Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->ANAC58 -------GAMYB                                               --------->ANAC58            <---------TOE1(2) -----MYB46(1)                                       <---------DAG2                <-----------HVH21 -----MYB83                   ------>NtERF2         --------->HSFB2a(1)    <---------AtLEC2 ----->ALFIN1                --------->LBD16       ------->TEIL---------->DOF2    --------->ALFIN1 --->ALFIN1                <---------LBD16        <---------ALFIN1    --------->At4g35610 ----ANAC46            <---------SPL7           --------->RAP2.6(2)   <---------At4g35610          --   tgggttattgatgtgccatagaagacggacgcggacataatccaccaagaccgcaccttctccagcaaagtcagtttccatgaagtgtcccatgttctct  13061600                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             --------->ARR11(3)                                                                             --------->ARR14(2)                                                                             <---------GLK1(2)                                                                             <---------ARR11(3)                                                                             <-----------ARR10                                                                      ===============HOX2a_HOX2a                                                                      ------>ZmHOX2a(1)                                                                      ================HOX2a_HOX2a                                                                      <----------DOF2                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                  <---------ARR11(3)                                                                  --------->ARR11(3)                                                                  --------->ARR14(2)                                                        --------------->AGL15--------->AGP1<---------ZAT14                                                ------->TEIL     <---------GLK1(1)        -----------                                             --------->ANAC58    --------->GLK1(1)        --------->ALFIN1                                             --------->ANAC58--------->DAG2  <---------ARR14(3)                                       --------->ARR14(2)   --------->DAG2   --------->ARR14(3)        <-----------GT1                <---------ARR14(2)  ---------->DOF2   <---------ARR14(2)    <---------TOE2(3)            <---------ANAC46     ------->TEIL<---------ARR14(2)<---------At4g35610 ---->ZmHOX2a(1) <---------MYB52(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <---------CCA1(2)   cctattgagataaccattcgttatgtcaagaagttgagggggataccacgaatttgaacccaaaaggggatccttttcagatcttcatcggagtgaaggg  13061700                           <---------ICU4                           -------->ATHB1                           <--------HAHB4                           --------->AHL20(2)                           --------->ATHB51                   --------->ANAC58                           --------->YAB1                     --------->ANAC58                          --------->ICU4                    ---------->DOF2                          <---------ATHB12             --------->ARR14(2)                          <---------ATHB51             <---------ARR14(2)                  ------->TEIL                    --------->ANAC58                ------->GAMYB<---------YAB1       --------->ANAC46               --------->ANAC58                   --------->ANAC58                                  < <-------TEIL  --------->ANAC58    <------ZmHOX2a(1)--------->ANAC46                             <--- >HVH21       --------->ANAC46 ---------->DOF2   --------->SPL7      <---------GLK1(2)  <------ZmHOX2a(1)   gggtccatttctgtacaacgcacatccaattattaaaggaccaaggtcccctacgcagaaccgaaagcatcgattcttcagattggaacaggaattggac  13061800                                                                                                    <                                                                                                    <             <---------ARR14(2)                                                                    <-             --------->ARR14(2)                                                                    <-             <---------GLK1(2)             <---------ALFIN1                                        <-          --------->LBD16               --------->ANAC46                                       <-----         <---------LBD16                --------->ANAC58                                     <-------    --------->ARR14(2)                <---------ALFIN1                                       <-------    <---------ARR14(2) <---------MYB52(1)  ----------->RAV1(1)                            <---------TOE1(2)   <---------MYB52(1) <-----------HVH21 --------->ANAC58                                <---------ANAC46  --------->LBD16    --------->ANAC46 --------->ANAC46                                  <---------ANAC58 ---------LBD16     --------->LBD16 <---------ALFIN1  <---------AtLEC2      <---------TOE2(3)-------- -------DOF2<------ZmHOX2a(1)      --------->MYB46(3)<------NtERF2       <----------CDC5<---------ANAC58   tttccggttctccaggattctccccgttacttcatcacccacaccccacagtctcggcatggtagagagcatagccctgaggttttgtttccttggattc  13061900                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                   --------->CCA1(2)                                                  <---------ARR11(3)                                                  >>>>>>>>>GATA-2 ---------MYB46(3)                                >>>>>>>>>GATA-3 ---------DEAR3(2)                                --------->ARR11(3) --------TOE1(2)                                  >>>>>>>>>GATA-1 --------TOE2(2)       --------->At4g35610        >>>>>>>>>GATA-4 --------DEAR3(1)      <------------------------ANAC81 --TEIL            --------->ARR14(2)             --------->AGP1                                 <--- --ARR14(2)        ------->TEIL                  --------->GLK1(1)                               <--- --GLK1(2)         <---------ARR14(2) <---------ARR11(3)                                         <--- ->ARR14(2)       <---------GLK1(2) <---------At4g35610          <-----------GT1        xxxxxxxxxxxxx   gtcggtttgactatgagactgaatctgctctcgtttgcagcatcttcacagagatctaaggggagattaacaatctcatcttcgattcccaaggagatgt  13062000                      --------->ANAC46                ------>ZmHOX2a(2)               <------ZmHOX2a(2)              <-----------ARR10              --------->ARR11(3)              <---------ARR11(3)              --------->ARR14(2)                                                    --------->LBD16              <---------AGP1<---------ICU4                                         <---------HSFB2a(2)        <----------DOF2     --------->ATHB12                                       --------->HSFB2a(2)       <---------ANAC58    <---------YAB1                                  --------->MYB52(1)       <---------ANAC58 <---------MYB52(1)                           <---------WRKY45 ------ANAC58 <---------ARR14(2)                                     <---------WRKY12 ------ANAC46<---------ARR14(1)                ---------->DOF2       <---------WRKY38(1)          --- ------ANAC58<---------CCA1(2) *TSS       --------->MYB52(1)        --------->WRKY18(1)        ------ xxxxxxxxxx>smallRNA(se3)  --------->ICU4---------->DOF2 <----------DOF2  xxxxxxxxxxxxxxxx>smallRNA(i)   cttgtagatgctttcggatcttgtccgtcatgattagaatgaacaaagggaaaggagcactttcactctggtcaacaaaacgattccagagacagacaca  13062100                                                                               --------->DEAR3(1)                                                                               ------->GAMYB                                                                               --------->TOE2(2)                                                                               --------->TOE1(2)                                                                              --------->MYB46(3)                                                                         <---------DEAR3(2)                                                                         --------->LBD16                                                                        --------->ATERF1(2)                                                                        <---------ATERF1(2)                                                                       <---------LBD16                                                                      --------->MYB52(1)                                                                     --------->ANAC46                                                                     ------->GAMYB                                                                     --------->DEAR3(1)                                                                    --------->MYB46(3)                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)                                                                  --------->MYB52(1)                                                  <---------MYB46(3)<------------AtMYB77--------->ZAT18                                                 <---------MYB52(1) --------->DEAR3(2)  <---------ZAT18  <---------AHL20(2)                     <---------MYB52(1)  ------>NtERF2<---------MYB52(1)  --------->AHL20(2)                --------->MYB52(1)       ----------->RAV1(1)       <------ZmHOX2a(1)  <-----------TBP                   <---------ARR14(2)      --------->LBD16----------->HVH21   <----- ------>ATHB12           <-------GAMYB<------------AtMYB77  --------->ANAC46  --------->DEAR3(2)   -- --->ANAC55(2)          <---------MYB46(3)---------->DOF2   <---------ETT(1)  <------------AtMYB77<--   tgatttatatagaacaaggggattagcggttgagagggtaaccgttaagccgttgttccatcccgacataaccgccggtaaccgacgaaggacactctca  13062200                                                               <------------------------ANAC81                                                            <------------------------ANAC81           <-------GAMYB                                 <----------DOF2       ------------>AtMYB77                              <---------DAG2       ------------>MYB.PH3(1)             ------->TEIL <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->MYB52(1)<---------ANAC58 ----LBD16<---------MYB46(3)<-------TEIL   --------->ARR14(2) <----------DOF2              <---------ANAC58 -------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------ZmHOX2a(1)                       <---------ANAC58 ----ZmHOX2a(1)            --------->CCA1(2)    <-----------RAV1(2)                   <------ZmHOX2a(1)   ggaaaggagagacggttagagacgaagagatacaatctccaaacgaatcgccaggattgcttttcttttttttttttttttttcttcaggattgcttctc  13062300                    <---------ALFIN1                   --------->ZAT14               <-----------GT1              <---------YAB1            --------->YAB1                                                    ----------------->AGL3            -------->ATHB1                                                    <-----------------AGL2            --------->ATHB51                                       --------->ANAC55(2)            -------->HAHB4                                         <---------ANAC58            <---------ICU4                                         <---------ANAC46            <--------HAHB4                                         <---------ANAC55(2)           <---------YAB1                                          <---------ANAC58           --------->ICU4                      --------->AHL20(2)  ----------->GT1           <---------ATHB51                  >>>>>>>>>GATA-1<---------At4g35610<---------------AGL15        <---------AHL20(2)                 ----------->GT1  --------->At4g35610--------------->AGL15        --------->AHL20(2)        --------->ATHB12  <---------AHL20(2)        =======================    --------->AHL20(2)         =================================================================MADS_MADS    <---------AHL20(2)         <-----------------AG--------->AHL20(2)       <---------ARR11(3)   tctcatttttttaattattacaacactctcagtacatgatttggatagataaatttaaaatcagctattgcgtaacaatatccatatatagtggaagaaa  13062400                                                                                          <----------                                                                                      <---------ICU4                                                                                      --------->ATHB51                            --------------->AGL15                                     --------->AHL20(2)                   <-------TEIL                                                       <---------AHL20(2)                  --------->CCA1(2)                                                  <---------YAB1                 --------->ARR14(2)                                                  --------->ICU4                 <---------GLK1(2)                                                 <---------ICU4               <---------TOE1(2)    ----------->GT1                  <---------YAB1--------->YAB1              ------>ZmHOX2a(1)  ---------->DOF2            <----------DOF2        <--------HAHB4    ------>ZmHOX2a(1) --------->ANAC55(2)           --------->AHL20(2)            --------->AHL20(2)   --------->TOE2(3)<-----------GT1--------->DAG2   <---------AHL20(2)            --------->ICU4 ===========================================MADS_MADS  <---------WOX13(1)   <----------DOF2     <----   aaactcctcaattttcctagattcacgtttctcttaaaaggttacaagttttgtttaattgacttttagttacgaatgctttgaataattattttctctg  13062500  Previous    Next  AGI:  At3g32043.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 9.2e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 13056843    to: 13062031    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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