Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->ICU4                --------->ATHB12         ---------->DOF2 <------ZmHOX2a(1)                <--------ATHB1   <---------YAB1  ---------->DOF2 <----------DOF2       <---------YAB1         --------->ICU4 ---------DOF2   --------------->AGL15                   --------->ICU4       ---------->DOF2 -----ARR11(3)   <---------------AGL15                   <---------ATHB12  --------->YAB1 ---->ARR11(3)  <-----------------AGL3             --------->ZAT18      <----------DOF2   gctttattattcaaagaaactaaaagaggaaagattactttgttgtcaccaagagcacaatgattcaattgatacttttataaagatgagaagaagagtt  12021500                                                   --------->CCA1(2)                                        <---------MYB59                                       <---------ANAC55(2)    <---------ARR11(3)                                       --------->ANAC55(2)    --------->ARR11(3)                                    ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              --------->ARR11(3)  --------->AHL20(1)                          ---------->DOF2    --------->AHL20(2)                <-----------GT1                    -------->P<---------ARR11(3) --------->AHL20(2)    -------->P<---------AtLEC2   <   gttttgagacaattctcaaacttaccatcaaagttctccttacataactaaatatatgagtcactatcttgctaacccttgttacatggcccatttcatg  12021600                                             ------>ZmHOX2a(1)                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         <---------ARR14(2)         --------->PCF2            <---------ICU4               ------->TEIL               --------->ZAT18 <---------TOE2(3)            --------->YAB1               --------->ARR14(2)     --------->MYB52(1)  <---------TOE1(3) ----------DOF2                <-----------------AGL3         xxxxxxxxxxxxxxxx>smallRNA(i)          <   ggcttttgggttactcatgagacactatattgggcttcatatggatcctctaacatctattagacttaagggcccagaccatagttagggttttcaatgg  12021700                                                                                                 ----                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      <----                                <------MYB46(1)                                                xxxxxx                                <------MYB83                                                   ------                               <---------AtMYB61    <---------AtMYB61                          ------                      <---------ARR14(2)   ---------->ID1                         ------>ZmHOX2a(1)               --------->ICU4  --------->MYB59   <----------DOF2              ------->TEIL    ------- ----------->GT1      ------->TEIL   ------>ZmHOX2a(1)   xxxxxxxxxxxxxxxx>smallRNA(i)     <---------- ------ZmHOX2a(1)     --------->ARR14(2) <-----------RAV1(1)        ------>ZmHOX2a(1)  <----------DOF2   aaggagtaaattttgtcaaaattgaatctgggtttggtcctacttgttgctcttttggtgttcttagttcctccttgatgaatccttctcttttaccaat  12021800                                                     <---------ICU4                                                     --------->ATHB12                           <---------YAB1           <---------YAB1                     <-----------RAV1(1)            --------->ICU4 ----->YAB1      <----------DOF2                    <---------ATHB12      <---------ANAC58 -----ATHB12     <---------DAG2                    <---------TOE2(3)      <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(se3)                   --------->YAB1          --------->ALFIN1 >MYB83      <---------ARR14(2)             --------->YAB1              --------->ALFIN1            < >MYB46(1)   <---------ZAT14               <---------YAB1        <-------MYC3                  <----- -->WOX13(1) --------->ARR14(2)          --------->YAB1       --------->YAB1                 <-------GAMYB -GT1        --------->ZAT14    <---------ZAT14   <---------ICU4 ------->MYC3               <--------   cacatagtttctgagtatactttatgttgatgactgttctatatgatgatactaatgatttgaatcatgtgcaagtgtgtgtgtgtgtgtgtgtgtgttg  12021900                            <-----------GT1                        ------>ZmHOX2a(1)                    --------->GLK1(2)                   --------->ARR14(2)                   <---------GLK1(2)--------------->AGL15 --------->ZAT2                   <---------ARR14(2)                     --------->STY1(2)                  --------->HSFB2a(1)                     <---------STY1(2)     *TSS         <---------At4g35610                    --------->ANAC46                <-----------GT1 ---------AtLEC2  --------->At4g35610                    --------->ANAC58           ---------->ID1 ----MYB46(3)     <---------HSFB2a(1)        <------ZmHOX2a(1) <------ZmHOX2a(1)  <-----------RAV1(1) ---RAV1(1)    <---------At4g35610 ----------------->AGL2--------->ANAC58     ------>ZmHOX2a(1) <----   ttgaatggctcttgttcggcagattcctattttctcatccagtattaggaattggcaacaagctaggaccaatttgagtcctatttgttgtttacattac  12022000                                                                                                    <                                                                                                    =                                                                                                   <-                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              =======                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              =======                                                                                              -------                                                                                              =======                                                                           --------->TOE2(3) --------                                                                         ------->TEIL       <--------                                                                    =================================                                                                    =================================                                                                    <-------GAMYB           <--------                                                                   <---------MYB46(3)     <---------ALFIN1                                                             ---------->DOF2            =============                                                             ========================================                                                --------->CCA1(2)  <---------DEAR3(2)   ------->GAMYB                <-----------GT1                --------->ARR11(3) <---------RAP2.6(2)   =============     ------->TEIL    <----------DOF2  <----------DOF2      <------ZmHOX2a(2)         --------->ARR14(2) -----YAB1  <<<<<<<<<TBF1     ---------->DOF2  <---------ARR11(3) <---------DEAR3(1) <---------ARR14(2)   aatactgcatcttcttcttcaccctttgcagagaaagactcttttgagagatactagagggatcaaaggcggttgaaccttgatgcataaccccacacgt  12022100                                                       <---------ANAC46                                                       <---------ANAC58                                                       <---------TGA1a                                                       <---------ANAC58                                                       ===========================================bZIP_DOF        <-------PIF5                                   <---------O2        ------->MYC2                                   =====================================MYC_MYB        <-------MYC3                                   <---------bZIP60(2)        ------->PIF5                                   <---------ANAC55(1)   <-----------HVH21                                  <------NtERF2  <---------MYB46(3)                                  <-----------------------TaNAC69(2) -------GAMYB                                       ----------->HVH21 ================MYC_MYB                           -------->ABF1 --------MYB46(3)                                  ------->MYC3 ---->ALFIN1                                       ------->MYC4 ->MYC4 <-------MYC2                               <-------MYC3 --MYC2<---------bZIP60(2)                         <-------MYC2 ->PIF5<---------TGA1a                             <-------PIF5 --MYC4<---------O2                                ------->MYC2 ->MYC2--------->TGA1a                             <-------MYC4 --PIF5--------->O2                                ------->PIF5 ->MYC3===============================bZIP_DOF    <---------ANAC55(2) --MYC3<---------ANAC58                           --------->ANAC55(2) ->PIF4--------->ANAC55(2)                        >>>>>>>>>>HY5 --PIF4<---------ANAC55(2)                        --------->O2 =====================================bZIP_DOF    <---------bZIP60(2) ---TGA1a                                         --------->TGA1a ---O2 <---------ANAC46                           <---------O2 -->TGA1a--------->ALFIN1                         >>>>>>>>>>AtMYC2 =======MYC_MYB                                   ==========================================MYC_MYB -->O2 <---------ANAC58                           <---------TGA1a ================bZIP_bZIP                        >>>>>>>>>>ABI5 ---->OsbHLH66     --------->ANAC58               ================================================bZIP_DOF -ALFIN1------->MYC3       ---------->DOF2   ----------->HVH21  <---------ANAC58             -------- ================MYC_MYB   =================================bZIP_DOF                      <---------At4g35610 ===MYC_MYB        --------->ANAC58        --------->At4g35610  <---------ANAC58       ---------->DOF2 ----OsbHLH66      ----------->GT1       <------ZmHOX2a(1) --------->ALFIN1          <---------MYB52(1) ================MYC_MYB   ======================================bZIP_DOF           <-----------HVH21 ===bZIP_DOF       <---------ANAC55(2)--------->YAB1--------->ALFIN1                <---------RAP2.6(3) ===MYC_MYB   --------->GLK1(1)       <-----------RAV1(2)--------->ALFIN1           <-------GAMYB   gcggttgtcacgtgggaaatcaagtaaaataaagaaggaatcaggagttgacacgtggcgtgtgaggctggccgattcaagtttgccgttagagcagcta  12022200             <----------DOF2                                           <---------ZAT2       --------->ZAT6                                  --------->TOE1(3)   <------MYB83    ----------->HVH21        --------->YAB1            --------->YAB1 --------->ANAC58  --------->At4g35610    --------->ICU4                --------->TOE2(3)   <------MYB46(1)    -------  <---------At4g35610  --------->YAB1                ------->TEIL     --------->ANAC58        <------  --------->ZAT2    <----------DOF2    <---------MYB52(1)    <---------ARR11(3)               ------- ->At4g35610 <---------DAG2 <---------YAB1    --------->ICU4 --------->ARR11(3)               <------   tatgagctgactctacttttctctttcattatcaaaaaaccattagtaaacattgaatcttaaaatctttgtaagctaggtttatctcatcttgggagct  12022300            <---------ANAC46                       --------->GLK1(2)            <---------ANAC58                ----------->HVH21      --------->ATHB12                    <------MYB46(1)                               --------->GLK1(1)     <---------YAB1                       <------MYB83----------->GT1                  <------ZmHOX2a(1) -->ZAT2    <---------ANAC58             <---------MYB46(3)                      <---------LBD16 ---ZAT2<---------WOX13(1)               --------->MYB46(2)                      <---------At4g35610 -->At4g35610           ------->TEIL   <---------MYB52(1)    --------->YAB1   ---------->DOF2 ---At4g35610 --------->ALFIN1    <-----------GT1 <---------GLK1(2)        --------->WOX13(1)   agcgattgtgattggggtgtttcatgaacatcgatttgactgtttggtgacagaatttgttaattagaagtatttttcaattaagcggaggaatccatag  12022400  Previous    Next  AGI:  At3g30405.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.1e-154 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 12021905    to: 12027505    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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