Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                      ---------->DOF2                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <-                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              xxx                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxx                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <xxx                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxx                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <xxxxx                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)            <-----                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              ======                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <xxxxxx                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxx                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxx                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxx                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <xxxxxxxxx                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <xxxxxxxxxx                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxx                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          xxxxxxxxxxx                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxx                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          xxxxxxxxxxxx                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         xxxxxxxxxxxx                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxx                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxx                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <xxxxxxxxxxxx                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxx                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            xxxxxxxxxxxxx                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxx                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxx                                      =======================RAV                     xxxxxxxxxxxxxxxx                                      <-----------RAV1(1)    --------->DAG2          --------->ANAC58                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <xxxxxxxxxxxxxxx                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            xxxxxxxxxxxxxxxx                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxx                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <xxxxxxxxxxxxxxx                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxxxxx                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             xxxxxxxxxxxxxxxx                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                --------->ANAC58                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxx                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)               xxxxxxxxxxxxxxxxx                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           xxxxxxxxxxxxxxxxxxxxx                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)              <xxxxxxxxxxxxxxxxxxxx                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <xxxxxxxxxxxxxxxxxxxx                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxx                             ------->TEIL<---------MYB46(3) ---------->DOF2    <xxxxxxxxxxxxxxxxxxxxx                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxx                          --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxxxxxxxx                          --------->ANAC46xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ATHB12<xxxxxx                          --------->ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)                     <---------ICU4 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxx                  --------->YAB1 xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)            <xxxxxxxxxxxxxxxxxxxxxx                 <---------YAB1<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->YAB1 xxxxxxxx               xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<-----------RAV1(2)     <---------TOE1(2)<xxxxxxxxxx               --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     ===============================  <xxxxxxxxxxxxxxxxsmallRNA(i)<---------At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxx ->ZmHOX2a(2) <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ------>ZmHOX2a(2)xxxxxxxxxxxxxx ---ARR14(2)--------->YAB1--------->ANAC55(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxx -->ARR14(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ICU4 xxxxxxxx -----ARR10--------->ICU4 <---------ANAC55(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxx   gcctcactaagtatttatgataatacttacgcatctcattgtgttgttgatgcaggtaaagataaagtgtgatcgtagaatcatggcaaggaagagagga  12481500           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <------ZmHOX2a(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------HSFB2a(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 >>>>>>>>>ARR2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   >>>>>>>>>ARR2 ------>ZmHOX2a(2)                                      >>>>>>>>>ARR1 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    >>>>>>>>>ARR1 --------ARR11(3)                                      <------ZmHOX2a(1) ------->ARR11(3)                                   <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <--------P  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(i)                          xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <---------MYB52(1) xxxxxxxxxxxxxxxxxxsmallRNA(le3)                   xxxxxxxxxxxxxxxx>smallRNA(i) -ZmHOX2a(1)<---------MYB52(1)                   --------->LBD16<---------MYB52(1) =======HOX2a_HOX2a                             xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------LBD16 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxsmallRNA(le3)                    xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxsmallRNA(i2)                    <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxsmallRNA(le3)                  xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxsmallRNA(s)                            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(le3)                    <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxsmallRNA(fl3)                    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxsmallRNA(le3)                    <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxx>smallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(i) xxxxsmallRNA(s)                           xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxsmallRNA(le3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxx>smallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xsmallRNA(s)                           xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxx>smallRNA(i) xsmallRNA(i)                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxsmallRNA(le3)                --------->ATHB12<---------YAB1 xxxxxxxxsmallRNA(si3)                xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxx>smallRNA(s)                           <------- xxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <---------AHL20(2) xxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->AHL20(2) xx>smallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           xxxxxxxxxxxxxxxxx xsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-------GAMYB        xxxxxxxxxxxxxxxxx xxxsmallRNA(se3)            xxxxxxxxxxxxxxxx>smallRNA(i)  <-----------HVH21       xxxxxxxxxxxxxxxxxx xxxsmallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxsmallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------YAB1<---------MYB46(3) x>smallRNA(i2)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) x>smallRNA(se3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xsmallRNA(s2)--------->MYB52(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <------MYB83-------- xxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ATHB51 xsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-------- xxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxsmallRNA(i)<---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <------MYB46(1) =HOX2a_HOX2a<---------TOE1(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <---------AtMYB61 xxxxxxxx>smallRNA(si3)    ---------->ID1xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxx>smallRNA(se3)<---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <-----------RAV1(1) xxxxxxxxxxxxxxx>smallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---   tgatctaggaactcgtttgttttatttttggtgtttttggttattggaacccggttaggattgtcagttattcttggttttgttggtcgaattatttatt  12481600                                   <---------YAB1    <---------AHL20(2)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 <---------ICU4      --------->AHL20(2)                                 -------->HAHB4   <<<<<<<<<<MYB80                                 --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 --------->ATHB51<------MYB83<---------CCA1(1)                                 <--------HAHB4  <------MYB46(1)                                 -------->ATHB1  <---------MYB46(3)                                 <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                --------->ICU4   ----------->GT1                                <---------ATHB51<---------AtMYB61                                <---------YAB1<---------ANAC58                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  <---------AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ANAC58               --------->AHL20(2)    --------->AHL20(2)       --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->AHL20(1)  --------------->AGL15      <---------AHL20(2)<--------P   <---------ARR11(3)      <---------AHL20(1) --------->YAB1             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <---------AHL20(2) --AHL20(2)             <---------ANAC46     --------->MYB55(2)          --------->ICU4 xxxxx>smallRNA(si3)   <---------LBD16       <---------MYB46(3)         <---------KAN4(2)--------->AHL20(2) xxxxx>smallRNA(se3)<---------ANAC58    <---------AHL20(2)  --------->ARR11(3)   --------->YAB1 xxxxx>smallRNA(i2) <---------ANAC58  <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------AHL20(2) ->AHL20(2)  <---------YAB1<----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(2) -AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->AHL20(2)   ---- ------AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(i) --------->ATHB12<---------RVE1(1)   --------->AHL20(2)   tattcataaaatagtatttttgacttgcggtttaattattatgttattggttggtttaattagatatttatgggaatatttaattatatatttaaaaaaa  12481700                                      <---------TOE2(3)                                   <---------ARR14(2)                                   --------->ARR14(2)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                  xxxxxxxxxxxxxxxx>smallRNA(i)                          xxxxxxxxxxxxxxxx>smallRNA(s)        --------->AHL20(1)                        xxxxxxxxxxxxxxxx>smallRNA(s)--------->REM1(2)                      <------MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                   <XXXXXXXXXXXXXXXXXXXXXMIR845B    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           <---------MYB46(3)   xxxxxxxxxxxxxxxx>smallRNA(s)  <---------AHL20(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                 <--          <--------P xxxxxxxxxxxxxxxx>smallRNA(i)  --------->ALFIN1                     <---------WOX13(1)         <---------MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(i)       --------->AHL20(2)      --------->ATHB12      <---------ANAC46<------MYB46(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             <---------YAB1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <------ZmHOX2a(1)              <-----------GT1     <--      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->HSFB2a(2)           <---------AHL20(2)      <--      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------HSFB2a(2)  <---------WOX13(1)  --------->ICU4 x     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  >>>>>>>ZML2      --------->AHL20(2)   ------>ZmHOX2a(1) <    <-----------HVH21--------->MYB59xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->AHL20(2)      <xx ----->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----------->GT1     --------->ATHB51  <--------   aaaatgggtcgggttgtttcaatttggtatcagagcgattacggttctaggatgtgtagaaaaattaattgatgaattattttcctgatgattgattatg  12481800                                                                            <---------ANAC58                                                                  --------->ANAC58                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                             <---------MYB59                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   <---------MYB46(3)                             --------->ANAC58                   <-----------RAV1(1)                            --------->ANAC46                 <-------GAMYB                                   <---------LBD16             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                 --------->LBD16    <---------ARR11(3)             xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  <xxxxxxxxxxxxxxxxsmallRNA(i)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)              --------->GLK1(2)      <---------AHL20(1) -------ANAC46  <-----------RAV1(1)                       <xxxxxxxxxxxxxxxxsmallRNA(i) -------ANAC58<---------ANAC58                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------ANAC58<---------ANAC46         xxxxxxxxxxxxxxxxx>smallRNA(se3) --------->MYB52(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------ANAC46 -------- ---------ZAT6<---------ANAC58------>ZmHOX2a(1)   --------->TOE2(3)  <--------P     --------->ARR11(3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->YAB1   --------->TOE1(3) --------->At5g28300    <---------MYB52(1) -YAB1   xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ANAC58<--------   gagtgtttagtcaattgtgtgttgttggagtcctaacatcatcttctccgagccttaaatgagattccacggtaagttgtttgtgatatattcgtttgtt  12481900                                                                          <----------ID1                                                                          ----------->HVH21                                            <---------ZAT2                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                            <---------At4g35610         <------MYB83                                            --------->ZAT2              <------MYB46(1)                                            --------->At4g35610         <xxxxxxxxxxxxxxxxsmallRNA(i)                                    *TSS  <------ZmHOX2a(1)        <------NtERF2                                   <-------GAMYB           <---------ANAC58                                  <---------MYB46(3)       <---------ANAC58  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               <---------At4g35610       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ALFIN1                             <-----------RAV1(2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           ------                            <---------ZAT18<---------ARR14(2)     <------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s)                           <---------ANAC46--------->ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(i)    <-------                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------LBD16            ========                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxx>smallRNA(s)       <-------TEIL                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ANAC58 <--------P    ------>ZmHOX2a(1) ->MYB52(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC58<---------SPL7 <---------HSFB2a(2) -TOE1(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ZAT18   ttagtttcttagccatttgttcttgagtagcgcagatggttagaggagctggagttcgtggtcgtggtcgcggtaggggacgagtcctcgagggtacagg  12482000                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             ------>NtERF2              <------ZmHOX2a(1)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            --------->DEAR3(1)        --------->MYB59                                          <---------At4g35610         xxxxxxxxxxxxxxxx>smallRNA(i)                                          --------->At4g35610      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      <---------PCF2               <-------GAMYB                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------NtERF2                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->LBD16                           <---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------LBD16                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->LBD16                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------LBD16                       <                    <-----------RAV1(2) <-------TEIL         --------->ATERF1(1)            ---------          ======================RAV--------->ALFIN1        --------->TCP20 <---------HSFB2a(1)  =====          ----------->RAV1(1)    --------->ALFIN1          <---------PCF2  --------->HSFB2a(1)  <---- xxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<--------P             ---------- --->ANAC46       <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <------NtERF2 - ----RAV1(2)      ----------->RAV1(1)<---------DEAR3(2)    --------->TCP16(1)        ------>NtERF2  < =====================RAV  --------->At4g35610----------->RAV1(2)  xxxxxxxxxxxxxxxx>smallRNA(i) -----   cgagagtgatggccacagtgccacagttgagcagagtgtgggttcgcagcctgagtttgtggagcccggggttaggaacggtcttggtgccgataaagct  12482100                  <------MYB83                  <------MYB46(1)                 --------->ALFIN1                 --------->MYB55(2)                 <---------AtMYB61                                                      <---------LBD16                 <---------MYB46(3)                                                     --------->ATERF1(1)              ------>NtERF2                                                             <xxxxxxxxxxxx             <---------RAP2.3(3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <---------PCF2                                     <---------PCF2         --------->ZAT2           <---------MYB46(3)                                   --------->ZAT18        ------>NtERF2          --------->ALFIN1                                      <---------PCF5         --------->At4g35610          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxx>smallRNA(i)        --------->ALFIN1                                  <----------CDC5            --------->ATERF1(1)       xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(i)<-----------RAV1(2)    --------->ATERF1(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <-----------HVH21  <    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->At4g35610  <---------ANAC58<------ZmHOX2a(1)    <---------LBD16                 --------->ARR14(2)   <---------At4g35610 <---------MYB46(3)     <   <---------At4g35610  <---------At4g35610           <------MYB46(1)xxxxxxxxxxxxxxxx>smallRNA(i)   x   --------->At4g35610  <---------ZAT2                <------MYB83   xxxxxxxxxxxxxxxx>smallRNA(s)   x   ------>NtERF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------TOE1(2)      <---------ANAC46 <------- <-----------RAV1(2)    --------->At4g35610          <---------DEAR3(1)   --------->ATHB12 <------NtERF2 --------->ATERF1(1)    --------->ZAT2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ALFIN1    x ---------At4g35610  <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------AtMYB61   ----------->HVH21 xxxxxxxxxx >DAG2 <------NtERF2--------->ALFIN1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ALFIN1 --------->LBD16 ============RAV<---------ANAC46 <---------DEAR3(2) <---------MYB52(1)<------ZmHOX2a(1)<---------ZAT2 -------RAV1(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-------GAMYB--------->PCF2<---------ANAC58------- >DOF2--------->LBD16<xxxxxxxxxxxxxxxxsmallRNA(s) <---------ANAC58 <---------LBD16<------NtERF2  xxxx -------->ZAT14<---------ZAT2  <------NtERF2 <---------AtLEC2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <- ---------ZAT18xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC58 <-----------RAV1(2)--------->DEAR3(1) ---->ALFIN1 <---------RAP2.6(2)--------->ETT(1)  <---------ANAC46xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ggtgcagccggagtgggggctggtggagctggtgtcggtatcggtgtgcatgtcgttggtgctgagggcccaggagtgatgggtgtcgcagccggaggag  12482200                                                              <---------SPL7                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <---------AtMYB61                            ----------->RAV1(2)             --------->ALFIN1                    <----                     <---------ANAC46                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------MYB46(3)                          --------->ALFIN1                      <----              <------MYB46(1)                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <----              <------MYB83  <---------ZAT2              --------->ZAT2                         <-----           xxxxxxxxxxxxxxxx>smallRNA(i)               --------------->AGL15                  xxxxxxxx          <---------MYB46(3)<---------At4g35610       <-----------RAV1(2)<---------ATERF1(1) --------          xxxxxxxxxxxxxxxx>smallRNA(i)               <-----------------AGL1              --------->TGA1a       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         ----------------->AGL1 <<<<<<<<<<<<<<<<<LFY<----       --------->LBD16 <------NtERF2                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx      <---------HSFB2a(2)   --------->ZAT2           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)============      --------->HSFB2a(2)   --------->At4g35610     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------O2   --------->ARR14(2)<---------ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->O2   <---------ARR14(2)<---------ANAC58             <---------ARR14(2)  --------->ZAT14    <---------TGA1a <xxxxxxxxxxxxxxxxsmallRNA(s)                    <xxxxxxxxxxxxxxxxsmallRNA(i)            ============ --------->ZAT2     <<<<<<<<<E2Fd               <---------MYB46(3)    <---------ZAT14    ============ <xxxxxxxxxxxxxxxxsmallRNA(i)<----------CDC5   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ------>NtERF2 <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <------NtERF2 xxxxxxxxxxxsmallRNA(si3)<---------ANAC58      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ATERF1(1) ---------TOE2(2)   <---------LBD16            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------bZIP60(1) ---------TOE1(2)   <<<<<<<<<E2Fc             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------PCF2 <- xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->PCF2 -- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --ATERF1(1)<--------P ------>NtERF2          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->bZIP60(1) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ATERF1(1) xxxxxxxxxx>smallRNA(si3)<---------ANAC58     <---------At4g35610     <---------ZAT18<---------RAP2.3(1) -->ATERF1(1)<---------AtMYB61                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->RAP2.3(1) xxxxxxxxxxxxxxxxx>smallRNA(se3)             ------------>MYB.PH3(1) --------->ALFIN1------>NtERF2 <- ----------RAV1(2) xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ALFIN1 <--   cccaggttccagaggttggtttggcgggcctgctgaggcagtttttggagcggttaccaggtgtggtaccagtgcaggctccagtggcgccacgagtggc  12482300                              <---------HSFC1(2)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <---------HSFB2a(1)                              --------->HSFB2a(1)                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------ANAC46                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      <---------At4g35610                      --------->At4g35610        xxxxxxxxxxxxxxxx>smallRNA(i)      <---------At4g35610xxxxxxxxxxxxxxxx>smallRNA(i)      --------->At4g35610<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------ZAT2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      --------->ZAT2 <---------MYB46(3)     ----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <-------TEIL     <--------P--------->HSFC1(2)            --------->At4g35610--------->LBD16   <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <---------ANAC46  --------->ALFIN1 <-------GAMYB                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ARR14(2)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -----ANAC58      <---------MYB46(3)                     <---------At4g35610 <------NtERF2 -----DEAR3(1)   <xxxxxxxxxxxxxxxxsmallRNA(i)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----ANAC46     xxxxxxxxxxxxxxxx>smallRNA(i)      --------->ATHB12          --------->ATERF1(1) ----LBD16      <------NtERF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->ARR14(2) xxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ->ALFIN1     <---------DEAR3(1)--------->ARR14(2)<---------YAB1      <---------ARR14(2)          xxx -----ANAC58 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxx xxxxxxxxxxx>smallRNA(le3)  <------ZmHOX2a(1)   <------ZmHOX2a(1)    <------ZmHOX2a(1)           xxxx ===========================MYC_MYB            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxx ==========================MYC_MYB            <---------TOE2(3)   <---------At4g35610      <xxxxxxxxx ============================MYC_MYB         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)xxxxxxxxxxxxxxxxxxxx --------AtMYB61<---------At4g35610        xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<---------LBD16   xxxxxx ------->ALFIN1------------>AtMYB77       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx --------DEAR3(1)<---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxx ----NtERF2xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)------>NtERF2 <----------   ggaggtgcagcagagggctgcggttgctgaggaggttccatcttatttgaggatgatggagcagttgcagaggattggcaccgggtatttttctggtggt  12482400  Previous    Next  AGI:  At3g30802.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.3e-311 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) Range:  from: 12481936    to: 12486781    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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