Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                                                                                                   <-        <---------AHL20(2)                                                                         --        <---------YAB1                                                                        -------        --------->AHL20(2)                                                                    -------       --------->TOE2(3)                                                                    <--------     --------->ICU4                                <---------AHL20(2)                    ---------->DOF2  <---------YAB1                                  --------->AHL20(2)                  --------->YAB1 -------->YAB1                       --------------->AGL15                           <---------ATHB12 -----GT1                            --------->HSFB2a(2)      <----------DOF2      --------->WOX13(1)   atttataaatattaatacatttaacagaaaaaaaactttcgagatttagaaattttataaattcctttcgatagcttcttctccccaatcaaaatgcgga  12835400                                                                                   --------->ANAC55(2)                                                                                   <---------ANAC58                                                                                   <---------ANAC55(2)               --------->AHL20(2)                                                  <---------ANAC58           --------->AHL20(2)                                                    <-----------GT1     ----------->GT1                                                         <---------AHL20(2)    <---------TOE2(3)                                                       <---------MYB52(1) ------->ARR11(3)                           --------->YAB1                <---------ZAT6 ----------ARR10--------->AHL20(2)         <---------YAB1                 ----------->GT1 --------ARR11(3)<---------YAB1          --------->YAB1               <---------SPL7                < ------->GLK1(2)<---------AHL20(2)      <---------YAB1              <---------------AtSPL3         <- ---->GT1  <---------AHL20(2)    <-----------GT1                 ------->TEIL--------->AHL20(2)    <- -->LBD16  <---------AHL20(1) --------->ARR14(2)  <---------AHL20(2)--------->ALFIN1     <---------CCA1(2) -LBD16    --------->AHL20(1) <---------ARR14(2) --------->AHL20(2) <---------------AtSPL8        <--   aaatctaatgtaataaattaaaattccatgtcgatttgccatatgataatattaaatctctcatacgaatgtggtacagttaattacgttcttatcttcc  12835500              --------->ARR11(3)              <---------ARR11(3)            <---------YAB1         <---------MYB52(1)        --------->TOE2(3)       --------->ANAC55(2)                                                                 --------->ARR11(3)      <---------TOE2(3)                                                                    <---------ARR11(3)     <-----------GT1                                      <----------DOF2                 --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------DAG2                 <---------WOX13(1) ---------AHL20(2)                                    <-----------GT1      <---------AHL20(2)  ------ --------AHL20(1)      <---------ARR11(3)          <---------ICU4          --------->AHL20(2)  <----- --------ARR11(3)      <---------AHL20(1)      <---------YAB1       ----------->GT1  ------>ZmHOX2a(1) -------CCA1(2)       <---------CCA1(2)       <-----------GT1 <-----------GT1      <---------LBD16   atatattttacgttattatcttccatatatttccaaatatttggaaattttcatttttacctttttacgagagttatttatattttcctgaatgatatta  12835600                                                                      --------->CCA1(2)                                                               --------->TOE2(3)                                                             <---------YAB1                                                             <---------TOE2(3)                                                            <-----------GT1                                                       --------->AHL20(1)                                                       <---------AHL20(2)                                                       --------->ARR11(3)     <---------YAB1                                                  --------->AHL20(2) --------->ARR11(3)         --------->TOE2(3)                     --------->AHL20(2)  <---------YAB1<-----------GT1        ----------->GT1               <---------ICU4   <---------ARR11(3)   <---------CCA1(1)    <---------AHL20(2)               <---------YAB1    <---------AHL20(1)  <---------ARR11(3)    --------->AHL20(2)              <-----------GT1    --------->AHL20(2)  --------->ARR11(3) --------->AtSPL8                  --------->YAB1 <---------AHL20(2) <---------ARR11(3) ----------AtSPL8               <----------DOF2<---------AHL20(2)  <---------TOE2(3)    <---------HSFB2a(2)   gtacataaaaatgttaatcgttcatatagttttccttttatcatttcaattttttaatatattaacattaagatatagatattatacattctcgataaat  12835700                                                           <---------ATHB12                             --------->MYB52(2)            ------------>CBF                           <--------P  <---------------AGL15    --------->ATHB51            <---------AHL20(2)        ----------------->AGL3    --------->YAB1           --------->YAB1  <---------MYB52(1)       ----------->GT1        --------->YAB1    <-------GAMYB--------------->AGL15 --------->WOX13(1)           --------->GLK1(2)   --------->TOE2(3)     <------MYB83 <-----------------AGL3--------->AHL20(2)            <---------ARR11(3) <---------ARR11(3)      <---------MYB46(3)       <------------CBF                        --------->ARR11(3) <-----------ARR10       <------MYB46(1) ----------->TBP<---------AHL20(2)               --------->RVE1(1)   acaaatcttagtataatattatgtagttggttagttcgatactatatatagagattgtttaatcaattatcgaaatactcatacattctaaaaatcttcc  12835800                                                                             <------ZmHOX2a(2)                                                                            <---------ARR11(3)                        <------NtERF2                                <---------ZAT14                      *TSS                                           --------->ZAT18              --------->YAB1                                        ================HOX2a_HOX2a           <------------CBF                                         ------>ZmHOX2a(1)         <---------AHL20(2)                                       ------>ZmHOX2a(2)    <---------YAB1    <---------ANAC46                          --------->ARR11(3)                 <-   <------------CBF   <---------ANAC58              ----------->HVH21--------->ZAT14               -- --------->ICU4       <---------ANAC58            <---------At4g35610<---------ZAT18       <---------TOE2(3) <---------YAB1  <---------ICU4          <----------DOF2     <---------WOX13(1)           ---------->DOF2   atacttattgttatattgatcatggcgtctactcttacgaattcttttgtttatctgatggagattgatcctgcactagatcaatacaagattaaagtac  12835900                                                                                --------->ATHB51                                                                                --------->ATHB12                                                                                --------->AHL20(2)                 ------>ZmHOX2a(2)                                              <---------AHL20(2)                 ----------->GT1                                               <---------AHL20(2)                <------ZmHOX2a(2)                                              --------->AHL20(2)        <----------DOF2                                                        <---------AHL20(1)   <---------MYB52(1)                                                       <---------AHL20(2)   <--------P  --------->ARR11(3)            <---------MYB46(3)             --------->AHL20(2)     <- <---------MYB46(3)   ---------->DOF2    <-----------RAV1(1)               --------->AHL20(2)     <-- ------MYC3    <---------ARR11(3)   <---------HSFC1(2)                  <----------DOF2      -------- ----->MYC3   <---------GLK1(1)     --------->HSFC1(2)             <---------AHL20(2) ---------->ID1   gcgtggttagctttggagatcgtttaaagctatagagatggttctggtggatgagaggtattgttgtattttttcttttaaattatttgtcgttataatg  12836000                                     <---------ICU4                                     <--------HAHB4                                     --------->ATHB12                     <---------AHL20(2)              --------->YAB1       --------------->AGL15              ----------->GT1     <-----------------AG                        <---------MYB46(3)    <---------ANAC46--------->AHL20(2)                                        ----------->GT1    <---------ANAC58<---------AHL20(1)                                    --------->ATHB12    <---------ANAC58<---------AHL20(2)                                    <------ZmHOX2a(1)         < --------AtLEC2     --------->AHL20(1)                     <---------ANAC58   <------MYB83     ------ -----TEIL<---------YAB1     <---------ICU4  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           -------- ->YAB1   <---------AHL20(2) --------->ARR14(2)            <---------ANAC58   <------MYB46(1)<-------   ttcatggcgttttttattgtaatttattcaatatttgcatcattagggaacaagaattcatgcgtccatcgaagaaggattggttaagaggtttcagcac  12836100                                                       --------->At5g28300                                                     <---------ANAC46                                                     <---------DEAR3(1)                                <----------DOF2   <---------YAB1 ---------MYB52(1)        --------->ETT(2)        ----------->TGA1           --------->MYB59 ----->RAV1(1)          <-----------GT1         <---------ICU4               <---------TOE2(3) ->At4g35610    --------->At4g35610   <---------MYB52(1)   <---------YAB1    <---------TOE1(3) --At4g35610 ---------->DOF2 <---------ALFIN1  --------->ICU4    <------ZmHOX2a(1)   cagtttgttaatggtgaaagcagaattatcgacactttcagttttgttgattatgacggtgactataggacgagtagtttaggtttcaaaatagtcttct  12836200                                                                                                  <--                                                                                                  <--                                                                                              -------                                                                                             <-------                                                                                         <---------ARR11(3)                      ----------->HVH21                 --------->At4g35610              --------->ARR11(3)           --------->At5g28300               --------->At4g35610                         <---------ARR14(2)          ----------->GT1      <-----------GT1          <---------At4g35610              --------->ARR14(2)        <---------ZAT14       <-----------GT1<---------At4g35610                       ----------->ARR10   atagaactactacggtgaaaccctgtgacaattttccctctcaattttgctgaaattttgctgaaattttgtctcggacattagacaggcagatattgat  12836300  Previous    Next  AGI:  At3g31510.1    Description:  pseudogene, hypothetical protein Range:  from: 12835822    to: 12838126    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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