Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                   <----------DOF2                                                               <---                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                    ----        <----------DOF2                                    --------->HSFB2a(2)            <-------TEIL     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------YAB1   <---------At4g35610     <---------At4g35610 --------DOF2   --------->ARR11(3)   ------->TEIL          <---------HSFB2a(2)         --------->At4g35610   cttttctagtctttttcaggtctttacatgtttgatatgcatttggagattatagagcattctggagcaaaccagacaacttaagttgcagatgcagttc  12942900                                   ----------->RAV1(2)                               --------->AtMYB61                               --------->DEAR3(1)                              --------->MYB46(3)     <---------ICU4                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      <---------SPL7                <---------YAB1                    <------NtERF2------>MYB46(1)    --------->ICU4                   <-----------HVH21              --------->bZIP60(2)               <---------TOE1(2) ------>MYB83     <---------bZIP60(1)               <---------TOE2(2)--------->ABI4(1) --------->bZIP60(1)            <---------O2 --------->ANAC58  <---------ANAC58            --------->ANAC46 ------>NtERF2 --------->ETT(2)            --------->O2--------->SPL7  <---------ANAC46       <---------ARR14(2)--------->ANAC58  <---------ANAC58   --------->YAB1                    <----       --------->ARR14(2)--------->ANAC46 <------NtERF2<---------YAB1               --------->TOE2(3) ------->DEAR3(1) --------->ALFIN1 =========================RAV         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------At4g35610<------MYB83--------->ANAC46      --------->REM1(1)    --------->TOE2(3)        <---- ----->At4g35610<------MYB46(1)<---------ALFIN1 ----------->RAV1(1)   --------->At4g35610       <----   gcagaccaaaatccacgtaggtgtcgaacgacaccacccctggtgtcgagcgacatcattactatcttacttagcttaattcaaaaccttggtctattgt  12943000          xxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <----------DOF2        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <       <---------ARR11(3)                                                                          --       xxxxxxxxxxxxxxxx>smallRNA(i)                                                               <--    --------->LBD16                        <---------ARR11(3)                                     ---  ------>ZmHOX2a(2)                        --------->ARR11(3)                                     --- -----ANAC58                         --------->REM1(1)                                           <--- -----ANAC46               <---------MYB52(1)------>ZmHOX2a(2)                                   ---- -----ANAC58<---------ANAC46         <---------YAB1                                             <----   gtgatccgagagctttgtggaattcgacccttaagtgctacaattgatctcttgtttgagagagtggtcttaaggcaatttgacttatatcaaatttggc  12943100          --------->ARR11(3)    <---------HSFB2a(2) <---------MYB52(1) --------->ATERF1(1) -------GAMYB                                                                      <---------AHL20(2) ------->DEAR3(1)                                                              <---------AHL20(2) ----NtERF2                                                                <----------DOF2 ------>ATERF1(1)                                                        ---------->ID1 ------>RAP2.3(1)                   <------ZmHOX2a(1)                 <---------AHL20(2) ------RAP2.3(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------AHL20(2) -->NtERF2<---------ARR11(3)       <---------YAB1                <---------AHL20(2)<-----------GT1<-- -----DEAR3(1)        <-----------GT1                   <----------DOF2 <-----------GT1     <--------   gccgttgccgaagttctctacgattcaccattagattaggattagaattttgtctaagcttttattttttattttttctttttatttacttagtctttct  12943200                       --------->ALFIN1            --------->MYB52(1)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <---------ANAC46                       ------>MYB46(1)                     <---------ICU4            <---------ANAC58                       ------>MYB83                       <------ZmHOX2a(2)            <---------ANAC58                     --------->AtMYB61                   --------->ARR11(3)        <---------ANAC58                         --------->MYB46(3)             <---------ANAC58<----   <----------DOF2   <---------At4g35610         <---------MYB59                <---------ANAC46<---- --------DOF2      <-----------RAV1(2)        <------ZmHOX2a(1)                 <---------ANAC58----- --DOF2 <---------ANAC58             --------->ANAC46            *TSS     <---------YAB1        -----   cttttctttttcttgtgtgtttcaggtgtttgtctaatcacagaaccaggaccaaacgagaaacatgaacgagagtaagattgctgggatcatggctaag  12943300              <---------ATHB12       ===========================HOX2a_HOX2a       <------ZmHOX2a(2)      <---------ARR14(2)      --------->ARR14(2)  --------->ANAC46                                         --------->LBD16  --------->ANAC58                                  --------->ARR11(3)  --------->ANAC58                                  <---------ARR11(3) -----At4g35610            <------ZmHOX2a(1)       <---------RVE1(1)            ------>MYB83 -----ZAT2   --------->ANAC58                     ----------->ARR10             ------>MYB46(1) ---->At4g35610          <---------ANAC46<-------TEIL  <-----------GT1          -------->P         -- ---->ZAT2   --------->ANAC58         <---------YAB1<---------GLK1(2)--------->CCA1(2)      <--------   ctgaacgcgatccacaatcaacttgtggaggatgtcgattatgttcatagcagagattttccgaatcagagatttgatcaccaacaaggctacataggtt  12943400                                                                                          <---------ARR11(3)                                                                                          --------->ARR11(3)                              --------->ARR14(2)                                         --------->YAB1                      <---------ALFIN1                                          --------->ANAC58                     --------->ZAT14          -------->P ---------->DOF2        --------->ANAC58       --------->HSFB2a(1)    --------->GLK1(1) ------->GAMYB                   --------->ANAC46<----       <---------HSFB2a(1)--------->YAB1     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------YAB1 ---->ZmHOX2a(1)------->GAMYB <---------GLK1(1)--------->MYB46(3)       --------->At4g35610     <---- -TOE2(2)    <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->MYB46(3)          <---------At4g35610 ------>ZmHOX2a(2)   cctatgggaatggtccaacgagctacactcagaattctcaattctagcaaccgcttcagaatagcaatagtttcagcttcacaagaaactatgatcttgc  12943500                <---------ALFIN1               <---------ALFIN1                                                                   ---              <---------ALFIN1                                                                    ---             <---------ALFIN1                                                      <---------ARR14(3)             <---------ATERF1(1)                -------->ATHB1                     --------->ARR14(2)           <---------ATERF1(1)     --------->ANAC58                                --------->GLK1(2)           --------->DEAR3(1)      --------->ANAC46                                --------->ARR11(3)           <---------ALFIN1      ---------->DOF2<---------ICU4                     <---------ARR14(2)          <---------ATERF1(1)  --------->HSFB2a(2)                                 <---------ARR11(3)         --------->DEAR3(1)<---------ALFIN1     --------->ATHB12            ---------->DOF2     <----      --------->ANAC58  <-------PIF5           <---------ATHB12   <---------HSFC1(1)<------ZmHOX2a(2)      --------->ANAC46  ------->PIF5        ------------>ATHB5    --------->HSFB2a(2)        --------      --------->ANAC58 ----------->RAV1(2)<---------------------WRI1   ----------->GT1      ---------      ------>MYB46(1)<---------ALFIN1     <------ZmHOX2a(2)       <---------HSFB2a(2)------>ZmHOX2a(2)      ------>MYB83--------->ANAC46 --------->ANAC58           --------->ARR14(2)   --------->ARR14(3) -----ANAC58<---------ALFIN1------->TEIL <---------ARR11(3)   <---------ARR14(2)   <-----------ARR10 -----ANAC58<---------ATERF1(1)<---------HSFB2a(2)            <---------GLK1(2)   <------ZmHOX2a(1)   ttcttaccaagccccccccccctccacctgcacctagaagcaagatcgaatcattgaaggaacatattctcgaaggtcaaaagaggatcttagagtgacc  12943600                                                                                      ----------->TGA1                                               <---------ANAC46                       ----------->HVH21 --->MYB83                                  <----------DOF2                       ---------->DOF2 --->MYB46(1)              --------------->AGL15                                 <------ZmHOX2a(1) -----MYB59      <---------At4g35610<---------ANAC58                           <---------TOE2(3) ->ZAT18         --------->At4g35610<---------ANAC58                     --------->ICU4 -->HVH21     ---------->DOF2    --------->HSFB2a(2)---------->DOF2      <---------YAB1   tatccctagatggaatgaaagcagcctcactacttctggcatgctgcttcagtggaaagtgagtatgagttagtgaagattgaggaaagtgacgattttg  12943700                           ------>MYB83                           ------>MYB46(1)                         <---------ALFIN1                         --------->AtMYB61                         --------->DEAR3(1)                        --------->MYB46(3)                       ------>NtERF2                      --------->ANAC46                   --------->ANAC58                   --------->ANAC58             <-----------HVH21                   --------->ANAC46            --------->AtMYB61                <---------SPL7               ------>NtERF2             <-----------HVH21              --------->ANAC46         --------->DAG2            --------->ALFIN1             --------->ETT(2)   --------->ANAC46 <---------REM1(1)--------->SPL7         <---------ETT(2) <-----------GT1     <---------REM1(1)   aagttgtagaggcagtgtcgaacgacaccacccttggtgtctatcgacaccatcacatatatacgagacataaggctgtgatgaagcaaaatcgaccatg  12943800  Previous    Next  AGI:  At3g31940.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07460.1) Range:  from: 12943265    to: 12944247    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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