Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           ---------->DOF2           <---------YAB1            --------->AHL20(2)       ================================HOX2a_HOX2a       --------->TOE1(3)       <------ZmHOX2a(1)         --------->YAB1          --------->TOE2(3) -----------HVH21               <------ZmHOX2a(2)        <---------MYB59 ------YAB1                    <---------ARR11(3)      ------->TEIL                 <-----------GT1 -----TOE2(3)                  --------->ARR11(3)--------->GLK1(2)    ---------->DOF2 --------->ANAC46   tgtttcacaggaaaagaacatgaagagtttcaagatcatcatatatatcagactctgaacctaaaaaataagaaaagaattttgttatacatcacatact  13009800                                     --------->ARR14(2)                                     <---------ARR14(2)                              --------->MYB52(1)                              ---------->DOF2                                                     <--                            <---------MYB52(2)      <---------At5g28300                       xxxxxxx                         --------->AHL20(2)        <-----------GT1                         --------->ATHB12                       <---------ANAC55(2)      <---------ICU4                       ------>ZmHOX2a(1)                       ----------->GT1  <---------YAB1                        <---------GLK1(2)   ---                    --------->GLK1(2)<---------MYB52(1)                  <-----------HVH21<-------TEIL   atagttttttttaacagcgaagaatatgtaaataacgcagttatgcttaatatttaccatctgattatccattactgtcacattctcctaaattcatttg  13009900                                                                      --------->TGA2(1)            --------->ARR14(2)                                        --------->ANAC58            <---------ARR14(2)                                        <---------TGA2(1)      <xxxxxxxxxxxxxxxxsmallRNA(s)                                    <---------bZIP60(1)      <---------WOX13(1)                                              --------->bZIP60(1)    --------->ATHB12                                                  --------->ANAC58   ------>ZmHOX2a(1)           <------ZmHOX2a(2)                      --------->ANAC46   ===================================HOX2a_HOX2a      --------->ANAC46------>NtERF2   <---------YAB1   <------ZmHOX2a(1)           ------>ZmHOX2a(1)  ----------->TGA1 -------GLK1(1)     ==================HOX2a_HOX2a--------->TOE1(1) ----------->HVH21          ------- xxxxxxxxxxxxx>smallRNA(si3)   ========================HOX2a_HOX2a<-----------HVH21          <------- ------>GLK1(1)  <---------LBD16      <---------MYB52(1)         --------->ALFIN1       <------ZmHOX2a(1)   atttcctgattgcagaaattcaggaagaattggatcatccgttctgtctcctcgtccacaatacaatgtgtgacgccatttatctgaagaggaatgtcat  13010000                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                        <------MYB46(1)                          ------>ZmHOX2a(1)                                           <--------P                         --------->TOE1(3)                                    --------->ARR11(3)  --------->DAG2         --------->TOE2(3)                                    <---------ARR11(3) ---------->DOF2       <---------YAB1                                  <---------AtLEC2 <------MYB83 -->ATHB12            <-----------GT1                           <---------MYB46(3) <---------TOE2(2) --YAB1        --------->GLK1(2)                 ------>ZmHOX2a(1)   <---------YAB1<---------TOE2(3)   tggtaaagtttctaaacaatcttttatccttagacgggtttgatgtctctccttcttcaaaattagttgttgtgaatggagaacttaggttggaatttgg  13010100                                                                                     --------->ARR14(2)         ------>ZmHOX2a(1)              --------->ANAC46                             <---------ARR14(2)    <---------GLK1(1)                 <-----------GT1                           ------>MYB46(1)    --------->GLK1(1)            <---------ZAT6                                 --------->MYB52(1) <---------YAB1          <---------MYB52(1)                                     ------>MYB83 -MYB46(1)      <-----------GT1----------->GT1                              -------->P          <---- -MYB83<---------LBD16  --------->TOE2(3)                                <---------ANAC58     ------- -->MYB59--------->LBD16--------->TOE1(3)                                <---------ANAC58  *TSS -----   tatatgatttcctgaatataacaaaacgttagatagtattaaacgacatgagactcaccaagtttgtaaaccatgacttaccaaatggatactgagaatc  13010200                                                                                 <------------CBF                                                                            <---------At4g35610                                                                            --------->At4g35610                                                                            --------->ZAT2                    --------->YAB1                                          <---------ZAT2      ----------->HVH21                                                    <-----------RAV1(1)    --------->At4g35610      <<<<<<<<<MYB98                                ------>ZmHOX2a(1)    <---------At4g35610    ----------->GT1          XXXXXXXXXXXXXXXXXXXXXXX>MIR163   ------->TEIL    <---------YAB1               <---------WOX13(1) ===============HOX2a_HOX2a       - ----HAHB4     <---------GLK1(2)               <------------CBF    <------ZmHOX2a(2)                < -->GLK1(2)  <-------TEIL <---------TOE2(2)   --------->ATHB12    <---------ARR11(3)    <---------TOE2(3) ---->ATHB12<--------P<---------YAB1         <---------YAB1       --------->ARR11(3)   <-----------GT1   atttgcatctgaaggtagattatcatcatatgttaaatgccttcgatatgattgaataagacttggaagatcgattcctgctgcattgttaacatttcat  13010300       ----------->GT1                                  <---------AHL20(2) --------->AHL20(2)                                  --------->AHL20(1) <---------AHL20(2)                                  <---------AHL20(1)                      <------- <---------AHL20(1)                           --------->TOE1(3)              --------->TOE1(3) --------->AHL20(1)                ----------->RAV1(1) --------->AHL20(2)    --------->TOE2(3) -------->AHL20(2)              <------ZmHOX2a(1)   --------->AHL20(2)------>ZmHOX2a(2)      -------- ---------AHL20(2)    ----------->GT1     ---------->DOF2        <---------WOX13(1)   <---------YAB1   aaataaattttgttaaatgtagttatgttatataggacaacatataaagcttaaatatataatatagattgatctgtaaacttaacttatttttggtgtt  13010400                                 <---------ANAC58               <---------ANAC58  <---------ANAC58               <---------ANAC58 --------->ATHB12  --------->ANAC46  <---------ANAC58  <---------ANAC46  --------->ANAC58  <---------ANAC46<---------ANAC46    ----------->GT1                       <------  --------->ANAC58  <---------ANAC58<------MYB83 <----------DOF2                            --------- --ZAT6<---------ZAT14<-------GAMYB <------MYB46(1) --------->ATHB12                      <---------MYB52(2) --->GT1 ---------->DOF2       <---------YAB1------->TEIL                      --------->AHL20(2)   aaacacgactgcaaagtgcgaggcgtttgcctaatgcttggtgtatgaactctttgatttgtaatatcacttagaaccctattaaaaacagaactaactg  13010500                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                  <---------HSFC1(2)                                                  --------->HSFB2a(1)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <--                               <---------ANAC46   <---------HSFB2a(1)                      <---------AHL20(1)                             --------->MYB52(1)   --------->HSFC1(2)                       --------->AHL20(1)                            ----------->TGA1   <---------At4g35610                         <---------AHL20(2) ------AtMYB77              ----------->HVH21<---------HSFB2a(2)           --------->YAB1  --------->AHL20(2) >MYB52(1)                 <---------WOX13(1)--------->HSFB2a(2)          <---------YAB1  --------->AHL20(2)   gcactaatttcttcacacttggtccattgaatgacggaggtgtattttcagaagcttctccatgtctaaaccgcttatcatatgtgttttgaataaattt  13010600                  ----------->GT1                  <---------MYB46(3)              <---------AHL20(2)             <---------AHL20(2)             --------->AHL20(2)            <---------YAB1              --------->ARR11(3)          --------->ATHB51              <---------ARR11(3)          --------->YAB1           --------->ATHB12          <---------ICU4           <---------AHL20(2)          --------->AHL20(2)      <---------AHL20(1)          <--------HAHB4          <---------AHL20(2)          -------->ATHB1     ------>ZmHOX2a(2)                                                      -         <---------ATHB51<XXXXXXXXXXXXXXXXXXXXMIR860        ----------->GT1                        <-         --------->ICU4<---------ANAC55(2) <----------DOF2 <---------YAB1           --------->ARR14(2)         <---------YAB1--------->ANAC55(2)------>ZmHOX2a(2)<---------TOE2(3)        <---------ARR14(2) ----------->GT1<---------WOX13(1)--------->AHL20(1)    --------->ICU4       ---------->DOF2       -- -------AtLEC2--------->ATHB12    --------->AHL20(2) --------->AHL20(2)   --------->TOE2(3)    <-----   acatggaaacaattattaattggttacatgatccaatttattgatctttgtctatgtaaatatggttattttgttttcttaaagagaattcgattattca  13010700  Previous    Next  AGI:  At3g32022.1    Description:  transposable element gene. pseudogene, helicase, blastp match of 37% identity and 5.2e-207 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)} Range:  from: 13005489    to: 13010191    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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