Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <----------DOF2                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                       --------------->AGL15                      --------->ANAC58                 <---------------AGL15                      --------->ANAC58                ----------------->AG               ---------->DOF2                        <-----------------AGL3            --------->YAB1                            ----------------->AGL1           <---------YAB1                             <-----------------AGL2     <---------ICU4         --------->YAB1                      --------->YAB1        <-----------GT1   --------->YAB1<----------ID1    ---------->DOF2    ----------------->AGL2    ------>ZmHOX2a(1)   tacaatgacattgataataaagccaagacaaaaacagcaaagtttgatcatcaattgccatttctggttttccctttcgctcctcattacttcttccttc  12424200                                                                                                  ---             ----------->RAV1(2)                                                               ------          ------>MYB83                                                                         <-----          ------>MYB46(1)                                                                   ------->GAMYB        --------->AtMYB61                            <---------ANAC46                      <<<<<<<<<TAC1        <---------ALFIN1                 ------->GAMYB                                   --------->MYB52(1)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->LBD16                    <-----------------AGL1     <-----------GT1                   --------->MYB52(1)<---------CCA1(2) --------->ZAT18<---------At4g35610  <----------DOF2   --------->ICU4     -------->P   <------NtERF2          <---------ZAT18--------->At4g35610   agttctttcaccatcccctgtaatgcttctagctcgactgcaaccggacttggcagcgtttatctcactgtccatggtggacaattttggccaactgtct  12424300          <---------TOE2(2)          --------------->AtSPL8          <---------TOE1(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------ANAC46                                                             --------->AHL20(2)     --------------------->WRI1                                                     ---------->DOF2  <---------ALFIN1                                                         ------->GAMYB --------->MYB46(3)                                        <---------MYB52(2)      <---------ATHB12 ------>REM1(1)                              ------>ZmHOX2a(1)-------->P  --------->ANAC58          - --->ETT(2)   ------->TEIL     --------->AHL20(2)       <---------ATHB12  --------->ANAC46         <- ----ETT(2)  <-----------GT1   <---------AHL20(2)     --------->WOX13(1)  --------->ANAC58       ----   acaaccacttcgtatgtaccatcttcgacccatttaaacaaatggtcctgcattttcaatcactaaccagttaacaacgaaaccaataaaacccaaaatc  12424400                                                            <---------TGA1a                                                            --------->bZIP60(1)                                                            <---------bZIP60(2)                                                            <---------ANAC46                                                            <---------O2                                                            <---------bZIP60(1)                                                            --------->TGA1a                                                          <---------TGA2(2)                                                         ----------->HVH21                    -------                                                         ----------->TGA1       --------->TGA1a     <                                                       <---------At4g35610      --------->O2<--------                                                       --------->At4g35610      <---------O2---------            <----------DOF2                         ==================bZIP_DOF  =====================           <---------ICU4    ------->GAMYB          ======================================bZIP_DOF  =        --------->REM1(1)    =========================================MYC_MYB   =====================  <---------YAB1          --------->MYB52(1)        <----------DOF2           <---------ALFIN1<------ -------->YAB1        ----------->HVH21            --------->MYB52(2)     ----------->HVH21--------->ICU4 --------ATHB51      --------->SPL7          --------->LBD16========================================= ----->WOX13(1) <---------ANAC46            <---------LBD16 --------->O2 xxxxxxxxxxxxxxxx>smallRNA(s)   aattatacttacatctttacgcgtatgacaacggaagtatggtcttccagggttctttgctgacgtcgatgtatagatgaccacgtctaatccatgatga  12424500                ------->PIF5                <-------PIF5               <---------TGA1a               --------->bZIP60(2)               --------->TGA1a              --------->ANAC46               <---------O2            --------->ZAT18               --------->O2            <---------ZAT18               --------->ANAC58       <---------ANAC58            =============MYC_MYB      <---------ANAC55(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC58 -->bZIP60(1)  --------->ANAC46       <---------ANAC46 ----------DOF2--------->ANAC58<---------ANAC55(2) -ICU4      ------->GAMYB      --------->ANAC55(2)                                               <--- >YAB1      --------->TOE2(2) <---------LBD16                                                    ---- ==========bZIP_DOF   --------->MYB52(1)   <---------HSFB2a(2)               <----------DOF2   <----- ========================bZIP_DOF    --------------->AtSPL8              <---------CCA1(2)     ------ ===================MYC_MYB <---------SPL7 --------->HSFB2a(2)         <---------ICU4   <---------ANAC58 ---bZIP60(1)<---------ALFIN1--------->MYB52(1)              <---------GLK1(2)          <---------ANAC46 ==========bZIP_DOF   <---------ALFIN1--------->ANAC55(2)    <---------ICU4  *TSS       <---------ANAC58   cactttgatggtaacccacgtccccaacggcttacggattgcgtactcgaaatcgagttctcagaattgctactcatttctttagctatagcttgggagt  12424600                                  ------>ZmHOX2a(2)                                 --------->CCA1(2)                                 <------ZmHOX2a(2)                                                <--                                --------->ARR14(2)                                               ----                                --------->AGP1                                                   <---                                <---------ARR11(3)                                              <----                                <---------AGP1                                                 ------       >>>>>>>>>>GT-3b          <---------ARR14(2)                                             <-----    ----------->GT1             --------->ARR11(3)                                             ------ ------ZAT14             <---------At4g35610                    <---------TOE2(3)              <----- ----->ZAT14             --------->At4g35610                    <---------TOE1(2)              <----- ----GLK1(1)            ------->TEIL          <------------CBF  <---------TOE2(2)         --------->ALFIN1 --->GLK1(1)   ---------->DOF2 <---------CCA1(2)       <-----------GT1<---------YAB1  <---------YAB1   tcagagaagaaaaataagaaagaatgaagctccagatctgaaaccagaaattggatttttctaacttaggttttgattttggagatttataagtggggat  12424700                                                                --------->ARR14(2)                                                                <---------ARR14(2)                                                                <---------ARR11(1)                                                                ------->TEIL                                                                <-----------ARR10                                                           <-----------HVH21                                                          --------->O2                                                          --------->bZIP60(1)                                                          =======================================bZIP_DOF                                                          <---------bZIP60(1)                         <-----------RAV1(1)              --------->TGA1a                  --------->bZIP60(1)                     <---------TGA1a                  <---------TGA2(1)                       <---------O2 <---------ANAC58 --------->TGA2(1)                      <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ANAC58 <---------O2                         ------->GAMYB----------->GT1 <---------ANAC46 --------->O2                         --------->DEAR3(1) --------DOF2     <---------ANAC58                     ----------->HVH21 -->ZmHOX2a(2)    <---------bZIP60(1)                  =============MYC_MYB ------HSFB2a(1)  <---------ANAC46                    --------->DEAR3(2) --ZmHOX2a(2)     <---------ANAC58                    <---------MYB55(2) --->ARR11(3)     <---------bZIP60(2)              --------->MYB46(3) --------->WRKY18(1) ----ARR14(2)    ----------->STF1             <----------DOF2  <---------ARR14(1)     =============== --->ARR14(2)   <---------TGA2(2)             ======================bZIP_DOF          <----------DOF2 ----ARR11(3)  ----------->TGA1            --------->GLK1(2)   <---------CCA1(2)   --------->GLK1(2) ----ARR14(3)<---------ICU4        --------->MYB52(1) --------->MYB46(3)   --------->MYB52(1)   ctttcgtttatgtcacaatgacgtcttatgtggtcactaatggagactctttcacaaccgacgtcgtatctggtcaataacagagactctttttctctgt  12424800                                                                                              <------MYB83                                                                                              -------                                                                                              <------MYB46(1)                          --------->YAB1                                                <xxxxxxxxxxxx                        --------->ANAC58                                               <-----------HVH21                        --------->ANAC58                                           --------->ANAC46                 ----------->HVH21                                              ------>ZmHOX2a(1)                 ----------->TGA1               --------->YAB1                 --------->TOE1(3)               =======================================MYC_MYB                  --------->TOE2(3) <xxx               <---------ANAC58              ----------->GT1               <----------DOF2   <-------               <---------ANAC58   --------->ANAC46              --------->TOE1(3)  --------->ANAC58               <---------TGA1a    --------->ANAC58       ------>NtERF2    <---------ANAC58  <--------               <---------O2  <-----------ARR10<-------GAMYB     --------->TOE2(3)  --------->ANAC58     <---------MYB59<---------ANAC46     ----------->HVH21   <---------ALFIN1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ========================bZIP_DOF --------->ANAC58 <-----------GT1        <---------ANAC58<xxxxxxxxxx   attttgacataactcagtcgtgacgcaggcataactaagcaatgtgactgttataactcggccaaaccctaaaattgctttccttaagccatcagttggt  12424900      --------->AHL20(2)    --------->ANAC58    ----------->GT1    <---------ANAC55(2)    --------->ANAC58    --------->ANAC55(2)                                                      <---------ETT(1) <---------ATHB12                                                      <---------DAG2 ---->GT1         --------->YAB1                                       <----------DOF2 xxxxxxxxxxxsmallRNA(i2)<-----------GT1                            <---------ZAT14      <----------DOF2 xxxxxxxxxxxxxxxxxxsmallRNA(i2)                  ------->TEIL      --------->ZAT14      <---------DAG2 --MYB46(3) <---------TOE2(3)                 <---------YAB1    <---------ANAC46--------->bZIP60(1) -MYB52(1) <-----------GT1                  --------->YAB1   --------->GLK1(2)  <---------bZIP60(1) xxxxxxxxxxxxxsmallRNA(se3)<----------DOF2  <---------ICU4  <---------GLK1(2)--------->ANAC46  ------   acaatcaagtaattaacatatcatattcactttccaactagtagaatcatgaaactagctcatattctgtatactttatccgacatcatactttatccaa  12425000                                    --------->YAB1                                 <---------WRKY38(1)                                 <---------WRKY45               <---------ICU4    <---------WRKY12         --------->MYB46(3)     --------->WRKY18(1)                      <---------AHL20(2)        <x       ------>MYB46(1)        <------MYB83                               --------->AHL20(2)       ---       ------>MYB83  <---------HSFB2a(2)                                <---------AHL20(1)       <---     --------->MYB46(3)       <------MYB46(1)                           <---------AHL20(2)      -----     <---------MYB59 <---------HSFC1(1)                                 --------->AHL20(2)      -----    --------->ANAC58 ------>ZmHOX2a(1)                                  --------->AHL20(1)      <----    --------->ANAC46 --------->HSFC1(1)                           --------->ANAC58              <----    --------->ANAC58 --------->HSFB2a(2)                          --------->ANAC58              <----  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------ZAT18              <---------YAB1 ----->RAV1(1)<---------YAB1 --------->MYB59            <---------MYB52(1)   <-----------GT1    -----   catcatacccaacaacatcattcctagaagtttggtcaacataatttgtcaatagacccttagtgcaaacccaatttattttctgttttgatattataga  12425100  Previous    Next  AGI:  At3g30755.1    Description:  transposable element gene. similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G30480.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1) Range:  from: 12424024    to: 12424577    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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