Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <------NtERF2    --------->At5g28300                                               <---------MYB52(1)   <---------MYB46(3)                                               ----------->GT1   ----------->GT1                                              ------>ZmHOX2a(1)  <---------DEAR3(1)                                      <------ZmHOX2a(1) <---------ABI4(1)                               <-----------------AGL1 <---------ORA47(1)                              ----------------->AGL1 --------->MYB52(2) --AtMYB61                         ----------->HVH21    <---------TOE2(3)  <-----------GT1 -DOF2          ------>NtERF2     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->TOE2(3)              <   ttgggcggtgaattttgcctccaattttgtttttgttgtgactcgtttgcgacctattaaggactccttctcgttaattactatgtaaacacttagtcga  12402100                        <---------HSFB2a(2)                        --------->HSFB2a(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->LBD16         <---------ANAC58         <---------ANAC58                                                                          --        <---------LBD16<---------LBD16                                                  ------>ZmHOX2a(1)  --------->YAB1    <----------DOF2                                                    --------->TOE2(3) -----------GT1  <-----------------AGL2                                        <---------GLK1(1)   ==   tttttcattatgcgggacttctctttctggattttgggtttcactctcaaaacctctcaactctcttctcttctcaaatcgatttctctcctcaatctct  12402200                                                           ---------->DOF2                                                         <------NtERF2                                                        ------>NtERF2                                                        ----------->RAV1(1)                                                       <----------ID1                          ========================HOX2a_HOX2a                                       -                     --------->HSFB2a(2)             ------->GAMYB                            -------             ------->TEIL ------>ZmHOX2a(2)       --------->MYB52(1)       --------->ANAC46 <--------            <---------GLK1(2)                    ----------->HVH21        <---------LBD16   <--------        --------->At4g35610                ------>ZmHOX2a(1)            <---------REM1(2)  <---------CCA1(2) ---->ZmHOX2a(1)     ------>ZmHOX2a(1)     --------->HSFB2a(2) ----------->GT1  --------->ATERF1(1)<- ================================HOX2a_HOX2a    xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------HVH21 ----   cctcagtctcttctgaatctctcctcgatctcttctcaatctctcctcgatctaacggcgacaaagggtaattctacacggggtcgcagtggcaaatctc  12402300                                                                                         --------->MYB52(1)                                                                                       <---------MYB55(2)                           <---------ARR14(2)                                          --------->MYB46(3)           --------->ARR11(3)                                               --------->At4g35610 <----           <-----------ARR10--------->CCA1(2)                           --------->ARR14(2)     <-----           <---------ARR11(3)                                           <---------ARR11(1)  ---------     <-------TEIL          --------->ARR14(2)                           <---------ARR14(2) <---------ATHB12 -------->YAB1           --------->LBD16                          --------->TOE1(2)    <---------ATHB12 -->TOE2(3)--------->ARR14(2)                                     <---------SPL7      ------>MYB46(1) ---ARR10  <---------ARR14(2)                                  --------->ARR14(2)     -------->P<---- -ARR14(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <---------ARR14(2)     --------->ANAC46 --------ATHB12        <---------LBD16                     --------->At5g28300        ------>MYB83<-- ----->WOX13(1)<---------ZAT14                            ----------->GT1   ------>ZmHOX2a(1) <------   aatcaggttcgagggtcttcactagtccggatacgaagccaagcgctagtaagtcttagagggtgaatcgtccgaatcctctgaatccaaccaatggtag  12402400                                                              --------->MYB55(2)                                                          <---------DEAR3(1)                                                         <---------At4g35610                         --------->ZAT2             <---------ARR11(1)                         <---------ZAT2             <---------ARR14(2)  ---------->DOF2       --------->ANAC58            --------->ARR14(2)     --------->ANAC46 --MYB46(1)             --------->ANAC58       ------>ZmHOX2a(1)          ------->GAMYB ----DEAR3(1)      ------->TEIL            --------->ARR14(2) <---------MYB46(3) >YAB1      ------>ZmHOX2a(2)              <---------ARR11(3)--------->ALFIN1 --MYB83  --------->ARR14(2)               <---------ARR14(2)<---------AtMYB61 <------------CBF -------ANAC46------>ZmHOX2a(1) <---------ANAC58   <---------CCA1(2)   <-----------GT1 --P      <---------ARR14(2)    <---------ANAC58  --------->LBD16    <---------WOX13(1)    --------->ALFIN1   gcgtaaaaggctgatcctttgaacccaagcagaggcttgagtcaaaatcctccgtatccagcggtggtttgattaaccctccattgaatccaagtgtgag  12402500                             --------->At4g35610                             <---------At4g35610                             <---------ZAT2                             --------->ZAT2                           <---------PCF2                      <---------ZAT2               <---------ANAC46                      --------->ZAT2               --------->ETT(1)                     <---------AtMYB61            <------NtERF2                     <---------DEAR3(1)         --------->ALFIN1                     --------->ALFIN1           <---------ANAC46                    <------NtERF2            <---------AtMYB61        ===============================                  <---------ANAC46           --------->ALFIN1--------->At4g35610                  <------NtERF2       <------ZmHOX2a(1)  <-----------ARR10     <---------ATHB12          --------->YAB1--------->ALFIN1  <------ZmHOX2a(1)  <---------At4g35610--------->YAB1        *TSS     <---------LBD16      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->WOX13(1)    --     <---------YAB1--------->LBD16 <------ZmHOX2a(1) <------NtERF2    ------>ZmHOX2a(1)   --------->GLK1(2)   tcggactatgaataatagtcgcggaggtgggagcagaggaggaaggagtggtgtcggagtgtcttctcactcctctagtcaatcagagacacaatctatg  12402600                                                                                            <--------                                                                                        ------->GAMYB                                                                                        --------->RAP2.6(2)                                                                                        --------->DEAR3(1)                                                                    <-----------HVH21  --------->MYB46(3)                                                                   --------->DEAR3(1) -------->P                                       --------->ZAT18          ------->GAMYB        --------->MYB55(1)                                      <------ZmHOX2a(1)         <---------ALFIN1     ------->GAMYB                                   ------>NtERF2                --------->AtMYB61   <---------MYB111(2)    --------->YAB1                <---------ANAC46             --------->MYB46(3)   <---------MYB55(2)   <---------ATHB12             ------>MYB46(1)                <---------MYB55(2)   --------->MYB46(3) --------->WOX13(1)             ------>MYB83               ------>ZmHOX2a(1)        <---------MYB52(2) =====HOX2a_HOX2a              --------->MYB55(1)     <---------At4g35610   <---------MYB52(1) ---->ZmHOX2a(2)             ----------->RAV1(2)     ------>ZmHOX2a(1)    ------>ZmHOX2a(1)<---------DAG2   atccaatcacatagaagtcttccatcccagtacctgccgaggacacaacctcttcctgctcctcaaccaccgtctcctgttattcaacaaccgccttttg  12402700                                                  ------->GAMYB                        <---------ARR14(2)                 <------ZmHOX2a(1)         --------->bZIP60(1)                         --------->ARR14(2)           ---------->DOF2                 <----------ID1  ------>MYB46(1)             --------->GLK1(2)     <---------ICU4 --------->At4g35610    <---------bZIP60(1)                    ----------->GT1 ------>ZmHOX2a(1)  <---------At4g35610    <---------ETT(2)------>MYB83          >>>>>>>>>TBF1 --DOF2<----------ID1 ----------->TGA1  ----------->TGA1  --------->WOX13(1)  >>>>>>>>>TBF1       ---   ctcctcaaaatgacaaagaggaagatgacgaagaaacagatgatgacgacaacgacataccaatccaagaagatgatgaagaagaagaaaatccagacca  12402800                                                     <---------DAG2                                                     <----------DOF2                                                  <---------AHL20(2)                                                  <-----------GT1                                            ----------->RAV1(1)                                            ------>NtERF2                                          <------NtERF2                                         ------>NtERF2                                         <------NtERF2                                        --------->DEAR3(1)                       <---------ANAC46                                        <---------ATERF1(2)                  <-----------RAV1(2)                                        --------->RAP2.3(3)             ------>ZmHOX2a(1)                         <---------ANAC58<---------ATERF1(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <---------ANAC58<---------RAP2.6(3)      --------->HSFB2a(1)                     <---------ANAC58   --------->RAP2.3(2)       <---------HSFB2a(1)                     <---------ANAC58   --------->RAP2.6(2)       <---------HSFC1(2)            <----           <---------MYB46(3)           --------->ATERF1(2)       --------->HSFC1(2)           ------ ------>ZAT6 <---------MYB52(1)        --------->RAP2.3(1)       <---------TOE1(2)           xxxxxxxx   agactaccaagagctgttagattgtttgcttaatcttcaaggccgccaacatttactttttctgtccaaggttcctatcccaggcgttgaaactctctgg  12402900                                                                                       >>>>>>>>>ARR1                                                                                       >>>>>>>>>ARR2                                                                      <---------WOX13(1)         <---                                                           <XXXXXXXXXXXXXXXXXXXMIR775 --------->ATHB12                                                         --------->ZAT18             <---------YAB1 -----MYB52(1)                                           <---------ZAT18          xxxxxxxxxxxxxxxxxxx ----->GT1                   <----------DOF2             <---------ZAT14 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(le3)        ------>ZmHOX2a(1)  --------->ZAT14--------->ATHB12   <---------YAB1   taatttcgctctctctcattctctcgctctccttttcttcctattgttgatgtgtttagagcactgctagagattgatttgtgatttatgattgtgattg  12403000  Previous    Next  AGI:  At3g30746.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-53 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 12402508    to: 12404796    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version