Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    ----------->RAV1(1)                                 <---------ETT(2)                                 ----------->HVH21                        --------->ZAT2                    ------>MYB83 --------->ETT(2)                    ------>MYB46(1)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  --------->AtMYB61                  <---------ALFIN1------>NtERF2                  xxxxxxxxxxxxxxxx>smallRNA(s)                 <xxxxxxxxxxxxxxxxsmallRNA(i)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                 --------->MYB46(3)                xxxxxxxxxxxxxxxx>smallRNA(i)                <xxxxxxxxxxxxxxxxsmallRNA(i)               <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxx>smallRNA(i)               xxxxxxxxxxxxxxxx>smallRNA(s)              <xxxxxxxxxxxxxxxxsmallRNA(s)              xxxxxxxxxxxxxxxx>smallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxx>smallRNA(i)             xxxxxxxxxxxxxxxx>smallRNA(s)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           xxxxxxxxxxxxxxxx>smallRNA(s)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->ZAT14          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ZAT14       xxxxxxxxxxxxxxxx>smallRNA(i)<------NtERF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ZAT18       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(i)                             -      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s)                              -    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(s)                             <-    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ZAT14                               <-----------HVH21   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)                 ----------->RAV1(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------MYB52(1)   <-- ------MYB52(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ARR14(2)    <-------GAMYB         --- ----ZAT6<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------ANAC46        <---------MYB46(3)     ---   ttactcgacctgatactcgaccacccagttgtctggcgacagactgtgcagtcgagtatacctgttacattatctgtctgttactcaacctgtcactcga  12986400                                                                                                    x                                                                                                    x                                                                                                 ----                                                                                                 ----       <---------ZAT14                                                                          -----       --------->ZAT14                                                                          -----       <---------ZAT18                                                                        -------       --------->ZAT18                                                                       --------   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                              --------   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            <<<<<<<ZML2  --------->MYB46(3)                                                                    --------->HSFB2a(2) --------->ANAC46                                                                 <------ZmHOX2a(1)xx ----->MYB83                    <---------ANAC46                          xxxxxxxxxxxxxxxx>smallRNA(i) ----->MYB46(1)            --------->MYB52(2)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------ALFIN1    --------->At4g35610             <----------DOF2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------MYB55(2)   <---------ZAT2       <----------DOF2                 xxxxxxxxxxxxxxxx>smallRNA(i)< ------>MYB46(3)   --------->ZAT2>>>>>>>>>TAC1     <---------WOX13(1) xxxxxxxxxxxxxxxx>smallRNA(i)--- ------>AtMYB61  ------->GAMYB xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AtLEC2   <---------HSFB2a(2)   cccacccagtgctctgcaacgagctgtgttagtcgagtgtttctttgtttctgcttgatgttctgttttctgcatgttcacttaggactgctagaacgca  12986500                           xxxxxxxxxxxxxxxx>smallRNA(i)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      xxxxxxxxxxxxxxxx>smallRNA(i)                      <xxxxxxxxxxxxxxxxsmallRNA(i)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <---------WRKY18(1)                     <xxxxxxxxxxxxxxxxsmallRNA(i)                    xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxx>smallRNA(s)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxx>smallRNA(i)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------ANAC58                  <---------ANAC58             <---------ANAC58             <---------ANAC58                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxsmallRNA(s)                       <---------ALFIN1     <xxxxxxxxxxxxxxxxsmallRNA(i)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(i)                    <---------MYB46(3) xxxxxxxxxxxxxxx>smallRNA(i)                     <---------WOX13(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------YAB1             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----->ANAC58<---------ANAC46                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->ANAC58<---------AtLEC2                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>RAV1(1)xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -->TEILxxxxxxxxxxxxxxxx>smallRNA(i)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -->ZAT18   --------->ATHB12  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <---------WOX13(1)    ------ ->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ATHB12       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ->ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ARR11(3) xxxxxxxxxxxxxxxx>smallRNA(s)      ------ xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   ------ xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     ------ ------>AtMYB61xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->TOE1(3)  <   ccaaaacctgttattgcttggcttgacttagtgacttctgatcacatcttgattgttagcatcacacctatttggattgacaaccttcagtactaccacg  12986600                       --------->ARR11(3)                       <---------ARR11(3)                    <---------WOX13(1)         <----------DOF2 ------>ZmHOX2a(2)                                               xxxxxxxxxxxx    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          <---------ANAC46        <---------GLK1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <-----------RAV1(1)                 --------->GLK1(1) --->ANAC58       --------->ATHB12                <---------At4g35610        <-----------GT1       <- --->bZIP60(2)   <---------AHL20(2)     <---------YAB1          <---------ANAC58        xxxxxxxxxxxxx --->ANAC46      --------->AHL20(2)    <-----------GT1          <---------ANAC58     <---------TOE2(3) --->ANAC58   <------ZmHOX2a(1)       --------->YAB1<---------MYB46(3)    <---------MYB46(3)       <- ---------YAB1==================HOX2a_HOX2a       --------->At4g35610     --------->MYB52(2)       <-   acatgatagtgctttaggattaattgatcttaaaaacctattatcaatttggagctgttgcaaattgggtgtttgtttgttacatttgagatttcagact  12986700                                                                            <---------ALFIN1                                                                            --------->REM1(1)             <----------DOF2                                               <-------TEIL     *TSS          <---------ARR11(3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)          --------->ARR11(3)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <------ZmHOX2a(2)                                                 --------->LBD16  --------->ARR14(2)    --------->ARR11(3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxx>smallRNA(i)                                                     <-----------RAV1(2)  --------->ANAC46 --------ANAC58                 <-------GAMYB                        ------>ZmHOX2a(2)  <---------ARR14(2) xxx>smallRNA(i)          <----------DOF2                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------ANAC58        <-----------GT1                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------ANAC46  ------------>CBF<---------MYB52(1)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <   tgcttagatcaagttctttttcaattttcttttcggttactaactatgtgtttttctcgttgtcttcttgatccaggtacacctctactgtatacgaact  12986800                 <---------HSFC1(2)                                                                 -                 <---------HSFB2a(1)                                                                <                 --------->HSFB2a(1)                                                               <-               <---------GLK1(2)                                                               <-----               <---------ARR14(2)                                                              ------               --------->ARR14(2)                                                             -------              xxxxxxxxxxxxxxxx>smallRNA(s)                                                 --------->TOE2(3)            --------->YAB1                                                                xxxxxxxxxxx           <---------ATHB12                                                               <xxxxxxxxxx          <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             ------->TEIL         --------->WOX13(1)                                                             <xxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ANAC58                   <xxxxxxxxxxxxxx      --------->ANAC58        --------->YAB1       --------->ANAC58                   --------->TOE1(1)      --------->ANAC58       <---------ATHB12   --------->ZAT2                  <---------WRKY38(1)--      --------->ANAC46     --------------------->WRI1              ----------->GT1<xxxxxxxxxxxxxxxxxx     ------->GAMYB    <----------DOF2         <---------CCA1(2) ---------->DOF2 <---------WRKY12-----   <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->TOE2(1) ------ZmHOX2a(2)--------->HSFC1(2)   --------->MYB46(3)    ---------->DOF2    --------->WRKY18(1)---   cgatcaacaggcaatcagaacctccttttcaatgaaaacatcgaccgcatagctcgcaaactcaaagaaaggagaaacacagtcaaccttgtacctcagc  12986900                                                                      --------->TGA2(2)                                                                     <-----------HVH21                                                                    --------->bZIP60(2)                                                                    <---------O2                                                                    --------->TGA1a                                                                    <---------bZIP60(1)                                                                    --------->O2                                                                    --------->bZIP60(1)                                                                    --------->ANAC46    --------->ANAC58                                                --------->ANAC55(2)    --------->ANAC58                                                <---------ANAC55(2) -------->AtMYB61                                                   --------->ANAC58 ---------ALFIN1                                                    =============================bZIP_DOF --------MYB55(2)                                                   --------->ANAC58 ----At4g35610                                                      --------->ANAC55(1)             < --->At4g35610                                xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->ARR11(3) -->ANAC46                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ANAC58 xxxxxxxxxx>smallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ANAC58 xxxxxxsmallRNA(s)                          ----------->RAV1(1)   <---------ALFIN1--------->At4g35610 xxxxxxxxxxxsmallRNA(fl3)                ------>NtERF2          ------->TEIL      <---------At4g35610 xxsmallRNA(s)                         xxxxxxxxxxxxxxxx>smallRNA(i)<-----------STF1   ---------->DOF2 ------->MYB46(3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<-----------TGA1<------ZmHOX2a(1) xxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxsmallRNA(i)      <-------TEIL   --------->DEAR3(1)    <- ---->MYB46(3)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->At4g35610<-----------HVH21   <xx ----->P             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------At4g35610<-----------TGA1   ----   aaccactcgaaatggctgaagaacagaatcaacaaaatggccctgccaacattggtgctggagatgcaccacgtcatcaccgtcagaggaaagaaattgc  12987000                                                                                                <xxxx                                                                                               xxxxxx                                                                                              <xxxxxx                                                                                              -------                                                                                             xxxxxxxx                                                                                            <--------                                                                                            <xxxxxxxx                                                                                           ------>ZmHOX2a(2)                                                                                           <xxxxxxxxx                                                                                          <------ZmHOX2a(2)                                                                                         <-----------ARR10                                                                                         --------->ARR11(3)                                                                                         <---------ARR11(3)                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                        <------ZmHOX2a(1)                                                                                   <---------ATHB12                                                                                  xxxxxxxxxxxxxxxxxxx                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->LBD16                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <          <---------HSFB2a(2)                            --------->LBD16         xxxxxxxxxxxxxxxxxxxx   ------>ZmHOX2a(1)     <---------HSFB2a(2)            <---------LBD16         <xxxxxxxxxxxxxxxxsmallRNA(i) ----------->RAV1(2)     --------->HSFB2a(2)           <-----------RAV1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(s)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxx --------ALFIN1       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxx xxxxxxxxxxxxxxsmallRNA(s)      <---------YAB1    <---------YAB1xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) - --->TEIL --------->HSFB2a(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(s) --   acctcctgctatccagaaaaacaacttcgagattaagagtggtctcatctcgatgattcaggggaacaaattccatggtctgccaatggaggatccactc  12987100      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxsmallRNA(si3) -->ANAC46 xxxxxxxxxxxxxxx>smallRNA(s2)                                               --------->MYB52(2)     -- -ALFIN1     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            <---------MYB52(1)     <--- xxxxxxxxxxxxxxsmallRNA(si3)            <------ZmHOX2a(2)               <---------ANAC46        ===== xxxxxxxxxxsmallRNA(se3)               <---------ARR11(3)           <---------ZAT2              ----- xx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------ALFIN1                 <<<<<<<GRF7   <---------bZIP60(1)  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxx>smallRNA(se3)             ----------->HVH21              <---------ARR14(2)                ----- xsmallRNA(si3)              ----------->RAV1(2)<-----------HVH21   --------->ZAT2     <---------YAB1 xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------->DOF2            --------->ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(s) -------->AtMYB61           -------->P --------->ARR11(3)--------->MYB52(1) <---------MYB46(3) <----- ------->MYB46(3)<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------GT1 ------   gaccaccttgatgaattcgataggctctgcaacctgacaaagatcaatggtgtcagtgaaaacggattcaagctccgtttgtttccattctccttgggcg  12987200                                                     --------->ATHB12                                                    --------->ICU4                                                    <---------YAB1                                                --------->LBD16                                               --------->LBD16                                               <---------LBD16                                               --------->ANAC46                                              <---------LBD16                                             ------>MYB46(1)                                             ------>MYB83                                            --------->ABI4(1)                      <---------At4g35610  --------->AtMYB61           <---------HSFB2a(2)             --------->DEAR3(1)         --------->At4g35610               <---------ALFIN1     --------->ANAC58------->TEIL         --------->MYB46(3)     --------->ANAC58<---------ARR14(2) --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <--- -------->DOF2       --------->ARR14(2)--------->MYB46(3)                       <---------ARR11(3) ---NtERF2 --------->HSFB2a(2)         <---------ATHB12                         --------->ARR11(3) ====================RAV    xxxxxxxxxxxxxxxx>smallRNA(i)           <----------DOF2               ---- ->NtERF2<---------At4g35610<xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  x ------>RAV1(1) --------->At4g35610  --------->WOX13(1)<---------WOX13(1)   ---------->DOF2<---------ATHB12 -----ID1----------->RAV1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---- ----->HVH21    <---------At4g35610<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->YAB1  ----------   acaaagcactcatctgggagatgaatctgccccatgactcaatcaccacccgggatgattgcaagaaggcttttctatcaaagttcttctccaatgacag  12987300  Previous    Next  AGI:  At3g32000.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 5.4e-305 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 12986792    to: 12989530    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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