Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------ZAT18                      <---------ZAT6                             --------->ZAT18               <---------DOF5.7(2)                              <---------ANAC46            --------->At5g28300    --------->ANAC46             <---------ANAC58       ----------->HVH21    ----------->GT1                     <---------ANAC58                    <      --------->At4g35610 ---------->DOF2              <-----------GT1      ----------->GT1       <-- >NtERF2----------->RAV1(1)--------->DAG2            <---------GLK1(1) --------->REM1(1)   <-------TEIL   ctacaatcagcgacagtaaacgtagtcgtaaagttaaacgacgttttggcgatggatttacgactagcgtgctacaactcgaaaaattgtagttacatag  12001000                                          <---------MYB52(2)                                         --------->ANAC58                               <---------ARR14(2)                               --------->ARR14(2)                           <------NtERF2 --------->ANAC58         --------->ATHB12                           <---------At4g35610          ---------->ID1                    --------->MYB52(2)      <-----------GT1    <---------DEAR3(1)   --------->MYB46(3) <---------AHL20(2)     <---------MYB52(1) ---------MYB52(1)      --------->ATERF1(1) --------->MYB52(1)   <---------YAB1 <-----------RAV1(1) -------MYB46(3)<---------AHL20(2)    <------NtERF2   ----------->HVH21        <---------TOE2(3)   tcgttgttttacgactattttatggagtcggcagatagtcggcaagtaacgactatttgacgcttatattattgaagggataatgttgtcgttacttagt  12001100                                                                                               <-----                 <---------At5g28300                                                          -------                <-----------GT1                                                               <------       --------->MYB46(3)                                                                    <-------     --------->MYB52(1)    --------->AHL20(2)           <------ZmHOX2a(1)        --------->ZAT14     <-----------GT1       <---------AHL20(2)       <---------ZAT14             ------>ZmHOX2a(1)     <---------DOF5.7(2)   <---------AHL20(1)   ------>NtERF2          xxxxxxxxxxxxxxxx>smallRNA(s)   cgctaattaacgactattctaccgtctattttatttagtcgctaatttggcgactacaggacgactagttgtcttagtcgtcctgtagtcgtagaaacgt  12001200                                                             <---------AHL20(2)                                                             <---------ICU4                                                             --------->ATHB51                                                            --------->ICU4                                                          ------>MYB83                                                          ------>MYB46(1)                                                        <---------MYB111(1)                                                        <---------MYB59                                                       --------->ANAC55(1)                                                       --------->ANAC46                                                    <-------TEIL                                                 <------MYB83--------->AHL20(2)                                                 <------MYB46(1)                                                --------->MYB46(2)                                                --------->MYB59                  --------->MYB111(2)           --------->MYB111(1)                  --------->MYB111(1)           <---------------AtSPL8 ------HVH21  --------->DAG2                    --------------->AtSPL8     ----------->GT1 -->O2  ----------->GT1      ------->MYC3   --------->MYB111(1)      <---------REM1(1) ---O2  <---------ANAC46  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------AHL20(2)                 x --HSFC1(2)  ---------->DOF2 <-------MYC3  <--------P--------->REM1(1)    <---------ZAT6          <--   cgcacaagagtcgtataaagtagttggaaaacgtgtttcgcattggtaagtaggtacacctaattatttagttgtagtcgtaaattagtcacaaaaactg  12001300                 --------->ANAC58                 --------->ANAC58                 --------->ANAC46               <---------DOF5.7(2)        --------->YAB1             --------->DOF5.7(2)         <---------ATHB12            --------->TOE1(3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->YAB1                  --------->MYB46(3)                                <------------CBF    <---------AHL20(2)             ----------->RAV1(1)                   <---------AHL20(1)        *TSS   --------->AHL20(2)            --------->MYB46(3)                   --------->AHL20(2)           <-  ----------->TBP--------->ANAC55(2)------>MYB83            ---------->DOF2          <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)------>MYB46(1)      --------->TOE2(3)      <---------MYB52(1) <- -------ANAC46<-------TEIL  <----------DOF2           ----------->RAV1(1)--------->AHL20(1)        <-   gcctatataataaacgttcacgaaactcttctttcaccaacaaatcaaaacaacaacaacatcaaagaaaaaaaaaatattagttagtttattgtataat  12001400                                                                                                   <-                                                                                              <------                                                                                             --------                                                                        <---------LBD16      <-------             <---------ICU4                                            <---------ANAC46   --------->ARR14(2)             --------->YAB1   <---------ARR14(2)                       <---------O2      xxxxxxxxxxxx            <---------ATHB51<---------MYB46(3)                         <---------bZIP60(2)<---------ARR14(2)            --------->ICU4  <---------DEAR3(2)                       --------->MYB52(1)--------->RAP2.6(2) --------ANAC58            <---------ANAC46                         ----------->HVH21<---------At4g35610 --------ANAC58     <---------SPL7                                  ----------->TGA1 --------->At4g35610 --------ANAC46<---------YAB1<-------GAMYB                --------->CCA1(2)      <-----------HVH21<--   ggcgagaaactacaattatggtggtactggcggtttctatcgagattggatgtacaagagatttgatgaagtgacggggaatttgtcagccgaatacgtc  12001500                                                 --------->ZAT14 <------ZmHOX2a(1)                               <---------ZAT14 --------TOE1(2)                            --------->ZAT14                               --------->YAB1 -----HVH21                                 <---------ZAT14      <---------AHL20(2)      --------->ICU4 ->ANAC46                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ZAT6 --ANAC55(2)  --------->YAB1       <---------------------WRI1    <---------YAB1 <---------ANAC46 xxxxxxxxxxx>smallRNA(se3)         <---------At4g35610    --------->At5g28300 <---------ANAC46 ---------RAV1(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ----------->GT1  ------>ZmHOX2a(1) ---------   gcaggagttgagcaattcatgacattcgctaatagtcagccaatagtacagagtagtcgaggtaaatttcattgtccttgtagtgtatgcaagaatgaaa  12001600                                                                     <------MYB46(1)                                                                     <------MYB83                                                                     <---------ANAC46                                                                    --------->MYB59                                                                    --------->MYB46(2)                                                           <---------ICU4                                                          <---------YAB1             <--------P                                   --------->ICU4                            -         <---------ANAC46                    <------ZmHOX2a(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ANAC46  <---------ZAT6          <---------TOE1(3)    <---------YAB1            --------->ICU4 -->GT1  <---------LBD16                   <---------TOE2(3) <---------YAB1  <---------AtLEC2------->TEIL   aacacatcatctcgggtagaagagttagtagtcatttgtttagttaaggatttatgtctgattattatgtttggtataagcatggagaagaaatgaatat  12001700                                                                          <---------------AGL15                                                                         <-----------------AGL3                                                                         <-----------------AGL2                                                                         <-------TEIL                                                                         ----------------->AGL2                                                                         ----------------->AGL3                                                                       <---------ARR14(2)                                                                       <---------ARR11(3)                                                                       --------->ARR11(3)          --                                                                 --------->HSFB2a(2) xxxxxxxxxxxxxxxx                                                                 <---------HSFB2a(2) xxxxxxxxxxxxxxxx                                                       <------MYB83<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           --------->YAB1      <---------REM1(1)    --------->CCA1(2)                                    <---------ZAT6     <------MYB46(1) --------->ARR14(2)  <---------DOF5.7(2)                                <---------AHL20(2)    <---------MYB46(3)<------ZmHOX2a(2) <---------WRKY38(1)                             ------->TEIL  <---------ICU4   <-----------RAV1(1)    <---------ARR14(2)                          <---------ANAC55(2)        --------->ALFIN1 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          --------->ANAC55(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ARR14(2)     <------ZmHOX2a(1)  <------ZmHOX2a(1)--------->GLK1(2)  --------->ICU4--------------->AGL15  <--- -------->CCA1(2)   <---------MYB52(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxx   ggatataggaacgagttacaccgataggacgtattttagtgagaatcatgaagaagtgggtaatgttgtagaagatccatatgtggatatggtgaacgat  12001800                                                                      --------->ARR14(2)            <                                                                      <---------ARR14(2)            -                                                                     <----------TaMYB80            <-                                                                     --------->GLK1(1)            ---                                                                     <---------GLK1(1)           <---                                                                    --------->ARR14(2)           <---                <---------ANAC58                                    ---------->TaMYB80           ----                <---------ANAC58                                    <---------ARR14(2)           <---             --------->ALFIN1                                     --------->LBD16                <---           <---------ANAC58                                      <---------ANAC46               -----           <---------ANAC58               --------->YAB1        <------NtERF2                  <-----           <---------O2                  <---------YAB1         <---------LBD16               -------       <---------AHL20(2)              --------->YAB1           --------->ATERF1(1)     --------->ARR14(2)      --------->YAB1                   <---------ICU4          ------>NtERF2 <----------DOF2  <xxxxxx  --------->AHL20(2)                --------->YAB1             <---------ATERF1(1)      <---------ARR14(2)  <---------AHL20(2)    --------->YAB1<---------YAB1          --------->ARR14(2)        --------->GLK1(2) --------->AHL20(2) <---------YAB1  <---------ICU4            <---------ARR14(2)       <---------CCA1(2) ----->TEIL<---------ANAC46        --------->ICU4           ------->GAMYB --------->LBD16 <---------LBD16 xxxxxx>smallRNA(le3)  <---------YAB1 --------->ICU4     --------->MYB52(1)  <---------DAG2   <------ xxxxxx>smallRNA(se3)--------->YAB1<---------YAB1       ----------->HVH21<---------RAP2.6(2)--------- ----TEIL <---------TOE2(3)      --------->YAB1        <-----------HVH21<---------LBD16<---------ARR14(1) x>smallRNA(le3)<---------ANAC46<---------YAB1     <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------At4g35610   gcatttaattttaacgtggggtatgatgataactatcatcatgatgatagttagccctgtaacggagccggatatccggctttttcagcgtatccggatc  12001900  Previous    Next  AGI:  At3g30393.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 7.1e-144 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus) Range:  from: 12001399    to: 12006150    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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