Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------ZAT6                         <-----------GT1     <---------YAB1                  --------->TOE2(3)       <---------YAB1                 --------->HSFB2a(2)           <-----------GT1             <---------TOE1(3)           --------------->AGL15  <---------ARR14(2) <---------AHL20(2)<---------YAB1  ---------->DOF2   <---------HSFB2a(2)   <-----  --------->ARR14(2)--------->AHL20(2) <---------TOE2(3)--------->DAG2<---------YAB1          -------   gtcgaatactgttttactaacatttattagccacttcgattaagattattgttagcaaaaagtttttttttttttatagaaaaaactatgttttagatac  11996000                             --------->AHL20(2)                           ----------->GT1                          ----------->GT1                                                     -------              ------>ZmHOX2a(1)                                                               ------- --TEIL--------->MYB59  ---------->DOF2--------->YAB1                                       ------->TEIL -->CCA1(2)  --------->TOE2(3)    <-------TEIL                     --------->AHL20(2)      <---------   aatgtgagttaggctccttaaattttaaaagttaaatacatttatacttaaaaatagttggaaattcaaatttatacataaatatgtcaatttgaacctt  11996100                      --------->ARR11(3)                      <---------ARR11(3)                <---------ZAT6         <---------AHL20(2)                                                    <---------ANAC55(1)     --------->AHL20(2)                                <---------ANAC46        <---------ANAC46 -->TOE1(3)   <------MYB46(1)    ---------->DOF2       <---------ANAC55(2)----------->GT1 -->TOE2(3)   <------MYB83      --------->AHL20(2)<---------MYB46(3)  --------->ARR11(3)<---------TOE2(3) --GT1<---------AHL20(2)  --------->YAB1   <-----------GT1     <---------AHL20(2)   ------->TEIL   atacccattaaatatttggtgttagatatcaaaataaaagaaaattaaccatttgttacttatattgaattggatattgttacatgtatttatgtttttt  11996200                                                                              <---------AHL20(2)                                           <-----------GT1         <---------YAB1--------->YAB1                                        --------------->AtSPL8     <---------AHL20(2)                                    <---------TOE2(3)             <---------AHL20(1)         <-------                             <---------AHL20(1)                   --------->AHL20(1)         <-------               <---------YAB1--------->AHL20(2)                   --------->AHL20(2)   --------->TOE1(3) --------->AHL20(2)          <---------AHL20(2)     --------->AHL20(2)       --------->AHL20(2)  <--- <---------AHL20(2)         --------->AHL20(2)      <---------AHL20(2)   <---------YAB1--------->TOE2(3)   tttttaattttgaaactttgatagaaaccattaaatttaagttttgtactatatttatttgtcgaaaatataattgtcattaaatataacattaacttta  11996300                                        ----------->GT1                                       --------->MYB59                                       <---------TOE2(3)                                ---------->DOF2                               <---------AHL20(2)                      --------->GLK1(1)--------->DAG2        <---------ANAC46   ------>ZmHOX2a(1)                                         <---------YAB1        --------->ANAC55(2)<---------------AGL15                                   <-----------GT1      <-----------GT1 <---------GLK1(1)<---------TOE1(3)                        <---------ICU4 ---DOF2<---------ANAC58   --------------->AGL15                        <---------ATHB12 --DAG2 <---------ANAC58  ----------------->AGL3       --------->AHL20(2)     <----------DOF2 ------YAB1        <---------YAB1 <---------TOE2(3)    <---------AHL20(2)<---------ICU4        ------   ttcttaagttacgttgttattttgatttcctatataaaggtaaggtaacttcattttttaaataacaaatacaaatcattctttattacgatttgtttag  11996400                                                                                                    x                                                                                                   <-                                                                                                 <---                                                                                                 <---                                                                                               <xxxxx                                                                                              <xxxxxx                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                           <---------ANAC46                                                                                           <xxxxxxxxx                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         <---------ANAC58                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         <---------ANAC58                                                                                        xxxxxxxxxxxxx                                                                                        <---------AtMYB61                                      --------->CCA1(2)                                 <xxxxxxxxxxxx                                     --------->ARR11(3)                                xxxxxxxxxxxxxx                            --------->YAB1                                             xxxxxxxxxxxxxx                           <---------ATHB12                                            xxxxxxxxxxxxxx                         --------->WOX13(1)        <-----------GT1                     xxxxxxxxxxxxxx                 <---------CCA1(2)   --------->ARR14(2)                                xxxxxxxxxxxxxx             <---------ANAC46        <---------ARR14(2)    <---------At4g35610         xxxxxxxxxxxxxx             <---------ANAC58        <---------ARR11(3)    --------->At4g35610        <----------DOF2      --------->YAB1   ------------>CBF    *TSS   <-----------GT1                   xxxxxxxxxxxxxxxxx ----->GT1   <---------ANAC58      ----------->ARR10 --------->ZAT6       --------->ATHB12xxxxxxxxxxx   taaaacaagaatatttcttgtatatttcaatcataagtagatatgtctaaatttaactctcagattactatgctattcattgttttagctttggtgtgtg  11996500       ------>NtERF2       --------->LBD16      <---------RAP2.6(2)     <---------LBD16 <---------MYB46(3) --------->MYB52(2) xxxxxxxxxxxxxxx>smallRNA(s) --------MYB52(1) ------ANAC58 ------ANAC58 xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <xxxxxxx ->ALFIN1                                                                                    xxxxxxxx --ANAC58                                                                                    xxxxxxxx --------------->TaNAC69(2)                                                                 <xxxxxxxx --ANAC58 <----------DOF2                                                                 <---------YAB1 xxxxxxxxxxxxxxsmallRNA(fl3)                                                            xxxxxxxxxxxxx xxxxx>smallRNA(s)                                                                     <xxxxxxxxxxxxx xxxxxxxxxxxx>smallRNA(s2)                                                        <-------GAMYB xxxxxxxxxxx>smallRNA(le3)                                                       <---------ANAC58 xxxxxxxx>smallRNA(le3)                                                          <---------ANAC58 xxxxxxxxx>smallRNA(l2)                                                xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxsmallRNA(se3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)--- xxxxxxxxx>smallRNA(se3)                                           xxxxxxxxxxxxxxxx>smallRNA(i)   <-- xxxxxxxxx>smallRNA(si3)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--- xxxxxx>smallRNA(le3)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)--- xxxxxxxx>smallRNA(le3)                <-----------GT1         <---------YAB1<xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxx>smallRNA(fl3)       --------->ANAC58               --------->AHL20(2)--------->ZAT18   <-- xx>smallRNA(i)           --------->At4g35610             ----------->GT1xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxx>smallRNA(l2)   ---------->DOF2--------->AHL20(2)<---------ANAC58 ------>ZmHOX2a(1)<---------AHL20(2) xxxxxxxxxxxx>smallRNA(le3)    --------->ANAC58         <---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   cgtttgttccggctttctaagtcgaagaagcggaagcaaatttactatggaaaacttgtcttgttaaaattactcctaagtgtgcgttggatataatcgc  11996600                                                                        --------->CCA1(2)                                                                       --------->ARR14(2)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                     --------->ANAC58                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ARR11(3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------AHL20(2)                                                 ---------->DOF2   <-----------GT1    <---------AHL20(1)                                           <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ARR14(2)                                           ------>ZmHOX2a(2)      <xxxxxxxxxxxxxxxxsmallRNA(i)                                          <------ZmHOX2a(2)       <xxxxxxxxxxxxxxxxsmallRNA(s)                                         <---------ARR11(3)      <xxxxxxxxxxxxxxxxsmallRNA(i)                                         --------->ARR11(3)  xxxxxxxxxxxxxxxx>smallRNA(i)                             <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ALFIN1        <---------ARR11(3)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <-----------HVH21<---------AHL20(2)    <----------DOF2         ------>ZmHOX2a(2) <-----------HVH21<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(le3)          ------->GAMYB      --------->DAG2        --------->AHL20(2) xxxxxxxxxxxxxxx>smallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(fl3)       <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxsmallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(s)    ---------->DOF2     xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxx>smallRNA(se3)----------->RAV1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ANAC58--------->AHL20(2) xxxxxxxxxxsmallRNA(i2)   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------>ZAT2          <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------AHL20(2) -------ZAT2         xxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------>ZAT14        <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(1) ------>At4g35610   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------At4g35610   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tgctgtctttgaaaatgaaacaatgcctgatccttgttgcaacgatctcgtcaaagaaggaaaagtgtgtcacgatacgcttattaaatatattgcaaat  11996700                                                              <---------CCA1(2)                                                    <---------ZAT18                                               <---------ANAC58                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <------ZmHOX2a(1)            <---------ANAC46  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                 --------->ANAC46              <---------ANAC58------->TEIL                     -----                --------->LBD16           <XXXXXXXXXXXXXXXXXXXXMIR398A <---------ARR11(3)<xxxxxxxxxxx               <---------LBD16        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------ANAC58               <-----------RAV1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)        <---------ANAC58          <---------WOX13(1)        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->MYB52(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->DAG2--------->ANAC55(2)       <---------YAB1              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ---------->DOF2<---------ANAC55(2)   aaacccatgttaattgcccaggaaactgaatacttgaagaagagtgatgacttgtggacacattgtatctcaatatccaaaagtgcttgaaatatgtaat  11996800                                                                            --------->ZAT14                    <---------AHL20(1)                                      <---------ZAT14                    --------->AHL20(1)                                     <----------DOF2                    <---------AHL20(2)                                     <---------DAG2                    --------->AHL20(2)                          --------->AHL20(2)     <---------At5g28300  <---------YAB1                        --------->YAB1               --------    <-----------GT1--------->AHL20(2)                           <---------AHL20(2)          ------->GAMYB ---->ICU4         <---------ATHB12 <---------MYB52(1)--------->ANAC46  <-----------GT1     --------- xxxxxxxxxsmallRNA(fl3) ----------->GT1            --------->ZAT14    <-----------GT1      --------->MYB46(3)   gtttttttactgttttgatcaataaattgttattttctgttattgaagttttcttcactcaaacatttatattttcactttactacaatttcaaccaaag  11996900  Previous    Next  AGI:  At3g30388.1    Description:  Encodes a ECA1 gametogenesis related family protein [pseudogene] Range:  from: 11996443    to: 11996787    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version