Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->YAB1                                                -------->HAHB4                                                <---------ICU4                                               <---------ATHB51                                               <---------YAB1                                               --------->ICU4                                             --------->YAB1 ------>ZmHOX2a(1)                                       <------NtERF2    --------->ARR14(2)                                      --------->LBD16   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        ------>ZmHOX2a(1)   --------->AHL20(2)                 --------->TGA1a     --------->ANAC46   <---------ARR14(2) >GAMYB ------>ZmHOX2a(1)            <---------LBD16   --------->GLK1(1)      <---------AHL20(2) ->RAV1(1)       --------->O2       <---------LBD16    <---------GLK1(1)     --------->AHL20(2)<-----   agtcaaactcctcatactcccgtctccttaccgctatacccggcaaataataatgggagttcctcacccattacgcctattaattcgttgaattcaattc  12154000                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                   --                                                                 <---------ZAT18                   --                          <---------ICU4                        <-----------GT1                  ----                         <---------YAB1                     <---------AHL20(2)              <--------                       --------->YAB1                     <---------AHL20(2)               --------->AHL20(2)                      <---------YAB1               <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    --------->YAB1              --------------->AtSPL8  ---------->DOF2  <---------AHL20(2) <---------------AtSPL8<---------ICU4     <----------DOF2<---------AHL20(1)             --------->AHL20(2) ----ICU4      <---------CCA1(2)       <-----------GT1   <---------ARR11(3)            <---------YAB1   ttacaggtactattctcatatatcatcatcatcgtttattttgactttatattgaaccatatatttttgcacttcaaaggagacagagtattatataata  12154100                                                                          --------->LBD16                                                                          ------>NtERF2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           --------->RAP2.3(2)  ------>MYB83                                                           ----------->RAV1(1)  ------>MYB46(1)                                                        ============================ ---------MYB111(1)                                                     --------->RAP2.3(1) ---------MYB46(2)                                                     <---------ATERF1(1) -------->MYB46(3)                                                     ------>NtERF2 -------->AtMYB61                                                      --------->At4g35610 ------->ANAC58                                                     --------->ZAT2 ------->ANAC46                                                     --------->At4g35610             - ------->ANAC58                                                     <---------At4g35610   <---------- ----->ANAC46                                             <----------DOF2--------->RAP2.6(2)  <------ -AHL20(2)             --------->WOX13(1)       <---------YAB1     <---------ARR11(3)   --------->GLK1(2)   caccaaacacaagagaaaatatagtcaatccatctaatagctcagaagttattaatccaacttttacaagagctgccgcaaaaactagaaaatcaggtta  12154200                                  --------->AHL20(2)       <---------AHL20(2)                                  <---------AHL20(2)       <---------AHL20(1)                              --------->YAB1    <---------AHL20(2) =RAV                        <---------YAB1     --------->AHL20(2)       <---------YAB1 ---------->GT1          --------->TOE2(3)     --------->YAB1   <---------AHL20(2) -RAV1(2)            --------->ANAC46         <---------YAB1    --------->AHL20(2)                  - --P   <-----------GT1----------->RAV1(1)   --------->YAB1 --------->AHL20(2)                <-------   gtaagttatatactatttgatatacaacattatcatataaattgaattataaaaatagtattttatttatatgttatttttgattttttgtattttttaa  12154300                                <---------ICU4                                --------->YAB1                           ----------->GT1                         <---------ZAT18                                 --------->YAB1                         --------->ZAT18                            ------------>CBF                         --------->ZAT14                           <<<<<<<<<<<<<<<<<LFY                       --------------->AtSPL8                    <---------MYB52(2)                       <---------------AtSPL8                    --------->MYB46(3) ---------->GT1      --------->DAG2                           <----------ID1 --------->ARR11(3) --AHL20(2)         ---------->DOF2               ------------>CBF------->GAMYB<------------CBF     <   tgcagaaaatttatccaaaactaaaagtgtaccatcatcacttcgtaagaagaccaatttcaaaacaacaaacaatggtgatattgttaacaaaacaact  12154400                                                                        --------->AHL20(2)                                                   ----------->GT1  <---------AHL20(2)              <---------------AGL15   <---------AHL20(1)        <---------YAB1              <----------DOF2         --------->AHL20(1)        <---------AHL20(2)              --------------->AGL15   --------->AHL20(2)     <---------AHL20(2)          <---------ANAC55(2)        --------->ATHB12              <---------AHL20(2)    <---------AHL20(2)     <-------TEIL      <---------WOX13(1)      ----------->GT1    <-----------RAV1(2)--------->AHL20(2)   --------->ANAC55(2)     <------------CBF       *TSS     --------->AHL20(2)     --------->AHL20(2)    --------->CCA1(2) < ---------AHL20(2) ---------->DOF2   <---------AHL20(2) <---------YAB1  <---------AHL20(2)     ------   attaaaagattgatagcttttaaaagaatggccagaaaaataaatttcccatcaggttataattttataattttttaaatatagatacaatacatattag  12154500                         --------->MYB111(2)                         --------->MYB55(2)                         <---------MYB46(3)                       <-------GAMYB             --------->LBD16                       <---------ANAC58        <---------LBD16                       <---------ANAC58        --------->At4g35610         <---------YAB1<---------ANAC46       --------->MYB52(1)        <---------AHL20(2)                  ===========================HOX2a_HOX2a        <---------AHL20(1)          <-----------RAV1(2)      <---------YAB1  --------->MYB52(2)    <------ZmHOX2a(2)   <---------AHL20(2) <---------MYB46(3)   <---------ARR11(3)                              --------->HSFB2a(2)   <---------YAB1     --------->MYB55(2)   --------->ARR11(3)                  <---------ANAC46  <---------AHL20(1)  <------MYB46(1)     <------ZmHOX2a(1)                  <---------ANAC46 ---------YAB1        <------MYB83  <---------LBD16                <---------ATHB12       <---------LBD16 ----->GT1 <<<<<<<<<<GT-3b<-------GAMYB<------ZmHOX2a(1)        ------>ZmHOX2a(1)<--------P<---------HSFB2a(2)   ttaatattattatttttcttaagttggttgttgttttttcaggaggatcaccggacttcttaactcctaatcaattgtttggggtagattactctggaaa  12154600                       <---------LBD16                   --------->ARR11(3)                   <---------ARR11(3)                                     --------->DAG2                  --------->CCA1(1)                                      ---------->DOF2                  --------->RVE1(1)                                ---------->DOF2                  <         --------->CCA1(2)    <---------ARR14(2)                --------->YAB1                    <--        --------->ARR14(2)    --------->ARR14(2)               <---------ATHB12           <---------TOE2(3)        <---------ARR14(2)    --------->GLK1(2)                <---------ATHB51     <---------ATHB12-   tgtcttatcggatataacaaatatctctggagaatccatcgtctctaccattagattaatgtccaataataaagaaaaagtatcaaatgatcaaggtttg  12154700                                                                                       <---------AHL20(2)                                                                                      <---------AHL20(2)                                                                                      <---------AHL20(1)                                                                                      --------->AHL20(2)                                                                                   <---------AHL20(1)                                                                                   <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                   <---------ICU4                                                                                   --------->YAB1                                                                                  --------->ICU4   <-                                                                                --------->YAB1    <--  <---------YAB1                                                               <---------AHL20(2)<--- ---------AHL20(2)                                                         ----------->GT1      ----- -------WOX13(1)                                                     --------->ICU4<--------ATHB1<--- -------->AHL20(2)       <-----------GT1                --------->YAB1  <-----------RAV1(1)    <-----   atttatatttgatagtagctatatatgttacattttagtttgtttgtctaatgtccaatagtcaaacagaaattatgttgtttaataattttttttgttg  12154800                                                                    --------->ANAC58                                                                    --------->ANAC58                                                                  <---------ALFIN1                                                               <---------bZIP60(1)                                                               --------->bZIP60(1)        --------->ATERF1(1)                                 ----------->HVH21       <---------GLK1(1)                                  --------->ANAC55(2)     <------ZmHOX2a(1)                                    <---------ANAC55(2) --------MYB46(3)                                         <---------ANAC58 -------WOX13(1)                 ---------->DOF2          <---------ANAC58 ------ANAC58                   --------->YAB1            --------->ANAC46                <---------YAB1 ---->ATHB12                   <---------ATHB12          ------->TEIL              --------->ARR11(3) ------ANAC58                  <<<<<<<<<ARR2         <---------------AtSPL3----------->TGA1 --------- ----YAB1--------->ZAT18  <-----------GT1            <---------------AtSPL8<---------ATHB12<---------ICU4   attgttaggagtcccccattcaactaaattacaatcaaaggagaatgctacaagtattgtacgtgacaacacgctcaatgacgaagaaattgatcattct  12154900  Previous    Next  AGI:  At3g30560.1    Description:  transposable element gene. similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285) Range:  from: 12154428    to: 12160021    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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