Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <---------YAB1                                                  <---------ANAC58                      <---------ARR14(2)          <---------ANAC46                      --------->ARR14(2)          <---------ANAC58                     <------ZmHOX2a(1)           <---------MYB46(3)                 --------->LBD16             <---------AHL20(2)                --------->HSFB2a(2)          --------->ATHB12                                --------                <---------HSFB2a(2)         <---------AHL20(2)     ---------->DOF2           --------               <---------HSFB2a(2)          --------->AHL20(2)  <---------YAB1               <-------               <---------LBD16           --------->ATHB12    <---------YAB1         ----------->HVH21             --------->PCF5     <---------HSFB2a(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------ZmHOX2a(1)            <-----------HVH21   --------->HSFB2a(2)<---------------------WRI1     --------->LBD16   <----------DOF2   <---------HSFB2a(1)<---------YAB1 --------->ICU4           <---------LBD16------   tatctctttgaagaggtcccggaggattcgactacgagaacgatgatttattgggtgatgagtattatgaaaaggaatcaattccggtgatggaggatcg  12389900                                                                                                -----                                                                                            ---------                    <---------ANAC58                                           --------->DAG2   -----          <---------MYB52(1)                                                  ---------->DOF2<-------         <---------RAP2.6(3)                                             ----------->GT1    --------- ->ARR14(2)         <---------ANAC58                                  --------->ALFIN1      --------- ->ARR11(3)    <---------MYB46(3)                                    <---------ZAT14      <---------ALFIN1 --ARR14(2)    --------->MYB111(1)                    ------>ZmHOX2a(1)----------->GT1   <---------ZAT18 >ZmHOX2a(2)--------->MYB52(2)          --------->ZAT14             --------->ALFIN1   --------->PCF2   tgagtctgagccgttagtagttgctgatcaaattgttgattcttcactctctcttcctattgggcctagagtgtggagaaaaaagggaaggcccactcaa  12390000                                                                                                    <                                                        <------NtERF2                               -                                              --------->ATHB12                             --------->At4g35610                                          <-----------------AGL3                   --------->HSFB2a(2)                                          ===========================================================      --------->ALFIN1                <---------At4g35610                          ------>ZmHOX2a(1)- ---->ANAC58                 --------->ZAT2  <---------YAB1        --------->At4g35610  ---------->DOF2 >ANAC58                     ----------->RAV1(2)       <---------ATERF1(1)         <---------HSFB2a(2) ---->ANAC58                 <---------ZAT2<----------DOF2<-----------HVH21     --------->ATERF1(1)-- --ATHB12                ----------------->AGL1       <---------DEAR3(1)        <------NtERF2-------- >ANAC46            ---------->DOF2   --------->At4g35610<---------ANAC46     <---------ANAC58 ------ >ANAC58      <---------GLK1(2)   <-----------HVH21  <---------At4g35610      <---------ANAC58------>NtERF2   ggaagaaggtggaacagaaactcaaaggcccatctgggtcatctgcttttattggggctgcgtcgaagaagctcagtaaggcgtcctcgaagaagcggcc  12390100                            --------->ANAC46                            --------->ANAC58                            --------->ANAC58     --------->AtLEC2<---------------AGL15          --------->ANAC58 ----------->RAV1(1) ------->GAMYB               <---------At4g35610                         <------- ------>NtERF2       --------------->AGL15 --------->At4g35610                               -------- ---------ETT(1)     --------->AtMYB61   --------->DAG2                                  --------->ANAC58 ---------->HVH21   --------->MYB46(3)  ---------->DOF2                                  --------->ANAC46 ====================================MADS_MADS--------->At4g35610                        --------->ANAC58 -------->ANAC46   ------>MYB83      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <XXXXXXXXXXXX ------->SPL7      ------>MYB46(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------YAB1 ---------->DOF2 ->RAP2.6(2)       -------->P       <---------HSFB2a(2) --------->LBD16       --------->TOE2(3)    -- --->PCF5         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->ANAC58          <-----------HVH21 <----   ctccgacatgaaaactggtccaaccaaaacaaggaataccagaaaagctgcagcaagcccgagtagttatgttttcccatcgtcaaagaacaagacatct  12390200                                                                                         ============                                                                                         ------>ZmHOX2a(2)                                                                                        <------ZmHOX2a(2)                                                                                        =============                                                                                        --------->GLK1(1)                                                                                       <---------ARR11(3)                                                                                       <-----------ARR10                                                                                       <---------AGP1                                                                                       <---------ARR14(3)                                                                                       --------->ARR11(3)                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                                                                      <---------CCA1(2)                                                                                      <---------At4g35610                                                                                   <---------At4g35610                                                                                   <---------ZAT14                                                                                   <-------TEIL                              =============================HOX2a_HOX2a            --------->ALFIN1                             --------->GLK1(1)        --------->GLK1(2)         <------NtERF2                             <---------GLK1(1)       --------->ARR14(2)         <-------GAMYB                            <-----------ARR10--------->ARR14(2)                --------->MYB55(2)                      ------>ZmHOX2a(2)      --------->ARR11(1)                <---------ATERF1(1)                      =====================================HOX2a_HOX2a         <---------DEAR3(1)                    --------->ARR14(2)       --------->ARR11(3)                <---------MYB46(3)                    <---------ARR14(2)       <---------ARR11(3)               --------->ALFIN1 --ARR11(3)      --------->LBD16   --------->LBD16   <---------ARR14(2)       <---------ANAC46 ->ARR11(3)  --------->DAG2 --------->ARR11(3)--------->CCA1(2)               <---------ANAC58 XXXXXXXXMIR169H-N<------NtERF2   --------->LBD16   <------ZmHOX2a(1)         <---------ANAC58 --------->GT1 <---------LBD16------>ZmHOX2a(2)    *TSS     <---------AtLEC2  <---------DEAR3(1) ------DOF2xxxxxxxxxxxxxxxx>smallRNA(i)      <---------ARR14(2)             --------->ALFIN1   ttggttattttgagtaaggcgggatcgtctgatctccccgattccaagatatgaggattctagcatggaactatcaaggggcgggtgcagatctcacaac  12390300                   <---------ANAC58                   <---------ANAC58                                                              <---                   <---------ANAC46                                                             <----            <---------GLK1(1)                                                                  <-----            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          ------->PIF5          <------ZmHOX2a(1)              <----------DOF2                           <---------KAN4(2) --------->ETT(2) xxxxxxxxxxxxxxxx>smallRNA(i)                                     --------->ARR14(2) --------->WRKY38(1)               <---------GLK1(2)                      ------->TEIL     <-------PIF5 ================HOX2a_HOX2a     --------->LBD16                    <---------SPL7 <---------ARR14(2) ================HOX2a_HOX2a    <-----------RAV1(2)          ---------->DOF2      <---------GLK1(2)   tcgtcgactggaggaaatgtgtcgtttgtattctccaggttttctttttttatcggaaactaaaaaagaccgtatgcatcttcagaatatgcaagtgcct  12390400                                            <---------AtMYB61                     <---------TOE2(3)                                          <---------MYB46(3)                   <---------MYB52(1)       <---------GLK1(2)                 <---------AtMYB61                   ----------->GT1     ----------->ARR10           <------MYB83                              <---------LBD16         --   <----------DOF2               <------MYB46(1)                         <---------ARR14(2)        -- ------MYB52(1)               <---------MYB52(1)                  xxxxxxxxxxxxxxxx>smallRNA(i)    --- ------DOF2                  --------->ATHB12          <----------DOF2   --------->ARR14(2)       <-- -----DOF2           <-------GAMYB       --------->ALFIN1  <---------AHL20(2)--------->LBD16 --------   ttaggctttgattctctccagactgttgaaccgattggtaacagtggtggtcttgctcttttttattcgaaagactatccggttaagtttgtttttctta  12390500                                                                   <---------MYB46(3)                                                                  <--------P                                                                 <---------MYB52(1)                                                                --------->LBD16          --------->ALFIN1                                                              ------>ZmHOX2a(2)        <-----------RAV1(1)                                                             <------ZmHOX2a(2) <---------MYB52(1)  ------>ZmHOX2a(2)                --------->GLK1(1)        --------->ARR14(2)--------->At5g28300 ------->ATHB12          --------->ATHB12                 <---------ANAC58   <---------ANAC58 ------>HAHB4            -------->ATHB1        <----------DOF2<---------LBD16<---------ANAC58      -- ------>ICU4             --------->ATHB51     <---------YAB1<---------ARR14(2)--------->LBD16  <----- -------YAB1            <---------YAB1      <-----------GT1<---------GLK1(1) ----------->GT1<-------- ->TOE2(3)  --------->ARR11(3)     <---------GLK1(1)      <---------ANAC58   <---------ANAC46  <-----   atgatcggcttattgatattgaaactattattgatggaaatcgatattacttttgttatggcgatccggtagttcaataccgtgaattagtgtgggagcg  12390600                                                                --------->ANAC46                                                                --------->LBD16                   ---                                       --------->ATHB12        <---------HSFB2a(2)              -----                            <-------TEIL                       --------->HSFB2a(2)       <---------DOF5.7(2)                           <------ZmHOX2a(2)                  <---------LBD16           <---------WRKY12                          --------->ARR14(2)                 --------->MYB52(1)      <---------MYB46(3)  <-----------------AGL1  --------->AGP1 <---------WOX13(1) <-----------GT1          <------MYB83 === --------->HVH21          <---------ARR14(2)         <---------TOE2(3)               <------MYB46(1) ----ANAC58              <---------At4g35610         <---------TOE1(3)              --------->ALFIN1 -PCF2                   --------->At4g35610      <---------AHL20(2)           --------->DAG2   <---- ----ANAC58          <-----------HVH21<---------YAB1<-----------GT1           ---------->DOF2   <----   tttgactcgtattggtatcgagcgttcagatccatggtttatgattggggattttaacgaaattaccggaaaccatgagaaaaagggtggtaaacgtcga  12390700                                                                                               <-----                                                                                         <---------ORA47(1)                                                                                         --------->ATERF1(1)                                                                                       <------MYB83                                                                  ----------->GT1      <------MYB46(1)                                                        ------>ZmHOX2a(2)             <---------MYB46(3)                                                      --------->ARR11(3)              --------->MYB55(2)                                                      <---------ARR11(3)             --------->ALFIN1        <----------DOF2                --------->ALFIN1<------ZmHOX2a(2)           <---------ANAC58      ------>ZmHOX2a(1)                <-----------RAV1(1) <-----------HVH21       <---------ANAC58<-  <---------ARR14(2)                <------ZmHOX2a(1) <---------ARR14(2)<---------AHL20(2)   <-------  --------->ARR14(2)                =====================HOX2a_HOX2a    --------->AHL20(2)--------->ETT(1) --->ZmHOX2a(2)                <---------WOX13(1)     --------->ARR14(2)--------->AHL20(1)<---------DEAR4(1) ---->ARR14(2)               --------->ATHB12        <---------GLK1(1)  <---------AHL20(1)<---------DEAR3(1) ============HOX2a_HOX2a    <---------YAB1        ------>ZmHOX2a(2)--------->At5g28300<---------AtMYB61 -----AGP1            <-------GAMYB ==========================HOX2a_HOX2a<---------AHL20(2)<---------ORA47(2) -----ARR14(2)    <----------DOF2   ===========================HOX2a_HOX2a    <---------YAB1<------NtERF2   tctgaatcctcttttcttccctttcgttgtatgattgaggactgtgggatgatcgagatcccttcacatggtaatttattctcatgggtgggtcggcgta  12390800  Previous    Next  AGI:  At3g30745.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 3.2e-26 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 12390251    to: 12394354    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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