Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <<<<<                                                                   --------->ARR14(2)        --------                                                                   <---------ARR14(2)    <---------ANAC46                                    --------->ANAC58              <------ZmHOX2a(1)      <---------ANAC58                            --------->ANAC58                    <---------TOE1(2)        <---------ANAC58                          <---------ALFIN1                     --------->LBD16------>MYB46(1)<-------         --------->HSFB2a(2)--------->ANAC58                  <---------TOE2(1) --------->ARR11(3)         <---------HSFB2a(2)--------->ANAC46              --------->YAB1      ------>MYB83   -------- --------->YAB1  <---------YAB1     --------->ANAC58     <---------ATHB12  --------->MYB46(3)<------- -DOF2  <---------LBD16   --------->ZAT6     <-----------GT1  <---------TOE1(1) <---------ARR11(3)   cagtgatacttctggatttatgatacaaacactccaccaaggaattgtttctcttcttaatcatccgaggatttagaaccaacatcttcttgcttctaga  12506400                                                            <------NtERF2                                                           <---------MYB46(3)                                                        <------MYB83                                         ---------->DOF2--------->MYB52(2)                         --                                       --------->ANAC46 <------MYB46(1)                <---------ANAC58                                  <----------DOF2       <---------MYB46(3)             <---------ANAC58                                 <---------ANAC58      --------->MYB55(2)           --------->ARR14(2)   <----------DOF2               <---------ANAC58      <---------MYB46(3)           <---------ARR14(2) <<ZML2   ---------->DOF2     <---------WOX13(1)      <--------P                    --------->GLK1(2) ->HSFB2a(2)               --------->LBD16          ------>ZmHOX2a(1)              --------->GLK1(1)< --HSFB2a(2)               <---------RAP2.6(3)      <-----------RAV1(1)            <---------GLK1(1)- ->HSFC1(1)               <---------ANAC46   <---------GLK1(2)                 --------->DAG2    <--- --HSFC1(1)              <---------LBD16--------->LBD16<---------AtMYB61     ---------->DOF2   ------   actctctttgattaaagccatctccatgccggattgcttctccgaaagaatttcctgttggtggctcagttctatcaccaaaagggaatccttgctctgc  12506500                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    <                                 --------->YAB1                                                     -                             <---------MYB46(2)                         <----------DOF2       -------                             <---------MYB59             --------->At4g35610                  ------- ------->O2--------->HSFB2a(2) ------>MYB46(1)           <---------At4g35610       <---------ANAC58 < -------MYC3            --------->At4g35610              --------->ZAT2 <---------DAG2        ------- ------>MYC3            <-------GAMYB     ------>ZmHOX2a(1)      --------->WRKY38(1)         ------->TEIL ------ALFIN1           <---------At4g35610      --------->YAB1  --------->WRKY12  <---------ANAC58<- >NtERF2   <---------HSFB2a(2) ------>MYB83 <----------DOF2 ------>NtERF2          <---------GLK1(2)-   cacgtttttggttttggaagtgagtcagttaccaaacacaattcctctttatcagcattagctgccattgactcctttatccatagcttctcttgtaccc  12506600        <-----------RAV1(1) ---------ARR11(3) -------->AHL20(1) -------->ARR14(2) ---------AHL20(1) ---------ARR14(2) -------->ARR11(3) -->ANAC46   <---------ANAC46 -->ANAC58   <---------ANAC58                                  ------>ZmHOX2a(1)        ----------->HVH21 ---------ARR14(3)                                       <---------At4g35610          ----------->GT1 -->ANAC58   <---------ANAC58                            --------->At4g35610       <-----------RAV1(1) --------CCA1(2)                          <---------LBD16--------->ZAT2        <----------DOF2 -------->ARR14(3)                    <---------DAG2     <---------ZAT2    <----------DOF2     <-----   aatatcttgtatgtggcatgtttttgaacttgaacatccaatttttcggagaaaaactcagcttcctcttcttcagtctttctttctgtggtgacattat  12506700                                   <-------MYC2                                   <-------MYC3                             ----------->HVH21                           --------->MYB52(2)                            --------->ANAC55(1)                         <--------P------->MYC2                          --------->ANAC46                       <---------MYB46(3)                <---------ARR14(2)             <-----------GT1                     <---------ANAC58                    --------->ARR14(2)  <---------AHL20(1) -----  <---------ZAT18    <---------ANAC58      <----------DOF2               --------->ANAC55(2)    <---- ----AHL20(2)   <----------DOF2    ------->MYC3     ----------->RAV1(1)  <---------ANAC55(2)   <-----   atcgagcacttggtatgtcttttgctggttagtgacacatgctgactttggagacaacatatacacttcttaaacacataatatttgtaatttctcttct  12506800                                                                                     ----------------                                                                                     <---------------                                                     <---------MYB46(3)          <---------DEAR3(2)                                                   <---------At4g35610           <------MYB46(1)                                                   --------->At4g35610           <---------MYB46(3)         ---------->DOF2                      *TSS <---------ZAT2                --------->MYB52(2)        <---------ATHB12       <---------ANAC46    --------->ZAT2                <------MYB83    ------------>CBF     --------->AGP1   ------>ZmHOX2a(1)                  <---------MYB46(3)   ------->TEIL     ------->GAMYB       <---------ICU4        <---------ANAC58  --------->MYB111(1) ---->HSFB2a(2)    --------->ANAC46   <---------ARR14(2)      <---------ANAC58  <---------AtMYB61 -----HSFB2a(2)    --------->ANAC58  <---------GLK1(1)        <---------ANAC46 <--------P ----LBD16         --------->ANAC58  --------->GLK1(1)----------->GT1        --------->ATHB12   ggatgaatcaataaagcatcaacgccagaactagagtggaaatccttacaaacagctggtgattccttgttaaatcgaatggttggttccaattttgaaa  12506900                          =================RAV                          <---------At4g35610                          ----------->RAV1(2)                                           ------->GAMYB                         --------->ARR14(2)                                     <---------ARR11(3)           <---------At4g35610 ----------->RAV1(1)                          ---------->DOF2           --------->At4g35610----------->HVH21                           ------>ZmHOX2a(1) --------- ->AGL1   <---------ANAC46--------->At4g35610                  --------->ALFIN1 --------->ARR11(3) --AGL3--------->ALFIN1  <---------ARR14(2)         <---------CCA1(2)------>ZmHOX2a(1) --------->ANAC46   ctggtacctgtggagttgacaaaatcgcatctgcgacagcgttgctatccacttctatcttcgatgtgttcctctcctcaaagatttcaacgacattatc  12507000                                                                                                  <--                                                                                             ------->MYC3                                                                                             <-------MYC2                                                                                             ------->MYC2                                                                                             <-------MYC3                                                                                            =========                                                                                            =========                                                       --------->LBD16 <---------TOE2(3)    <--------                                                     <---------ANAC46 >>>>>>>>>WRKY18       ---------                                                   <---------ARR14(2)--------->WRKY12       <--------                    <-------GAMYB         --------->YAB1  <---------TGA1a                   =========                    ================================================MYC_MYB                 <--------       --------->At4g35610                ==========================MYC_MYB                 --------- <------ZmHOX2a(1) <-----------RAV1(1)    --------->TOE2(3) --------->ALFIN1                --------- >ICU4 <---------At4g35610                ------->GAMYB------>ZmHOX2a(1)                    ---------   ggaggagtcttctgcaattttctgttgaatagggtttttctcaaccgtaatcgtttcctgaagtgtgtccattgacgaaatgatacagtattacacgtga  12507100       <-------MYC2                                ------->MYC2       ------->MYC2                                <-------MYC2       <-------PIF5                                ------->MYC3       ------->MYC4                                <-------MYC3 --------->ARR11(1)       <-------PIF4                               --------->O2  --------->ARR14(2)       ------->MYC3                               --------->ANAC55(2)       --------->TOE1(2)                          <---------O2  <---------GLK1(2)       ------->PIF5                               --------->TGA1a       <-------MYC4                               --------->ANAC58      <---------TGA1a                             --------->bZIP60(2)      =====================bZIP_DOF               --------->ANAC58      =====================bZIP_DOF               <---------TGA1a--------->ARR14(1)      --------->TGA1a                             --------->ANAC46 -------ZAT6                                 ----------->HVH21  <---------ARR14(2)      --------->MYB52(2) ==========================bZIP_DOF         <---------WOX13(1) <------ZmHOX2a(1)      <---------MYB52(1) ===============bZIP_bZIP           --------->ARR14(2)         =================HOX2a_HOX2a -TGA1a------->PIF4   ----------->GT1 --------->TOE1(2)       ----------->ARR10    ---------->ID1 >TGA1a<-------MYC3  ----------->GT1--------->GLK1(2)    --------->ANAC58     --------->GLK1(2) -O2 ------------>OsbHLH66     ---------->DOF2    <---------ANAC55(2)        <---------GLK1(2) ==========================bZIP_DOF<---------GLK1(2)----------->HVH21   <---------ARR14(2) -ANAC55(2)         --------->ALFIN1<---------ARR14(2)   --------->ANAC58<------ZmHOX2a(2) >ANAC46        ============================================bZIP_DOF    --------->ARR14(2) >ANAC55(2)     ---------->DOF2=============================bZIP_DOF   <---------At4g35610 >O2<------------OsbHLH66     --------->AHL20(2)  --------->ANAC55(1)  --------->At4g35610   gagttagcacgtgcgaaacaaagtgggaaaaataaaagaatctgggattgacacgtgacaagcgaggattcgcagatcagaatttgtcgttagtcactat  12507200                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)              <-----------HVH21                                     <---------YAB1------>ZmHOX2a(1)              <-----------TGA1                            --------->HSFC1(1)  --------->ARR11(3)             --------->bZIP60(2)                          <---------HSFC1(1)  <---------ARR11(3)             --------->ANAC46                             <---------HSFB2a(2) --------->ARR14(2)         <-----------GT1                                  --------->HSFB2a(2) <---------GLK1(2)    <-    --------->ALFIN1             <---------KAN4(2)    --------->KAN4(2)       --------->AGP1      ---  <---------ANAC58     <----------DOF2               <---------KAN4(1)        <---------ARR14(2)  ---  <---------ANAC58 --------------------->WRI1--------->ICU4  <<<<<<<ZML2    ----------->ARR10  ------  <---------ANAC46 <----------DOF2 <-----------GT1   --------->KAN4(1) <---------WOX13(1)     <------   aagagcgtgtgtaactcgtcactttcttttcatcgaataaccctgtaatctttgaatattctagaaccttgtaattgctagatcctctcgccttgagagt  12507300  Previous    Next  AGI:  At3g30814.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 7.7e-109 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus) Range:  from: 12506846    to: 12510449    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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