Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <-------MYC4                                      ------->MYC4                                      <-------MYC3                                      ------->MYC3                                      ------->PIF5                                      <-------PIF5                                      ------->PIF4                                      <-------PIF4                                      <-------MYC2                                      ------->MYC2                               <-----------HVH21                             <---------At4g35610                                       <---------MYB52(1)                             --------->ZAT2                                          <---------MYB46(3)                          --------->At4g35610                                        <------MYB46(1)                          <---------At4g35610                                 ---------->DOF2                       <------NtERF2 <---------TGA1a                        --------->HSFB2a(2)                     <---------LBD16 --------->TGA1a                  --------->ARR14(2)        -----                     <---------ANAC46--------->O2                     <---------ARR14(2)        -----                     --------->ETT(1)<---------O2                     <---------ARR11(3)        -----          =====================================bZIP_DOF               --------->ARR11(3) --------->MYB52(2)         --------->MYB52(2)  --------->At4g35610                      <-----------ARR10<--------P  <---------REM1(2)<-----------HVH21------------>OsbHLH66        <-----------GT1     <------MYB83---- ----->ID1<----------DOF2 <---------ZAT2                 ----------->GT1    <---------HSFB2a(2) <----   cgtcttcacgttctttggcgatgtcgggagcagcttcacacgtgcaagtccgactggtcttgtaattttgcagttcttcccaaagcttggttagtctccc  12668500                                 --------->ANAC58                               <---------ALFIN1                              <---------REM1(2)                           <---------ANAC46 ---->ANAC46               <---------ANAC58 ---->ANAC55(2)            <---------ANAC58 ------>GT1      <-----------GT1 --------->ANAC58 ----->LBD16     <---------WRKY18(1)                                <---------ALFIN1      <---------MYB52(1) -----ANAC55(2)<---------WOX13(1)--------->ANAC46     --------->MYB46(3)              --------->GLK1(2)   gtaataaacaagaacagattgaccatcttgcttacacgccaaaatttcatctttcaacaattgtttacgaacaccgtttccattggagaatcgttgtttg  12668600                            --------->ANAC58                     --------->At4g35610              <------MYB83                     <---------At4g35610              <------MYB46(1)              <----------DOF2                       <--------P             ------>ZmHOX2a(2)                     <-------GAMYB            <------ZmHOX2a(2)                     --------->ATHB12            <---------RVE1(1)                     <------MYB46(1)           --------->ARR14(3)                     <------MYB83           --------->ARR14(2)            --------->WRKY12                             --------->YAB1           <---------ARR14(2)            --------->WRKY38(1)    <---------TOE2(3)    <---------YAB1           <---------ARR14(3)        --------->MYB46(3)  <------ZmHOX2a(2)         --------->YAB1           --------->ARR11(3)   --------->ANAC58  <---------MYB46(3)         ------>MYB83          --           <---------ARR11(3)   --------->ANAC58  --------->MYB55(2)         -------->P    <---------GLK1(2)       ---------->DOF2      --------->ANAC58     <---------AtMYB61           ------>MYB46(1)       <-   agactatcccaaagatcttttgcatcagacacgaaggcaaccgttgaacggatggttggatcaattgatgttctaatccaacctataatcatagaatttg  12668700                            <---------MYB46(3)                            <-----------RAV1(1)                          <-------GAMYB                      <---------ARR14(2)                    <------MYB46(1)                    <------MYB83                    <---------HSFB2a(1)                    --------->HSFB2a(1)                    <---------HSFC1(2)        --------->SPL7               --------->ANAC58    <----------DOF2   --------->ANAC58               --------->ANAC58   <---------ANAC58   --------->ANAC58          <---------YAB1 <-----------RAV1(1)<---------SPL7        --------->YAB1--------->GLK1(2)    <---------ANAC58        <---------ICU4--------->ARR14(2)  --------------->AtSPL8       --------->ICU4<---------GLK1(2)    <---------------AtSPL3           <---------ANAC58   <---------------------WRI1     <---------ANAC58   --------->ANAC46      <---------AtLEC2 <----------DOF2  ======================RAV<---------ANAC58                <---------ANAC58 ------->At4g35610<-----------RAV1(2)<---------AtMYB61       --------->LBD16                  <------ --------At4g35610===================RAV  --------------->AtSPL3           <---------ANAC46   -------   cagctttccatgatgacaaggcaggttctgttgttggctttggtatcgtaccatcaaggaacccgagtttttgttttgcctgaagagaattcatgagttc  12668800                                                      --------->LBD16                                                     <---------LBD16                               --                                                    <---------LBD16                               <--                                                 <---------ABI4(2)           --------------->AGL15---                                          <---------GLK1(1)        <-------TEIL                  <---        --------->YAB1                    --------->GLK1(1)     <---------At4g35610            ------ <---------At4g35610             --------->MYB52(1)--------->MYB52(1)  <---------ZAT6         <------ ---ARR11(3)              --------->AHL20(2)  ---------->DOF2   --------->At4g35610<------ZmHOX2a(1) -->ARR11(3)            <----------DOF2 <------ZmHOX2a(1)   <-----------HVH21<---------------AGL15<--   ttcagcccattcagagtaattgtcttcttttaatataacagaggaaatcaaagcaccgggattgtcagatgcagtgataccataaggagatggagtagtc  12668900         <---------At4g35610         --------->At4g35610   --------->SPL7  ------>NtERF2 ------->LBD16 -------O2                                                      <---------AHL20(2) ------>O2                                                 <---------ARR11(3) ------LBD16                                               <---------AHL20(1) ----->HVH21           *TSS                                --------->AHL20(1) -----HVH21 <---------LBD16                            --------->YAB1 -------ANAC46--------->LBD16---------->DOF2        ----------->GT1   ---------->DOF2   acggggacgatagctccggacatagtgatgacaaagtagaagagagaaacgatgcagtcaaaatatttgatttaaagcaaaacttgctctgataccatga  12669000               <------MYB83               <---------MYB46(3)               <------MYB46(1)              <---------AtMYB61             ============================MYC_MYB                          <---------ANAC55(2)             <--------P         ------->MYC3                              --------->ANAC58           <-----------RAV1(1)  <-------MYC3                              --------->ANAC58           --------->ALFIN1    <---------TGA1a                            --------->ANAC46        --------->DAG2         --------->O2                               --------->ANAC55(2)       -       ==================================bZIP_DOF                         ----------->GT1          --       ---------->DOF2         --------->TGA1a              --------->MYB52(1)  ---------->DOF2   <--    ----------->GT1            <---------O2 <---------AHL20(2)            --------->ANAC55(1)  <-----   aataagtcgtaaagtgttggtttattcattcacacatgggttctatttatacatcgagagaataagggtttacaacaagtaataaagcccattacggtcc  12669100            ----------->RAV1(1)           <----------ID1                                           ---------->DOF2       --------->At4g35610     <---------YAB1                                         ------>ZmHOX2a(1)             <---------At4g35610   --------->YAB1                                     --------->HSFB2a(1)           <---------At4g35610  <---------YAB1                                      <---------HSFC1(2)            --------->At4g35610 -------->YAB1                                        <---------HSFB2a(1)           ----------->RAV1(2) ------->AHL20(2)                         <---------ANAC46  --------->LBD16  --------->ANAC58 -------MYB52(1)                <-----------GT1       --------->At4g35610    --------->ANAC58 --TEIL   --------->ZAT18    <-----------GT1          --------->HSFC1(2)<----------ID1--------->HSFB2a(2)   attaattataagtgcaacaaaatgaagaatttttctaccttgttatgtagaacagaagcttcctggtcaaaaaagagccaagcctcatctggagctatct  12669200                                  <<<<<<<<<CBP60g                                  <<<<<<<<<SARD1                                 ------>MYB83                                 ------>MYB46(1)   --------->AHL20(2)                               ------->GAMYB     --------->AHL20(2)                    --------->ANAC58                             --------->ANAC58  <---------RVE1(1)                       --------->ANAC58                             --------->ANAC58 --------->ARR14(2)         ---------->DOF2                            ------->GAMYB     <---------ARR14(2)   --------->ANAC58 <---------At4g35610             --------->WOX13(1)<---------MYB59<---------ARR11(3)   --------->ANAC58 --------->At4g35610           <---------ATHB12--------->MYB46(3) <---------GLK1(2) --------->ANAC46--------->AtLEC2 <---   gtgcatcaattgaatcattcagtcccataacaaccaaatttcaaaccagatttttatatatcatacaagaagcaatatagccatgcagcaaacaattacc  12669300                                                    <-------MYC3                                                    ------->MYC2                                                    <-------MYC2                                         <---------YAB1                                      <----------DOF2           --------->ZAT14                                     <---------ANAC46           <---------ZAT14                 -----          <--------P                 <---------ANAC58   <---------ANAC46                  ---------->DOF2       <---------TOE2(3)         <-------GAMYB   <---------ANAC58                     --------->TOE1(2)       --------->DAG2            <---------At4g35610------->MYC3--------->ZAT18     --------->GLK1(2)       <---------TOE1(3)    <---------LBD16      <---------AtLEC2                  --------->ARR14(2)     --------->CCA1(2)--------->YAB1 <---------ANAC58--------->ALFIN1              <---------ARR14(2) -------DOF2  <----------DOF2   --------->ALFIN1 <---------ANAC58                  <---------GLK1(2)   tttggagataaggtagctttagaatcatcttggggagttgcttttgattttgcatgtggagggaagttcacagataagaagttcagaacctgcaaagttt  12669400  Previous    Next  AGI:  At3g31023.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.0e-152 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 12665627    to: 12668923    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version