Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                 <---                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                             --------                                                                                   --------->GLK1(2)<   --------->AHL20(2)                                                              --------->ARR11(3)  <---------ATHB12                >>>>>>>>>>>>>>>>>LFY                             <---------ARR14(2) ----->ANAC58              ----------->RAV1(1)            <---------------AGL15    <---------ARR11(3) ----->ANAC46    --------------->AGL15                    --------------->AGL15   <---------ARR14(1)- ----->ANAC58    =========================================================MADS_MADS--------->ARR14(2) >GAMYB ----------->GT1<------ZmHOX2a(1)      <----------DOF2                     <---------GLK1(2)-- --ALFIN1        <---------------AGL15  --------->ZAT14   ===========================================   ctcaatgaaatggtatctactcttaggagcaacatgttccattgtagtctttttcaaaaactcaatttggaacacatgagaagagaatctttcaagtggg  13016000    --------->MYB46(3)    --------->REM1(1) ------->MYB52(2) -----P <---------ALFIN1 ---GAMYB                                                  <---------ICU4 -MYB83--------->MYB46(3)     <-----------GT1             <---------ATHB12       <---------ANAC58 -MYB46(1)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <---------ANAC58 ->ALFIN1  <----------DOF2  <----------TaMYB80            --------->ICU4         <---------ANAC46 ---------At4g35610        --------->ARR14(2)    <---------TOE2(3)           ------->TEIL -------->At4g35610        <---------ARR14(2) --------------->AGL15 <----------DOF2 ------->MYB59             ---------->TaMYB80 <---------------AGL15 --------------------->WRI1 =============================================================MADS_MADS     <---------AtLEC2   ttagctacaaccactttgaagtttgagagtatataccattttccttctcttaatgtagaaatcatttcttctttgtatgcatgtcttgaagacttagcat  13016100                                                                                                  <--                           <---------ARR11(3)                                                     <--                         <---------AHL20(2)                                                     <----                        --------->AHL20(2)                                          --------->ARR11(3)                <------ZmHOX2a(2)                              --------->ANAC58     <---------AHL20(1)               --------->ARR11(3)       --------->CCA1(2)      --------->ANAC58     --------->AHL20(1)               <---------ARR11(3)      <---------ARR11(3)  --------->YAB1          --------->AHL20(2)           --------->LBD16 --------->ARR11(3)        --------->YAB1     <----------DOF2   -----------    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ARR11(3)<---------ARR11(3)    --------->AHL20(2) ---   cgattcgatgtccctgagatcatatataaaatctcagtgaagatatatagagtattcaaaatcataagcattgtctttttttaaaatatatagagtataa  13016200                     ------->TEIL          <---------ARR11(3)          --------->ARR14(3)              ----------->GT1          <---------ARR14(2)            ------>ZmHOX2a(2)          --------->ARR14(2)           <------ZmHOX2a(2)          --------->ARR11(3)           --------->CCA1(2)          <---------ARR14(3)          <---------ARR11(3)    --------->At4g35610               --------->AGP1                                          <------    <---------At4g35610               --------->ARR11(3)                                     <------- -------ARR11(3)<---------AtLEC2      <---------AGP1                                      <---------CCA1(2) ---------ARR10 <---------ANAC46      --------->ARR14(2)                               -------------- -----AHL20(2)  <---------ANAC58      <---------ARR14(2)                          <---------GLK1(2) >GT1   ----------->ARR10            <---------GLK1(1)      <---------HSFB2a(2)   --------->ARR11(3) ------>ARR11(3)<---------ANAC58     --------->GLK1(1)<---------MYB52(2)          <---------ARR11(3)   aatctcagcgaagatattgcatggatgtttatattcaagagatctggtaaataacaactaatctcgaaataaaaactgcaaatagatttttcataccttt  13016300                             --------->LBD16                            --------->ANAC46                            --------->LBD16                           --------->LBD16                           <---------HSFB2a(2)                     <-------TEIL                                     --------------->AGL15                    <-----------ARR10                                 <---------------AGL15                  <------MYB83                                   <---------ANAC58                  <------MYB46(1)                                <---------ANAC58                  --                 --------->MYB59 --------->AHL20(2)             --------->At4g35610                --                 <---------TOE1(2)      <------ZmHOX2a(1)--------->TOE2(3)        <----------DOF2  -- ----DOF2        --------->MYB111(1)--------->ICU4    <---------ALFIN1=============================== --DAG2    --------->YAB1  --------->HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <--- ->AtSPL8 <---------YAB1  <---------LBD16     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ---------->ID1   tcatcaactaaaatcatagtaggttcttccccgaagtaattaggaggccaattccacaacctcagtagcttaacaaatatagaacttttgttttttttag  13016400              <---------ARR11(3)              --------->ARR11(3)              --------->ARR14(3)    <-----------HVH21             <---------HSFC1(1)   --------->ANAC58               --------->HSFB2a(2)   --------->ANAC58               <---------HSFB2a(2)               <---------LBD16 ------->ANAC58                   --------->HSFC1(1)            <----------DOF2                    <- ------->ANAC58          ----------->HVH21<----------DOF2     --------------->AGL15            ------ ------->ANAC46      <---------YAB1--------->LBD16 ---------->DOF2 <---------ANAC46  --------->CCA1(2) =============================================================================MADS_MADS  <------ZmHOX2a(1) ---ZmHOX2a(1)<---------ARR14(3)  *TSS--------->GLK1(1)       =======================================   gacgcaagtcagagaaggtcttgatgtttgacatttccagaactcttttttttcaaagtgttttctcttttgtggaaaatgaatgagataaggagagagt  13016500                       --------->ARR11(3)                  --------->TOE2(3)                 --------->ANAC58                 --------->ANAC58                 --------->ANAC46          --------------->AGL15              --------->AHL20(2)                    --------->YAB1          <---------------AGL15          --------->AHL20(2)                        <---------ICU4         ------------>CBF <---------YAB1 <---------AHL20(1)                        --------->ATHB12         <-----------------AGL1          --------->AHL20(1)                       --------->ICU4      <----------DOF2  <---------ARR11(3)<---------AHL20(2)                   <---------ATHB12 -----------CBF <---------TOE2(3)<-----------GT1                         <---------At4g35610 --->GLK1(2) <---------ATHB12  <---------AHL20(2) --------->YAB1    <---------GLK1(1) =========================MADS_MADS     --------->AHL20(2)          --------->GLK1(1)      <---------   ctattgttctttccaataaacgtaagttcttattttttcgaaataaattatatcagaattgaattttcagatttcagccaatgaatgattactctttttg  13016600                                             <---------ARR11(3)                                             <---------GLK1(2)                                    <---------ARR11(3)                             <------ZmHOX2a(2)                            --------->AGP1   --------->ARR11(3)                     <---------GLK1(1) <----------DOF2                     --------->GLK1(1)------>ZmHOX2a(2)                    >>>>>>>>>>GATA-1--------->ARR11(3)           <---------AHL20(2)--------->CCA1(2)         <---------RVE1(1)  --------->ARR11(3)                     <-----------GT1              <----        <---------GLK1(2)   <---------ARR14(2)                     --------->YAB1               <----        --------->ARR11(3)  --------->ARR14(2)                 --------->KAN4(1)             <------- -DOF2  <---------ARR11(3)  <---------ARR11(3)               <---------GLK1(2)        <-----------GT1   aatttagacagatttttttgtggatttcaagatccactgatcttttagatttttgaaaatacagattattcacaatatttcttatatatcacatcttact  13016700                                   <------ZmHOX2a(1)       --------->AHL20(2)         ----------->GT1                                  --------->TOE2(3)       <---------AHL20(2)       --------->YAB1     <---------AHL20(2)              --------->TOE1(3) -----DAG2           <-------TEIL<---------TOE2(3) <---------YAB1   <---------TOE2(2) ------DOF2       <---------At4g35610              --------->AHL20(2)           <-----------GT1<----- ----GT1          --------->At4g35610      ----------->RAV1(1)      <---------TOE1(2)        <-------   ttttcttatatatatactacagatgcaagtagaatgaggataaaacaacacatataattctctattttcatatgtttcagtttaaccttgaaaccgattg  13016800                        <------MYB83                        <------MYB46(1)                <---------YAB1                       --------->MYB46(2)             <---------TOE2(3)                       --------->MYB111(1)           --------->MYB52(1)                       --------->MYB59               <-----------GT1               --------->TOE2(3)                       --------->MYB111(2)   ----------->GT1                    --------->RVE1(1)          <---------TOE2(3)              <---------AHL20(1)                 --------->AHL20(1)    --------->ICU4    <--------P         --------->AHL20(1)                 --------->AHL20(2) ----MYB46(3)      <---------TOE2(3)     --------->ARR11(3)                 <---------AHL20(1) --MYB52(1)        <---------TOE1(3)    --------->AHL20(2)                  <---------AHL20(2)      <   ttagcaattgttaagaaaatgaaggttggtataagagtataaatatatagtaaaataacgatagtggaagtctttcaataaaatacctcagaaaaataga  13016900  Previous    Next  AGI:  At3g32027.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 13015082    to: 13016434    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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