Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               xxxxxxxxxxxxxxxx>smallRNA(i)         <--                                                         --------->ATHB12                       xxxxx                                                         <---------MYB46(3)                    xxxxxx                                                        <---------YAB1                <xxxxxxxxxxxxxx                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxx                                                     --------->ALFIN1               <xxxxxxxxxxxxxxxx                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxx                                                   --------->ZAT2                  --------->GLK1(2)                                                   <---------ZAT2                 <---------ARR14(2)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxx                                                  <---------TOE1(2)               <xxxxxxxxxxxxxxxxxx                                                 <-----------RAV1(2)              <---------GLK1(2)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxx                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->ARR14(2)                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 ----------->ARR10 <--                            ---------->DOF2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx                <---------ARR11(3)             xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------At4g35610                --------->ARR11(3)           xxxxxxxxxxxxxxxx>smallRNA(s) --------->ALFIN1  <--------      <xxxxxxxxxxxxxxxxsmallRNA(i)          <---------ICU4   xxxxxxxxxxxxxxxx>smallRNA(s)   --------- ------->ARR14(2)    ----------->HVH21      --------->YAB1   <xxxxxxxxxxxxxxxxsmallRNA(i)   <-------- --------ARR14(2)  <----------DOF2         <---------ATHB12<---------WOX13(1)  <xxxxxxxxxxxxxxxxxxxxx   agttctggcattggagaagaactttgacagaaaagccttcttacaatcatcccaggtggtgattgagtcatggggcatggggcagattcttctcccagat  12226000       ---------->ARF1   <----------DOF2 -------ANAC58                                                            <------MYB46(1) xxxxxxxxxxx>smallRNA(i)                                                 --------->MYB59 xxxxxxxxxx>smallRNA(i)                  <---------ARR14(2)              --------->MYB111(1) xxsmallRNA(s)                           --------->ARR14(2)            <<<<<<<<<MYB98 xxxxxxxxxx>smallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxx>smallRNA(se3)       --------->ZAT2                  <----------DOF2                xxx xxxxxxxx>smallRNA(s2)             <---------ZAT2       --------->bZIP60(1)    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxsmallRNA(fl3)          --------->MYB52(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          xxx xxxxxx>smallRNA(si3)      <---------MYB52(2)    <---------ZAT14 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------ANAC58             --------->MYB46(3)    --------->ZAT14<---------ARR11(3)              <xxxx xxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ARR11(3)              <xxxx -HSFB2a(2)           ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<------MYB83xxxxxxxxxxxxxxx >HSFB2a(2)     --------->YAB1 --------->ANAC46  <---------REM1(2)------>ZmHOX2a(2) xxxxxxxxxxxxxxxxx ---RAV1(2)    <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(i) --------->MYB46(2)  xxxxxxxx xxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)----------->HVH21 <---------MYB52(1)   xxxxxxxxx   gtgtgctttgtctcccaaggagaatggaaacaaacggagcttgaatccgtcttcactgacaccattgatctttgttaggttgcagagcctatcgaattca  12226100                  ------>ZmHOX2a(1)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                ------>ZmHOX2a(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <------ZmHOX2a(2)              <---------ARR14(2)              --------->ARR14(2)              --------->ARR11(3)              <---------ARR11(3)            ----------->ARR10<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->ALFIN1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------MYB46(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------AtMYB61        --------->ANAC58                                                 <-------   --------->ALFIN1         --------->ANAC58                                                 --------  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         <-------- xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxx xxxxxxxxxxxxxxxxx>smallRNA(si3)                     --------->YAB1                        xxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(s2)               --------->LBD16                         <---------YAB1 xxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------LBD16                 <---------HSFB2a(2) xxxxxxxx>smallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->HSFB2a(2) xxxxx>smallRNA(si3)--------->ATHB12          ----------->RAV1(2)      --------->YAB1----------->GT1< xxxxxxxxxxxxxxx>smallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tcaaggtggtcgagtggatcctccattggcaaaccatggaatttgttcccctgaatcatcgagatgagaccactcttaatctcgaagttgttattctgga  12226200                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     --------->ALFIN1                                    <-------MYC3                                    ------->MYC3                                    <-------MYC2                                    ------->MYC2                                    ------->PIF5                                    <-------PIF5                                   --------->TGA1a                                   <---------O2                                   <---------TGA1a                                   <---------bZIP60(2)                                   --------->ANAC55(2)                                   --------->O2                                   <---------ANAC55(2)                                   <---------ANAC46                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             xxxxxxxxxxxxxxxx>smallRNA(s)        <-------TEIL        --------->At5g28300    --------->ALFIN1   ----------->TGA1     <---------At4g35610   <------ZmHOX2a(1) <---------At4g35610    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --HSFB2a(2)         --------->At4g35610    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ->HSFB2a(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -LBD16--------->ALFIN1----------->HVH21   ------->TEIL                    <---------At4g35610 xxxxxxxxxxx>smallRNA(s)  <---------DEAR3(1)--------->At4g35610<---------ANAC58 xxxxxxxxxxxxx>smallRNA(l2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------ANAC58 -----------RAV1(2)  ------>ZmHOX2a(1)   <-------TEIL          <---------AtLEC2 xxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <-----------RAV1(1)   <---------GLK1(2) ----   tagcaggaggtgcgattcccttcctctgacggtgatcacgtggtgcatctccagcaccaatgttggcatggccattttgctgattctgttcttcagccat  12226300                                                                                                    <                                                                                                  xxx                                                                                                 <---                                                                                                 <---                                                                                           <---------YAB1                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)            <---------TOE2(3)                                    <---------MYB46(3)   <---------HSFB2a(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                 <--------P            --------->HSFB2a(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <-------GAMYB          <---------HSFC1(2)         <---------ANAC46                                     <---------MYB46(3) <xxxxxxxxxxxxxxxxxxx        <---------At4g35610                                 <---------ZAT18     ---------->DOF2  <---        --------->At4g35610           <---------DAG2     <----------DOF2      xxxxxxxxxxxxxxxxxxxxxxx       <---------MYB46(3)     <---------MYB46(3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <------      <--------P           <-----------RAV1(1)          <---------DEAR3(1)<---------MYB46(3) xxxxxxxx      xxxxxxxxxxxxxxxx>smallRNA(s)    <----------DOF2 ------>NtERF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->MYB55(2)  <---------WRKY18(1)         -------------->OsCBT  <---------ANAC46xxxxxxxxxxx    <---------MYB46(3) --------->WRKY12            <---------LBD16  <-----------RAV1(1)xxxxxxxxxxxxxx   <---------AtMYB61   --------->WRKY38(1)        <---------ANAC46 <---------TOE2(3)  --------->HSFC1(2)   --------->ALFIN1    ----------->HVH21    <---------YAB1 --------->ALFIN1<-------GAMYB--------->GLK1(2) ----->MYB52(1) <-------TEILxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------RAP2.6(2)<xxxxxxxxxxxxxxxxxxxx   aacgagtggttgctgaggtacagggttgactgtggttctcctttttctgatttcgcgggctgtgcggttgatgttgtcgttgaaaaggaggttctggttg  12226400                                     <------ZmHOX2a(2)                                <---------LBD16                               ----------->RAV1(2)                           <---------REM1(1)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------GAMYB        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------ANAC58       <---------At4g35610 ------ANAC46       --------->At4g35610 xxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       ----------->GT1 ------ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)                             --------->MYB52(1) >smallRNA(fl3)     *TSS   --------->ALFIN1        --------->ANAC58--------->ANAC58 --P  ------>ZmHOX2a(2)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ANAC55(2) xxxxxxxxxxxxxxx>smallRNA(le3)------->TEIL         --------->ANAC58<---------ANAC55(2)       <------- xxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ANAC58      ---------->DOF2 xxxxxxxx>smallRNA(se3) <---------AtMYB61     <----------ID1    --------->At5g28300<------------CBF<- xxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->ANAC46---------->DOF2  --------   cctgttgatcgagttcgcatacagcagaggtgtacctggatcaagaagacaacaagaaaaacacacagtaagtaactgaaaagaaaattgaaaaagaact  12226500                                                      --------->DEAR3(1)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     --------->RAP2.3(1)                                                    <---------ATERF1(1)                                                    <---------RAP2.3(1)                                                    ------->GAMYB                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                   <---------DEAR3(1)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       --------->ANAC58                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       --------->ANAC58 <------NtERF2                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <---------MYB52(2)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxx                             --------->MYB46(3)  --------->MYB52(1)                             <xxxx                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxx                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              -------        <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      --------       <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 --------->YAB1    --------->ANAC58        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      --------->AHL20(2)    --------->ANAC58        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------YAB1       <---------AHL20(2)    --------->ANAC46    ----------->GT1--------->ANAC46------>NtERF2                 <---------ATHB12 ------>ZmHOX2a(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->YAB1      --------->WOX13(1) --ARR11(3)    --------->GLK1(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)----------->GT1    <------ZmHOX2a(2) --------ARR11(3) --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------ARR11(3) ->ARR11(3)    <---------GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->ARR11(3)   tgatctaagcaagtctgaaatctcaaatgtaacaaacaaacacccaattggcaacggcgccaaattgataataggtttttaagatcaattaatcgtaaag  12226600                                                                                                    x                                                                                                    x                                                                                                   xx                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxx                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxx                                            --------->ALFIN1                                    <xxxx                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             <xxxxxx                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxx                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxx                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------ATHB12                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->ANAC58                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              --------->AtLEC2                                        <---------ANAC58                                  --------->ANAC46                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->ANAC58                                        <---------ANAC58                                  <xxxxxxxxxx                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <xxxxxxxxxxx                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                xxxxxxxxxxxxx                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <xxxxxxxxxxxx                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <xxxxxxxxxxxxx                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->ANAC58                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->WRKY18(1)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <xxxxxxxxxxxxxxxxsmallRNA(i)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxsmallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <xxxxxxxxxxxxxxxxsmallRNA(i)                              --------->WOX13(1)             <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxx                            xxxxxxxxxxxxxxxx>smallRNA(i) --------->YAB1     <xxxxxxxxxxxxxxxxsmallRNA(s)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxx                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->WOX13(1)   xxxxxxxxxxxxxxxx>smallRNA(i)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->MYB46(3)   <xxxxxxxxxxxxxxxxsmallRNA(i)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxx          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxx   --------->YAB1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ATHB12  xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i) xxx xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -->DAG2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ANAC58 -->DOF2 <-------GAMYB<---------TOE1(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i)   cactatcatgtcgttgtagtactgaaggttgtcaatccaaatgggtgtgatgctaacaatcaagatgtgatcagaagtcactaagtcaagccaagcaata  12226700               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->HSFB2a(2)               <---------HSFB2a(2)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxx>smallRNA(i)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------ANAC46        <---------ANAC58        <---------ANAC58       xxxxxxxxxxxxxxxx>smallRNA(i)     <---------AtMYB61  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            <---------ALFIN1 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                            ------>MYB46(1) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             ------>MYB83 xxxxxxxxxxxxsmallRNA(i)                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxsmallRNA(i)                                                        ----------->RAV1(1) xxxxxxxxxxxxx>smallRNA(si3)                                                 --------->AtMYB61 xxxxxx>smallRNA(i)                                                         --------->MYB46(3)  <---- xxxxxxxxxxxxxsmallRNA(fl3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(se3)                                                 xxxxxxxxxxxxxxxx>smallRNA(s) xxx>smallRNA(s)        <xxxxxxxxxxxxxxxxsmallRNA(i)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxsmallRNA(i)        ------>ZmHOX2a(1)                                 xxxxxxxxxxxxxxxx>smallRNA(s) xxxsmallRNA(i)>>>>>>>ZML2                                                <xxxxxxxxxxxxxxxxsmallRNA(s) x>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 --------->ANAC46         ----- xxxxxxxxxxxxxxxxxx>smallRNA(se3)           ----------->GT1            <<<<<<<<<TAC1            <---- xxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)              --------->ZAT14     <----------DOF2 xxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)                  <---------ZAT18 <---------At4g35610 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AtLEC2        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----   acaggttttggtgtgttctagcagtcctaagtgaacatgcagaaaacagaaaatcaaacagaaacagtagaacactcgaccaacacagctctttgcagag  12226800                                                                                      <------MYB83                                                                                      <------MYB46(1)                                                                                      <---------MYB46(3)                                                                                     <---------AtMYB61                                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                                               <---------ZAT2                                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    <---------At4g35610                                                                    <-------GAMYB<xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    --------->At4g35610                                                                   <-----------RAV1(1)xxxxxxxxxxxxxxx                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              ------->GAMYB                   xxxxxxxxxxxxxxxx>smallRNA(s)      <----      --------->MYB59      --------->MYB52(1)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------AtMYB61   <xxxxxxxxxxxxxxxxsmallRNA(i)        xxxxxxxxxxxxxxxx>smallRNA(i)     ------    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->ZAT14   <---------MYB46(3)--------->ALFIN1 -----ZAT18              <xxxxxxxxxxxxxxxxsmallRNA(s)         <xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxx ---->ZAT18             <xxxxxxxxxxxxxxxxsmallRNA(s)       <---------ZAT14xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----ZAT14            <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->ZAT18xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---->ZAT14 <---------ANAC46 --------->MYB46(3)  <---------ZAT18   xxxxxxxxxxxxxxxx>smallRNA(i)<-----   cactgagtgaggtcgagtgaatggtcgagtaacagacagaaaatggaacagggtactcgattgcacagtctgttgccagacaactgggtggtcgagtacc  12226900  Previous    Next  AGI:  At3g30668.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 6.6e-229 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 12217723    to: 12226420    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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