>NtERF2                 --------->DOF5.7(2)                      <---------HSFB2a(2)----    <---------RAP2.3(1)<---------ANAC46        <-------GAMYB                  --------->ANAC58-------  --------->At4g35610  <---------ANAC58       <-----------RAV1(1)          <---------ARR14(2) <------ >At4g35610--------->ANAC58        ------>ZmHOX2a(2)                       --------->ARR14(2) <------ xxxxxxsmallRNA(le3)   <---------ANAC58   <---------DAG2       --------->YAB1<---------LBD16  -------   gagttgctgcgccaaggatcgatttgcttgttcttgatcgttcaccttctgttgaagttgagccatcatacttctcagttccgcaagggtcgcgggagca  13095600                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                 <---                                                                             >>>>>>>>>>WRKY11  <-----                                                                             >>>>>>>>>>WRKY6   ------                                                                             <---------WRKY18(1)<----                                                                            --------->WRKY12   ------       =======================HOX2a_HOX2a                                   --------->WRKY38(1)<-----       <------ZmHOX2a(1)                                                    --------->WRKY45   <-----    <-----------RAV1(2)                                                  <---------MYB46(3)   ------- --->ATERF1(1)                                                          <---------WOX13(1)    <------ ------At4g35610                                                       >>>>>>>>>ARR2        <-------- ----->At4g35610       ------>ZmHOX2a(2)                             <---------YAB1         <-------- -->ZAT2  <---------ANAC58        <---------ANAC58                --------->ARR14(2)        <-------- ---ZAT2  <---------ANAC58        <---------ANAC58                <---------ARR14(2)    <------------CBF ---At4g35610        <---------ARR14(2)                          <------ZmHOX2a(1)    *TSS <---------MYB46(3) -->At4g35610        --------->ARR14(2)                    <---------At5g28300   <xxxxxxxxxxxxxxxxxxx   gcggcttcaggagcgtctgtctggatcggagggattgggttcccctctgcatcaactgtgttaccgaggatttgattgttgaccattgtgaattgggtgg  13095700                                      ------>ZmHOX2a(1)                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     xxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxx>smallRNA(le3)     <---------TOE1(2)               xxxxxxxxxxxxxxxx>smallRNA(le3)    ------>ZmHOX2a(1)               xxxxxxxxxxxxxxxx>smallRNA(le3) -----MYB83                         xxxxxxxxxxxxxxxx>smallRNA(se3) -----MYB46(1)                      xxxxxxxxxxxxxxxx>smallRNA(fl3) -------MYB46(3)                    xxxxxxxxxxxxxxxx>smallRNA(si3) ------>MYB111(1)                  xxxxxxxxxxxxxxxxx>smallRNA(fl3) -------AtMYB61                    xxxxxxxxxxxxxxxxx>smallRNA(si3) ------>MYB59                      xxxxxxxxxxxxxxxxx>smallRNA(le3) -----P                  <---------ARR11(3) -MYB46(1)  --------->LBD16        xxxxxxxxxxxxxxxx>smallRNA(s) --->MYB55(2)            <-----------ARR10 ---GAMYB  <---------ANAC46        xxxxxxxxxxxxxxxxx>smallRNA(se3)                       <---------TOE1(3) --->MYB111(2)           --------->GLK1(2)                                            <---------AHL20(2) -MYB83    <---------ANAC58       xxxxxxxxxxxxxxxxxx>smallRNA(le3)                <---------AHL20(2) ----MYB46(3)<---------MYB52(1)   <---------ALFIN1                                --------->AHL20(2) -->ALFIN1 <---------ANAC58      xxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------AHL20(1) ---AtMYB61--------->HSFB2a(2)   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->AHL20(1) -ANAC46   <---------HSFB2a(2)   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------AHL20(2) -ANAC58   <---------LBD16       xxxxxxxxxxxxxxxxxxx>smallRNA(se3)               --------->AHL20(2) - -ANAC58  <---------LBD16--------->ARR11(3)       <------------CBF     ------------>CBF  <---------TOE2(3) xxxxsmallRNA(fl3) ----------->GT1xxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)   <x   ttggtcctgtgttccgggagttagaaaaatctcgcccctccttctagcgccaaattgtgagagtcaaaactcgcacaatagaatttattttaagggtttc  13095800                                                                  <---------YAB1                                                          xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       ------>NtERF2                                                      --------->DEAR3(1)                                                      ----------->HVH21                                                    <---------LBD16                                                    --------->At4g35610             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------At4g35610            <----------DOF2                      <---------At5g28300           ------>ZmHOX2a(2)                  xxxxxxxxxxxxxxxx>smallRNA(s)          <------ZmHOX2a(2)                  <xxxxxxxxxxxxxxxxsmallRNA(i)         ------->TEIL--------->GLK1(2)       xxxxxxxxxxxxxxxx>smallRNA(s)         <---------ARR14(2)                 xxxxxxxxxxxxxxxx>smallRNA(s)         --------->ARR14(2)            --------->GLK1(1)--------->SPL7         <-----------ARR10             <---------GLK1(1)<---------ORA47(1)                <---------ICU4         --------->ARR11(3)      ----------->RAV1(1)--------->LBD16--------->ATHB12       --------->ATHB12         <---------ARR11(3)      --------->MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(s)          <---------YAB1        <---------ARR14(1)<xxxxxxxxxxxxxxxxsmallRNA(i)<---------SPL7                     <---------ATHB12    --------->MYB52(1)    ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)      ---------->DOF2 --------->DOF2     <---------GLK1(2)  --------->ARR14(2)<---------DEAR3(1)--------->ICU4--------->ICU4 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------->GAMYBxxxxxxxxxxxxxxxx>smallRNA(s)  --------->YAB1     ---   ttcaaagaacggatctttgtgagattctcaaagaacaacagaattctcaattaccgcggacggtgttcttgattgtattaatgagaaagtaatgatttga  13095900                                                           --------->ARR11(3)                                            <-----------HVH21                               --------->ARR14(2)          <---------ARR11(3)           --------->YAB1      <---------ARR14(2)        <---------TOE2(3)                      <---- --->ZmHOX2a(2)   <---------YAB1         ---------->DOF2 <---------YAB1                  <----------DOF2   tcgtacaagtgtattagaatatgaaaataagtgtttctgccttcaaagtcagagcgtttaagatagtctgaagttgagagcgtttttgtgtcttttctct  13096000                                                                    <----------DOF2                    <---------YAB1                              <---------GLK1(1)                 <----------DOF2     <---------ARR11(3)         --------->GLK1(1)                 <---------DAG2      --------->ARR11(3)        --------->ARR11(3)                 --------------->AGL15                         <---------ARR11(3)                 <---------------AGL15 <-----------GT1        --------->HSFB2a(1)       --------->At4g35610     --------->HSFB2a(2)            <---------HSFB2a(1)       <---------At4g35610     <---------HSFB2a(2)      --------->HSFB2a(2)       ----------->RAV1(2)<---------ZAT6                <---------LBD16  <-----------GT1xxxxxxxxxxxxx ------DOF2    <-------TEIL    --------->HSFC1(1)       <---------HSFB2a(2) <----------DOF2<------ZmHOX2a(1)   ttgtttgtcttctgaggtgctttttatagagttcgagaatatcacctctcgcgatattctcggaagatttctttttatctttatcttgttgaaggagatt  13096100                              <---------ARR14(2)                  --------->HSFB2a(2)                  <---------HSFB2a(2)               --------->GLK1(2)              <---------GLK1(2)              --------->ARR14(2)              --------->ARR11(3)              <---------ARR14(2)             <---------HSFB2a(1)       --------->GLK1(1)             <---------HSFC1(2)        <---------GLK1(1)             --------->HSFC1(2)   ----------->GT1                 <----------DOF2             --------->HSFB2a(1)  --------->LBD16             --------->LBD16            ----------->ARR10 --------->ARR14(2)             <---------LBD16          --------->LBD16     ------->TEIL           <---------ARR11(3)   <---------ARR11(3)        <---------CCA1(2)       <-----------GT1      <---------At4g35610     ---  <---------CCA1(2)    <---------GLK1(1)<---------ARR11(3)   <---------ANAC46                   <---- <---------MYB52(1)    --------->GLK1(1)--------->ARR11(3)  <---------LBD16    <---------ANAC46 ----- xxx>smallRNA(s) <---------LBD16<---------LBD16   <---------GLK1(2)  <---------LBD16          <------   gcccttatcttccgaagattctgggatttctgtatccggtgatatcttcgaagattatctcttccggggttttcggagatgatgtgttttgaatttatac  13096200  Previous    Next  AGI:  At3g32092.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 7.1e-99 P-value blast match to F1M23-4 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family) Range:  from: 13091829    to: 13095686    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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