Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <------ZmHOX2a(2)                                                                             --------->ARR14(2)                                                                             <---------AGP1                                                                             --------->ARR14(3)                                                                             --------->AGP1                                                                             <---------ARR14(3)                                                                             <---------ARR11(3)                                                                             <---------ARR14(2)                                  <------MYB46(1)                      --------->AGP1                                 --------->MYB46(2)        <----------DOF2   --------->ARR11(3)  ----------->RAV1(1)            --------->MYB111(1)      --------------->AGL15           <----------DOF2 -------->LBD16                  --------->MYB59          --------->TOE2(3) <---------CCA1(2) -----GLK1(1)          <---------ANAC58                  <-----------------AGL1    ---------->DOF2 --->ARR14(2)          <---------ANAC58<---------ZAT6    ----------------->AGL1------>ZmHOX2a(2) ----ARR14(2)      ---------->DOF2<------MYB83        <---------MYB52(1)   ----------->ARR10     ----   tccccaacaagtgagtatgggaaaagcttgcatagtaggtagtcttcagagactccattacctttgatggtcagaactagatcttcaaagcgcttgatat  12328900                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              -------                     --------->ANAC58                                                        <-------                     --------->ANAC58<---------ANAC58                                       <--------        <----------DOF2            --------->ALFIN1                   ------>ZmHOX2a(2)     <------NtERF2     <-----------GT1 --------->ANAC46<---------ANAC58               <---------ARR11(3)    <---------DEAR3(1)    <---------ARR11(3)       ---------->DOF2   ---------->DOF2  <---------ANAC58          <---------RAP2.3(3)    <---------AHL20(1)    --------->AtLEC2   <---------MYB52(2) <---------ANAC58          --------->ALFIN1 ------->GT1       --------->CCA1(2)<---------MYB46(3)       <----------DOF2         ---------->DOF2   ggtcaatatacttttcatgagataagccatggaaagggtgcttgccaactaaagcgaagtagcctttcttgatctaatagtcgttcttaaagggggcggt  12329000                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                <----                                                                                                <----                                                                                                <----                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                                                                 <---------ANAC58  <-      --------->ATHB12                                                           <---------ANAC58  <- ----SPL7                             --------->AHL20(2)                       <---------AHL20(2)<--- -NtERF2<---------WOX13(1)        ----------->GT1                     <---------ANAC58       <------- --->At5g28300                  <---------ANAC46                      <---------ANAC58 xxxxxxxxxxxxxx ---DEAR3(2)         <-----------GT1  <---------AHL20(2)             <---------ZAT2  <---------ANAC46 ---->GT1      <---------TOE2(3)<---------ANAC58                     <---------At4g35610 --------->HSFB2a(2) --DEAR3(1) <---------WOX13(1)  <---------ANAC58                     --------->At4g35610 <---------HSFB2a(2) -ABI4(1) --------->ATHB12      <---------ANAC55(1)                  --------->ZAT2 xxxxxxxxxxxxxxxxx   acaatcgctgattgattaacatataacaaatttggcgtgtttaaatccccaagagttcgacgaggttttgtagctggctaattacttgcgtctggaattc  12329100     <---------ETT(2)     --------->ETT(2)                                                               --------->ZAT2    <------NtERF2                                                                   <---------At4g35610  --------->ALFIN1                                                                  <---------ZAT2 ---------ANAC58                       ----------->RAV1(2)                          --------->At4g35610 ---------ANAC58           <---------SPL7          --------->ANAC58                --------->ANAC58 --------MYB46(3)         <---------ANAC58         --------->ANAC58          --------->ZAT2 -----ANAC46              <---------ANAC46         --------->ANAC46       <---------ANAC58 -----ANAC58      <---------STY1(2)    <---------At4g35610 ------>MYB83   <---------ANAC46  <-------- -----ANAC58      --------->ZAT2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------At4g35610 --------DEAR3(1) --------->STY1(2)    <---------ZAT2      ------>MYB46(1)<---------ANAC58 <--------- --------TOE1(2)  <---------ZAT2       --------->At4g35610 --------->ANAC58  --------->At4g35610 ------LBD16     ------>MYB83        <-----------RAV1(2)   --------->ANAC58  <---------ZAT2<-------GAMYB --GLK1(1)       ------>MYB46(1)<<<<<<<<<<GATA-1 --------->ANAC46<---------ZAT2    --------->ANAC58 xxxxxxx>smallRNA(i2)     <---------ANAC58     <-----------GT1   --------->ZAT2 --------->At4g35610 < xxxxxx>smallRNA(i2)     <------NtERF2 --------->ZAT2  ------>NtERF2 --------->MYB52(2) <---------ANAC46   gtgggtgtcgatagacacctagctggtgtcgttcgatacccagctggtttcactcgacaccaagccctgcttcgttgcgagcagcaagctgcgcgttgag  12329200                                          <---------ARR11(3)                                <---------YAB1                              --------->YAB1                           <----------DOF2--------->ARR11(3)                           <---------At4g35610                         --------->At4g35610                                       <-----------TGA1  <------NtERF2          <---------At4g35610                                       <-----------HVH21 ------>NtERF2           --------->ZAT2  --------->YAB1                           --------->YAB1 --CDC5                  <---------ZAT2 <---------ATHB12                   --------->ANAC58 -DOF2            <---------GLK1(2)     --------->ICU4         <-----------------AGL1  <---------CCA1(2) ---------ANAC46  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ATHB12        --------->ANAC58   tcgcgcctattcatctatctgattctcagctttgatgattcaatgatcatccaatctttgtccagtctcatttaggcatgcccatcgtcatctcttaaaa  12329300                                                                          <---------ZAT18                                                                          --------->ZAT14                                                                          <---------SPL7                                                                     <---------ANAC58                                                                 <---------ANAC58                                                                 <---------ANAC58                                                                <---------ZAT18                                                                <-------TEIL                                                             <------MYB83<---------ANAC58                                                             <---------DEAR3(2)                                                             <------MYB46(1)                                                             <---------MYB46(3)                                                            <---------DEAR3(1)                                                            <---------MYB46(3)                                                            --------->ALFIN1                                                            --------->MYB111(2)                                                            <---------AtMYB61                                                            --------->MYB46(2)                                                            --------->MYB55(2)        --------->ANAC55(2)                                                            --------->MYB111(1)    <---------ATHB12                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           <--------P<---------ANAC58 <---------ANAC55(2)                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                           <---------MYB55(1)--------->ANAC46                                                           <---------MYB52(1)--------->ANAC58           --------->At4g35610       *TSS                 <---------MYB52(1) --------->ANAC58     <--        <---------MYB52(1)     --------->ATHB12           <-------GAMYB  <---------ANAC58<----------- ------>ZmHOX2a(1)            <---------YAB1             <---------MYB46(3) --------->ZAT18      <---   ctccttatccattagctctaacttatctgataaccattggtactaatctctgagtttttcggttggtgcgttcttgtgtacgcaaatcaagtattgacag  12329400                                                                                         ----------->RAV1(1)                                                                                        <----------ID1                         <---------ANAC58                                             --------->ANAC58                         <---------ANAC58                                             --------->ANAC58                       <---------YAB1                                        ---------->DOF2           <---------CCA1(2)                                   ------------------------>ANAC81 -------WOX13(1)    <---------YAB1                          ------------------------>ANAC81     ----- -CBF     ------>ZmHOX2a(1)                                 ----------->GT1--------->ANAC58  -------- ---------CBF  <----------DOF2            <-------TEIL    ---------->DOF2  --------->ANAC58--------->MYB46(3)   attgacgaggtccttatcttttgtgattcttgtgagcctatacatacacatgaaacacagaaaagaaaaaaaaaaacaagaaaggagtaggcaacaaaag  12329500                                                                   ------>NtERF2                                                                  --------->ANAC58                          --------->ANAC58                        --------->ANAC46                          --------->ANAC58                        --------->ANAC58                        ---------->DOF2--------->YAB1           ------->GAMYB                  --------->GLK1(2) ------>MYB83               --------->MYB46(3)   --------->YAB1 <---------ARR11(3)------>MYB46(1) <---------ARR11(3)                         ------  --------->AHL20(2) <---------HSFB2a(2)   --------->KAN4(2)   --------->DEAR3(1)             ------- ------>GT1       --------->ARR11(3)--------->MYB52(1) <----------DOF2                      <-------- -->DOF2         <---------GLK1(2)<---------MYB59   --------->ARR11(3)          --------->ANAC55(2)   gaaaataaaaatttagacaaaatctcgaaagcaaaacctaatggtcattcccaagaactttggcaacgacgccaaatttgataagtgttcaaattaaccc  12329600                                                                      --------->ANAC58                                                                      --------->ANAC46                                                                      --------->ANAC58                                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                   <---------ZAT14                                                                   --------->ZAT14                                                                   <---------ZAT18                     ----------->GT1                               --------->ZAT18                  ---------->DOF2                            <----------DOF2 --->TOE1(3)     <---------AHL20(2)                       <---------ARR11(3)                     ---- -->ZAT6      --------->YAB1  <---------YAB1              --------->ARR11(3)                     <--- ---GT1<----------DOF2      --------->YAB1            ---------->DOF2--------->ZAT18            <----   tagactactctttctctaataaaaggtcaattctaatacttagggacttatttccacaaagttcttttgtgcacacaataggttatagtgtcgagattaa  12329700                                                                                   <------MYB83                                                                                   <------MYB46(1)                                                                                  --------->MYB59                                                                                 <---------MYB55(1)                                                                                <---------MYB52(1)                                                                      <---------CCA1(1)                                    --------->ANAC58                 <---------AHL20(1)                        --------->AHL20(2)                           --------->AHL20(1)                   --------->AHL20(2)                    ----------->GT1       --------->TOE2(3)        <---------ANAC55(2)   ---------->DOF2          <------ZmHOX2a(1)  <---------AHL20(2)   ------ ----->At4g35610   --------->AHL20(1)              <---------YAB1    <---------ARR11(3)        <----- ------At4g35610   <---------AHL20(2)          <---------GLK1(2)     --------->ARR11(3)      <------- -----TOE2(3) --------->AHL20(2)    --------->ANAC58 <---------TOE2(3)<---------RVE1(1)      --------   gctaaacaataagtaagaaaataaaataaaacaaaagctagcaatagcagattatgaggatgtaaattcaagatattaaaacgttaggtttagggaagtt  12329800  Previous    Next  AGI:  At3g30716.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 6.9e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 12322340    to: 12329337    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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