Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <------ZmHOX2a(1)         ---------->DOF2                               <---------MYB52(1)       ------->GAMYB                                 <------NtERF2                           --------       --------->AtMYB61                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->DAG2      --------->MYB46(3)                      ------>ZmHOX2a(1)                     <------ZmHOX2a(1)     --------->ANAC58                     ------->TEIL--------->LBD16             --------->LBD16     --------->ANAC58                     <---------ARR14(2)                     <---------LBD16     -------->P                           --------->ARR14(2)                     <---------HSFB2a(2)   --------->MYB46(3)               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->HSFB2a(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------CCA1(2)     <-------GAMYB    xxxxxxxxxxxxxxxxxxxxx  --------->At4g35610            --------->MYB52(1) <---------LBD16   <------ZmHOX2a(1)  ---------->DOF2  <---------At4g35610           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   gttcagcaaccaaaaggacttgcatcaactcggaataacgagtgtatcctttggcccggtattgctgttgaaggattacatttccaggatgaaaagtgga  12610300                                                                                            <--------                                                                                           ------>MYB46(1)                                                                                   <---------ICU4                                                                                   --------->YAB1                                                                                  <---------YAB1                                                                                --------->YAB1                      xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------ICU4                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <---------YAB1                   <---------LBD16            <xxxxxxxxxxxxxxxxxxxxx                 --------->YAB1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ICU4  <-----              <---------CCA1(2)       <---------ALFIN1   <---------At4g35610<------NtERF2  -------->P            --------->YAB1           --------->ANAC46------>ZmHOX2a(1)     --------->LBD16 ------>MYB83           <---------ATHB12        <-----------GT1 ----------->RAV1(2)    <---------ANAC46----------- ->ALFIN1--------->WOX13(1)   <---------DAG2  <---------ARR11(3)         <---------LBD16 --------->AtMYB61 x>smallRNA(si3)<---------YAB1<----------DOF2 --------->ARR11(3)  --------->LBD16--------->AHL20(2)   gagcgttttttcaatcatatcataatcgctcactttttcaccacataatatcatcctggaggtgattccgaacatggcggaattataatcaccaacactt  12610400                                                                                                -----                                                                                                =====                                                                                                <----                                                                                      <---------WOX13(1)                                                                                 --------->ANAC55(2)                                                                            =========================                                                                            ------>ZmHOX2a(2)  ------                     <-----------GT1                                       ==========================             --------->LBD16          <----------DOF2                      <------ZmHOX2a(2)   ------ -ALFIN1---------->DOF2              <---------ANAC58              ------>ZmHOX2a(2)--------->ATHB12 xxsmallRNA(i2)  --------->ARR11(3)  <---------ANAC58          <---------YAB1<----------DOF2   <----- -----DOF2 <---------LBD16 <---------ATHB12         <---------ANAC55(2)   <---------ARR11(3)   <----- >RAV1(1) --------->MYB52(1)--------->YAB1          --------->ANAC55(2)   --------->ARR11(3)   ------   ttgtaatccaaaaaccggagatttagccattcatgtctggcttttggcaaaatcacatatttttgatgatcgaaacgatctttaagtgattgccatagat  12610500      ------>ZmHOX2a(2)     <------ZmHOX2a(2)    --------->ARR14(2)    --------->ARR11(3)    <---------ARR11(3)    <-----------ARR10    --------->ARR14(3)    <---------ARR14(3)    <---------ARR14(2)   <---------GLK1(2)                                 ----------->GT1   <------ZmHOX2a(1)                                 <---------ANAC58                              <- ---->CCA1(2)                                        <---------ANAC58                              == =========HOX2a_HOX2a                                <---------ANAC46                         <------ --ZmHOX2a(2)                                       <------NtERF2                             <------ =========HOX2a_HOX2a                             <---------DEAR3(1)                       <---------bZIP60(1) --->AGP1                                      <---------AtMYB61             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) =========HOX2a_HOX2a                          --------->ALFIN1         <xxxxxxxxxxxxxxxxxxxsmallRNA(i2) --->ARR14(2)                          <---------ANAC46               <----------DOF2 --------->At4g35610 ----ARR14(2)                          <---------ANAC58              <---------ANAC58 <---------At4g35610 ----ARR11(3)                          <---------ANAC58<------NtERF2 <---------ANAC58 ----------->RAV1(2) --->ARR11(3)     <---------ANAC46    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  <----------DOF2--------->bZIP60(1)   ccacaggatcttctctcgtgatgtattcatttttcaaattgtcgtggagatggtggcgtagaaataccatggctttagctttgctctcatctgatgtcgt  12610600                                                                                      <xxxxxxxxxxxxxx               <---------At4g35610                                                   <-------TEIL      ------->TEIL                                                                  --------->CCA1(2)    <-------TEIL                                                                   --------->ARR14(2) <---------At4g35610                                                         <-----------GT1       -- --------->At4g35610                               <---------ARR11(3)    --------->ICU4           <xx ----------RAV1(2)                                --------->RVE1(1)   <---------AHL20(2)          --- ======================RAV                 ------->TEIL        ----------->HVH21   <---------ARR14(2) ---ANAC58     --------->At4g35610       <-------TEIL  --------->At4g35610<---------ICU4          --- ---ANAC58 <-----------RAV1(1)    ------>ZmHOX2a(2)--------->ARR11(3) --------->AHL20(2)         <xxx   ttcagatgcatctatggtgctgagaagcccatttgatctaagatgcatcttaatatctgatgcccatgacatataatttttaccagatacatcaagggca  12610700                                                         <---------AHL20(2)                                                      --------->WOX13(1)                                                 <---------ICU4                                                <---------ATHB12                                                --------->ICU4                                                <---------YAB1   <---------------AGL15                                              --------->YAB1     --------------->AGL15                                             <---------AHL20(2) <-----------------AGL2                                          --------->AHL20(2)    <-----------------AGL3 xxxxxxxxxsmallRNA(si3)      *TSS    <---------AHL20(2)  --------->AHL20(2) ----->GAMYB             <---------YAB1  --------->AHL20(2)     ----------------->AGL2 xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->AHL20(2) <---------ATHB12                          <xx ------>ANAC58           --------->ICU4  <---------AHL20(2)     ----------------->AGL3        ------>MYB83 ------>ANAC58      ----------->HVH21----------->TBP------------>CBF                          ------>MYB46(1) xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  ----------->TBP--------->WOX13(1)                          -------   acgacatcgagcttagctagatttgacatgattatctatataaataaataatcattcaattaatgagccatttatggcatttcgaatagcatagcctacc  12610800                                                                               >>>>>>>>>MYB98                     --------->TOE2(3)                                        <-----------GT1                  <-----------GT1                                           --------->AHL20(2)   ----             ----------->GT1                   --------->AHL20(2)  <---------AHL20(2)            ----           <------ZmHOX2a(1)               --------->YAB1          --------->AHL20(2)       xxxxxxxxx         --------->ALFIN1                --------->ANAC58         --------->YAB1            xxxxxxxxx        <------ZmHOX2a(1)                --------->ANAC58     --------->AHL20(2)--------->YAB1<------ xxxxxxxxxxxxxxsmallRNA(i)           --------->ARR11(3)  <---------YAB1   ------->TEIL --------->AHL20(2) ->P  <---------TOE2(3)        --------->LBD16 <---------AHL20(2) --------->AHL20(2)   <---------AHL20(2)   attcgattaaggaggaggtataacctcatactccgaaaatatcaagcatataatttcttataaatgaattaaaatgaatttaacataatttaaatgttac  12610900                                <-------GAMYB                         ----------->GT1                               <------MYB83                         <---------ANAC55(1)                               --------->MYB55(2)                   <---------ANAC58                               --------->MYB52(2)                   --------->ANAC55(2)                               <---------MYB46(3)                   <---------ANAC58                               <------MYB46(1)                <---------YAB1                              <---------MYB46(3)              <xxxxxxxxxxxxxxxxsmallRNA(s)                              <---------AtMYB61             <xxxxxxxxxxxxxxxxsmallRNA(s)        <---------ANAC58     <--------P                     <---------At4g35610        <---------ANAC58     <---------MYB52(1)          ------>ZmHOX2a(2)       <-----------------------TaNAC69(2)               <xxxxxxxxxxxxxxxxsmallRNA(s)      <---------YAB1       <---------MYB46(3)           <------ZmHOX2a(2)    ---------->DOF2 ---------->DOF2          ------>ZmHOX2a(2)   --------->LBD16 <xxxxxxxxxxxxxxxxsmallRNA(i) ----->TOE1(3)           <------ZmHOX2a(2)    xxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------TOE2(3) ----->TOE2(3)          --------->ARR14(2)   --------->HSFB2a(2)    <---------ANAC46---------->DOF2 xxxxxxx>smallRNA(i)    <---------ARR14(2)------->GAMYB<---------ARR14(2)  <---------YAB1 xxxxxxxxxxxxxx>smallRNA(si3)<---------MYB55(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----GT1      xxxxxxxxxxxxxxxx>smallRNA(s)  <---------HSFB2a(2)    <---------ANAC55(2)   ctcaaaagatgcttgatcaaatagacgatcggttggttagacaactcccagagagacgatcgtgctgataacgtgttataaaagattaaagtaagaagga  12611000                                               <----------DOF2                                              <---------ANAC58                                              <---------ANAC58                                        <---------YAB1                       <-----------GT1   <-----  ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <----------DOF2   xxxxxxxxxxxxxxxxxxx   agaataaagactagagagaataaaactcaaaaccagagttttcttattgctttctatttctcttctcttttctctctattttctctataacttacaaatg  12611100                                                                                   --------->TOE2(3)                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                                                                                 <---------ARR11(3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                             --------->MYB52(1)  --------->ARR11(3)                                                          --------->ANAC55(2)    <---------ARR11(1)                                             --------->AHL20(2)        --------->YAB1 ---------->DOF2      ----------->GT1                 ----------->GT1     <---------ANAC55(2)   <---------CCA1(2) ----ATHB12                         <------ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ---- xxx>smallRNA(i2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)   aatgaaatgagttatatatagtagggtttacttagctaggaagtaaattacttagcgaataagtaatggataaacatcatccatatcttaaagaagaagt  12611200  Previous    Next  AGI:  At3g30843.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08056.1); similar to Integrase, catalytic re (GB:ABE86211.1) Range:  from: 12609750    to: 12610729    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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