Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ------>ZmHOX2a(2)            <------ZmHOX2a(2)                --------->ATHB12         --------->SPL7                         ------>ZmHOX2a(2)             <---------At4g35610       <---------SPL7                         --------->ARR14(2)        <---------ANAC58               <-----------HVH21                      <---------ARR14(2)        <---------ANAC46             ------>ZmHOX2a(2)                 --------->SPL7        <---------ANAC55(1)         <------ZmHOX2a(2)                 ----------->RAV1(2)        <---------ANAC58           --------->ARR14(2)                 <---------MYB52(1)           <-     --------->ARR14(2)            <---------ARR14(2)                <-----------HVH21        -------     <---------ARR14(2)  <-----------HVH21----------->HVH21      <---------ARR14(2)        <---------At4g35610     <---------MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(i)              --------->ARR14(2)       <---------TOE1(1) -------->HVH21<---------YAB1     xxxxxxxxxxxxxxxx>smallRNA(i)------>ZmHOX2a(2)<------ZmHOX2a(2) ----   ctgacccgttccgtctgatgatcggcctgtcccatccgatccgtccgacgatcagtctgtctgatccaatccgtctggccgatccgattagtccgatgat  12951200                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                         ------>ZmHOX2a(2)                                  ----------->HVH21  --------->CCA1(2)                   --------->SPL7------>ZmHOX2a(2)  <---------AGP1                  ----------->RAV1(2)   <------ZmHOX2a(2)                  <---------MYB52(1)   <---------ARR14(2)               ------>ZmHOX2a(2) --------->DEAR3(2) --------->AGP1                                  x             <---------ARR14(2) <------ZmHOX2a(2)   --------->ARR14(2)                              <             --------->ARR14(2)<---------ARR14(2)   <-----------ARR10                              --         <------ZmHOX2a(2)  ------>ZmHOX2a(2)       --------->ARR11(3)                             --        --------->ARR14(2)--------->ARR14(2)        <---------ARR14(2)                             --        <---------ARR14(2)<---------ARR14(2)   -------->P                        -------->P      <--- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ARR14(2)                  --------->HSFB2a(1)  <---- ----------HVH21 <-----------HVH21--------->TOE1(2) <---------ARR11(3)   --------->MYB52(1)     ----- -->ATHB12------>ZmHOX2a(2)<------ZmHOX2a(2) <---------ETT(2) ---------->ID1   <---------ETT(2) <---- -->ZmHOX2a(2)<------ZmHOX2a(2)--------->ARR14(2)  <---------CCA1(2)    <---------SPL7       ------>ZmHOX2a(1)   cggtctggccgatccgatccgtctggccgatccgatccgacgatcggtctaccagatctgatttgtctctaagacgaacggtctaccctcccatcctcta  12951300                            <---------ANAC58                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   ------>NtERF2                       <xxxxxxxxxxxxxxxxsmallRNA(i)                   <---------ALFIN1                       <------MYB46(1)                                --------->DEAR3(1)                       <------MYB83                                  --------->ANAC58                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->ANAC58                      xxxxxxxxxxxxxxxxxxx>smallRNA(le3)            --------->ATERF1(1)                      <---------AtMYB61                            <---------ALFIN1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   --------->At4g35610       <--------    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                         --------->RAP2.3(2)        ---------   <xxxxxxxxxxxxxxxxsmallRNA(i)                      <-----------GT1--------->SPL7   <---------MYB111(2) xxxxxxxxxxxxxxx>smallRNA(s)<---------ANAC58    ----------->GT1  --------->RAP2.6(2) --------->MYB46(3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------MYB52(1)  --------->DEAR3(1) ------>MYB83 ------->ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->RAP2.3(1) ------>MYB46(1) ------->ANAC46     <---------MYB52(1)      <-------GAMYB       --------------->AtSPL3     <---------LBD16 ------->ANAC58     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------ARR14(2)  --------->AtMYB61 ------ALFIN1     <---------LBD16          <------MYB83       --------->ARR14(2) --------->MYB46(3) -----REM1(2)    <---------LBD16           <------MYB46(1)   ------>NtERF2    <---------ETT(1)    --- ---->ZAT14   ----------->HVH21           --------->MYB59--------->ANAC46<---------ALFIN1 <---------LBD16 -----ZAT14 <---------MYB52(1)          <---------MYB52(1)  --------->DEAR3(1)--------->DEAR3(1)  <--   cactccatcgaaccgttggaccgggaggtagcatgcgcatcagttcggttgagttatactcgccgagccgcaccccctctccgaccaacaacttcgggat  12951400                                                           <------NtERF2                         ----                                                          <---------SPL7                     --------                                                   <---------ANAC58                         ---------                                                   <---------ANAC46                         ---------                                                   <---------ANAC58                        --------->HSFB2a(2)                                              --------->At4g35610<---------------AGL15     <---------HSFB2a(2)                                         --------->ALFIN1<---------ANAC58              <---------ANAC58                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----------------->AGL3 <---------ANAC58 -HSFB2a(2)                 <---------ANAC46  <---------At4g35610--------------->AGL15<---------HSFB2a(1) >HSFB2a(2)               <---------ANAC46<-----------HVH21--------->ATERF1(1)        --------->HSFC1(2) ------>ALFIN1            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)------>ZmHOX2a(1)       --------->HSFB2a(1) ---------RAV1(1)      <---------ANAC46<---------ANAC46  <---------ANAC58             <---------HSFC1(2)   gtgttgggattgttttgagaatgttttgtggtgtatggatgatgtgtgagatgccttgggcgtcctcccttatataggggagaatggatgcttcccgaag  12951500                                                      --------->HSFB2a(2)                         ---------->DOF2  <---------ANAC46                       <---------HSFB2a(2)<---------ANAC58               <---------ANAC58                       --------->HSFB2a(2)<---------ANAC58            <---------MYB52(1)<---------DEAR3(1)                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <-----------HVH21     ------>ZmHOX2a(1)     <-------TEIL   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------->DOF2  <---------ANAC58 ----->YAB1<---------ANAC46            <---------MYB52(1) --------->DAG2--------->MYB52(2) ->LBD16   <---------ANAC58  <-----------HVH21        <---------HSFB2a(2)<---------ANAC46  --------->AtLEC2 >ANAC46   <---------ANAC58--------->DAG2--------->MYB52(2)----------->GT1        <----------DOF2  <- >LBD16   --------->MYB52(2)----------->GT1        ------>ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   catcacattcgttccttgcacccttccgaaaggtcacatccgtttcttgcatccttccgaaaggtcacatccgttccttgcatcctttgggcgatgcaac  12951600                                                                         --------->ZAT2                xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <---------ZAT2             *TSS            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->At4g35610           --------->ANAC46<----------DOF2                              <xxxxxxxxxxxxxxxxsmallRNA(i)<          --------->MYB46(3)<xxxxxxxxxxxxxxxxsmallRNA(i)               <---------ALFIN1----------->HVH21       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------At4g35610      <-----------HVH21---      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------MYB52(1)--------->MYB46(3)         ---     <------MYB83         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--     <------MYB46(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)     -----    --------------->AtSPL8<---------DAG2            --------->LBD16<---------ZAT18   <---------At4g35610  <-------GAMYB<---------ETT(2)xxxxxxxxxxxxxxxx>smallRNA(i)-------->P <xxxxxxxxxxxxxxxxsmallRNA(s)--- <---------MYB46(3)    --------->REM1(1)            <-----------HVH21<xxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --------->MYB52(2)    <-----------------AGL1      <---------ANAC58--------->ZAT14   --------->At4g35610 --------->MYB55(2)    <---------ALFIN1<---------ALFIN1 --------->At4g35610     <---------ZAT6 ------ --------MYB52(1)  <---------MYB59 <------NtERF2   <---------ANAC58<---------ZAT14 <-----------RAV1(2)   cgtttgttggtacccgctcgaccttacaccttttggccgagacacctcttcatccgtgagctaccacagtccaccagctcgagtgtcagatgaccagacc  12951700         --------------->AtSPL3         --------------->AtSPL8       <-----------HVH21  <---------At4g35610                   --------->STY1(2)        <---------At4g35610  --------->At4g35610          <---------ZAT2                    --------->At4g35610  ----------->RAV1(2)          <---------At4g35610         <------MYB46(1)         --------->STY1(2)  --------->ZAT2               --------->At4g35610         <------MYB83            <---------STY1(2)  <---------ZAT2               --------->ZAT2            <---------ANAC58      --------->STY1(2) -----------RAV1(2)           ------>MYB46(1)       <---------At4g35610    <---------ANAC58 --->MYB83                    ------>MYB83          ----------->RAV1(2)    <---------ANAC58 --->MYB46(1)         --------->ZAT2    <---------STY1(2)<---------ANAC58 <---------ZAT2 ------->MYB46(3)     <---------At4g35610           --------->At4g35610   --------->ZAT2        ----- ---->AtMYB61         --------->At4g35610           <---------ZAT2       ------>MYB46(1)        <---- ------>ANAC46     <------ZmHOX2a(2)   ------>MYB83 --------->ZAT2     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->MYB46(3)     <-----------HVH21    ------>MYB46(1)   <---------ANAC46------>MYB83        <xxxxxxx   acccagctgggtcagtactcgatcagctcacctagctcacctagctagtcttccagctggctggtttagctcacctagcttagctagctagttcatccag  12951800                                                                            <---------ARR11(3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                   ------>ZmHOX2a(1)              --------->STY1(2)                                    ==================HOX2a_HOX2a              --------->ZAT2                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------ZAT2                                   <---------MYB52(1)      --------------              <---------STY1(2)                                --------->ARR14(2)     ---------------     <---------At4g35610                                     <---------DEAR3(2)       <--------------     <---------ZAT2                                          <---------ANAC58         ---------------     --------->At4g35610                                     <---------ANAC58 ------>ZmHOX2a(2)     --------->ZAT2 <---------ZAT18                     --------->MYB59     --------->ARR11(3) ---->ZAT2   ------>MYB83        <---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<------------- -----ZAT2   ------>MYB46(1)     <---------ANAC58  xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) --------------- xxxxxxxxxxxxxxxxsmallRNA(fl3)<----------DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<--------------   cttgtccagctcacctagctggttcacttgaactttcttgttcttccgactaagtattttggtccgttcctcgaccatgatctagttttcccatagtggg  12951900                                                                     <---------ANAC55(1)                                                                     <---------ANAC55(2)                                                                     --------->ANAC55(2)                                         <------ZmHOX2a(1)           <---------ANAC58       <---------ANAC46            --------->ARR14(2)      <---------HSFB2a(2) ----------------->AGL1            <---------ARR14(2)      --------->HSFB2a(2) <---------YAB1                   <------NtERF2        <---------ANAC58        ----------->GT1 ->AGL15                         --------->LBD16       <---------ANAC46        <---------ANAC55(2)--- -->AGL2                        --------->RAP2.6(2)    <---------ANAC58     <---------YAB1       <--- ---AGL1                       <---------LBD16      <---------MYB52(1)   <---------YAB1         <---- -->AGL1                   <---------GLK1(1)      <---------ANAC58   <---------ANAC46           ----- --AGL15          ------->TEIL--------->MYB52(1)  <---------ANAC58   <---------ANAC58           ----- -->AG <---------ANAC58    --------->GLK1(1)     <---------TOE2(3) <-----------GT1             <----- ---AG <---------ANAC58  <------ZmHOX2a(1)      <-----------GT1    <---------AHL20(2)  <---------AHL20(2)   atgaccatagcggggagacgaacattaggaaatgccggaactaggatgttttacgttgcttctgcaaaattacttgttattatgtaaattttaacgagga  12952000           --------->AHL20(1)           <---------ARR11(3)           --------->ARR11(3)           <---------AHL20(1)          --------->CCA1(2)         <---------ARR11(3)         --------->ARR11(3)     ---------->DOF2                                                          <---------At4g35610 --->ZmHOX2a(2)                                                               --------->At4g35610 ---ZmHOX2a(2)                           --------->ANAC58                     --------->ZAT2  ------- -----ARR14(2)                           --------->ANAC58                     <---------ZAT2--------- ---->GLK1(2)                            --------->ANAC46              ---------->DOF2    <---------TOE2(3) ---->ARR14(2)              <----------DOF2     <-----------GT1     --------->TOE2(3)   <---------AHL20(2) -ZmHOX2a(1)  <---------AHL20(2)     --------->YAB1       --------->AHL20(2)<-----------RAV1(2)     -   tccgatataaagatatatttttgggtaactctttgccaagtataagctatatactatgcataaaatgttttcttaaagccagccgagtgtttaatgatat  12952100  Previous    Next  AGI:  At3g31945.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 5.5e-171 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family) Range:  from: 12944803    to: 12951613    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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