Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                                                  ---                                                                                                 ----                                                             --------->STY1(2)                 <-----      <<<<<<<<<ARR2                                 --------->ARR14(2)                     ------>ZmHOX2a(1)      <<<<<<<<<ARR1                ----------->RAV1(2)   <---------AtLEC2                 <---------ANAC58 --->ATHB12    <---------At4g35610-------->P        <---------ARR14(2)                    --------->TOE2(3) ->DOF2--------->YAB1  <---------YAB1            --------->ALFIN1  <----------DOF2        <---------ANAC58   ttgaaacaatcgtagagagcttattgtgatttgtgcaacctggatagagaggtgtttctgcatagctagctttgttgaaaactcaacttcttccttatca  12572100                                                                                                    <                                                                                                    -                                                                                                   --                                                             -------->P                            --                                                           --------->MYB46(3)                      <-                                                     <----------DOF2                            <----                                                   --------->At4g35610                     <---------ANAC58 ----->MYB46(1)                                    --------->ZAT2     --------->RVE1(1)    <---------ANAC58 ----->MYB83                 <---------ARR11(3) --------->ZAT2       <---------ARR11(3)    <---------ANAC46 ------>MYB46(3)         --------->MYB46(3)     <---------ZAT2 ------->GAMYB      <---------At4g35610 ----->At4g35610   <---------WRKY18(1)          --------->At4g35610  --------->ARR11(3)<---------ANAC58 ------GT1<---------ICU4-------->P              <---------At4g35610  --------->GLK1(2) <---------ANAC58   ccagcctcatcaacatcaccttgactaaccagctcttcatctataaactcagcagctttgaacaacccaaaaatctcttggttccactgacttgcgttct  12572200         <---------ARR14(2)         <---------GLK1(2)         --------->ARR11(3)         --------->ARR14(2)   --------->YAB1 ---------------AGL15                            <---------ALFIN1 -------------->AGL15           <---------YAB1  --------->LBD16 --------------->AGL2         --------->YAB1 --------->SPL7 --------------->AGL3         <---------ICU4--------->ATERF1(1) ----------------AGL3        --------->ICU4<---------SPL7 ------DOF2        <-----------GT1 <-----------GT1                             <-----------GT1-------   ttctataatcagatactgatttcacttctccatgatgataccagtcgtcccccaacttataactccaatccattccccttgttacaagatgatcaacaac  12572300                 <---------WRKY38(1)                 <---------WRKY12            <-----------------------TaNAC69(2)                                  <---------ALFIN1          ----------->HVH21                                                   ----------->RAV1(1)    <---------At4g35610                            <---------ICU4           ------>NtERF2    --------->ZAT2 <---------TOE2(3)               --------->YAB1        --------->ZAT2    --------->At4g35610               <---------LBD16                    --------->At4g35610       -- <---------At4g35610      ----------->RAV1(1)     <---------YAB1      ----------->RAV1(2)          -- --------->At4g35610     ----------->HVH21      --------->YAB1        ====================RAV      -- ---->RAV1(1)   <------ZmHOX2a(2)   <---------REM1(2)             ------>ZmHOX2a(1) --------->ANAC46-   atcagcagctaagtgacgatcaacgttgcgacagtcaatacacgggcaaataatcatcgcattttctcctaaacctgcagccacatacctcacaaaatcc  12572400                              <---------AtLEC2                                      <-----------GT1                         --------->ARR14(2)                                    --------->WOX13(1)          --------->YAB1 <---------ARR14(2)           <-----------GT1        ------------>CBF    <---------ALFIN1  ------>ZmHOX2a(2)        --------->ANAC58             *TSS  --------->AHL20(2) ------->ANAC46     <---------ARR14(2)         --------->ANAC58         >>>>>>>>>MYB98 ------->ANAC58     --------->ARR14(2)       ---------->DOF2           <-----------GT1         <----- ------->ANAC58 <---------LBD16          <---------At4g35610          <-----------GT1 --------->MYB46(3) -------->MYB46(3) <------ZmHOX2a(1)     --------->At4g35610         --------->AHL20(2)       <------   caagcaccactctcataaccaggatcggttctgcatagaagtaagatgaaagcaaaaaaccatttacaaaatttaacatatcaattaaaccactatatac  12572500                                                      --------->ATHB51                                                      --------->ATHB12                                                     <---------MYB52(1)                                                     --------->ICU4                                                     <---------YAB1                                --                                               --------->ETT(2)                                    --                                               <---------ETT(2)                                    <-                                          <---------ANAC58                                         <-                                          <---------bZIP60(2)                                     ---                                          <---------ANAC58       -------->P                       --- --TEIL                                ----------->HVH21      <---------ANAC58             --------->YAB1 -----GT1      <-----------GT1    ------->TEIL---------->ARF1 <---------ANAC58  --------->MYB52(1)---   atgactataacatgttttcacatacctgttaagatgaacccatgacttgtcgaccattatttgtgcttacccataaaaaaaaaaacagacccataagaac  12572600            --------->ARR11(3)            <---------ARR11(3)            --------->AHL20(1)          --------->AHL20(1)          <---------AHL20(1)         --------->AHL20(2)       --------->AHL20(2) ------>MYB46(1) ------>MYB83                                                     --------->ANAC58 ------->AtMYB61                                                  --------->ANAC58 ------->MYB46(3)                                               --------->MYB46(3)                  - --------MYB111(1)                                            --------->ANAC58                   ---- --------MYB46(2)                                             --------->ANAC58       --------->TOE1(3) ------>ANAC46           <-----------GT1               ------>MYB83--------->MYB46(3)--------->TOE2(3) ------>ANAC58   --------->YAB1      ----------->RAV1(1)---------->DOF2           <---------CCA1(2)<- ------>ANAC58  <-------TEIL    <---------At5g28300    ------>MYB46(1)       --------->WOX13(1)<-----   accaaacaaaaatatatattcatattttcacattcacagcaacagttcattaaaaccaaatagcaaacaaccaattcatcagtcaaatcttaaacaaatc  12572700                                                                                     --------->ANAC55(2)                                                                                     <---------ANAC55(2)                                                                                ----------->HVH21                                                                             <---------DEAR3(1)                                                                           --------->LBD16                                                                          <---------RAP2.6(2)                                                                         ------>ZmHOX2a(2)                                                                        <------ZmHOX2a(2)                                                                        --------->CCA1(2)                                                                       <---------ARR14(2)                                                                       --------->ARR14(2)                                                                       --------->ARR11(1)                                                                       <---------ARR11(3)                                                                       --------->ARR14(3)                                                                       <---------ARR14(3)            <---------YAB1                                             --------->ARR11(3)         ------->TEIL                                                 <---------GLK1(1)   <---------ARR14(2)                            ------->GAMYB        <---------HSFB2a(1)   --------->ARR14(2)                         ----------->RAV1(1)    ----------->ARR10 -------->AHL20(2)                      --------->At4g35610        <---------At4g35610 ----->WOX13(1)                         <---------At4g35610 <-------TEIL--------->ARR14(1) --------ATHB12                    --------->ZAT14         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ----ATHB12 <---------AHL20(2)     <---------ZAT14    <---------At4g35610<---------LBD16  <---------YAB1   aatcaaatacgaatttcattgtgagaactagcctctgtgttctgatgccaacaggcagaagatgcaggcagaagatccggctgtgatatgtgatcaatgt  12572800                                                                                                    <                                                                                                  <xx                                                                                           <------MYB83                                                                                           <------MYB46(1)                                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           --------->ALFIN1<---------ANAC58                                                                         --------->At4g35610    <----              --------->AHL20(2)                                         <---------At4g35610    -----      --------->WRKY18(1)                                              <-----------RAV1(2) <---------ANAC58     --------->At5g28300                       --------->TOE2(3)     <-----------HVH21    --------->MYB59     <-----------HVH21              <---------ARR11(3)              <----------DOF2     <---------MYB52(1)    ----------->GT1   ----------->GT1        <-------TEIL       <-----------GT1     <------ZmHOX2a(2)   ttaaaacggtcaaaaatcaaatacttgtaaatactcaagaactcaaatacattaactggatgttttatacctttcaggtgtatgagatcagttgggttcg  12572900            <-------GAMYB           --------->MYB111(1)                       <---------DEAR3(1)           <---------MYB46(3)             <------NtERF2          <--------P                    --------->ALFIN1         <-------GAMYB                  <---------ANAC46       <---------TOE1(3)                <---------DEAR3(1)       <---------TOE2(3)               --------->ATERF1(1) <---------ARR11(3)                    <------NtERF2 <---------AtMYB61                    <------NtERF2 --------->ARR11(3)                   <---------ATERF1(1)                               <---------ANAC46 ---------RVE1(1)                    <---------DEAR3(1)                                 <---------DEAR3(1) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ATERF1(1) --------->ALFIN1               <---------LBD16 -----HSFB2a(2)                 --------->CCA1(2)    --------->ALFIN1            xxxxxxxxxxxxxxxx>smallRNA(i) ---->HSFB2a(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->ALFIN1--------->ALFIN1   agagattttagggttgttacagagacagagagagagacggaggcggagggagacggaggtggagagagacagaggtggagagagacagaggcggagggag  12573000  Previous    Next  AGI:  At3g30837.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 1.8e-261 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element) Range:  from: 12569653    to: 12572476    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version