Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ZAT2                                                     <---------At4g35610                                                     <---------ZAT2                                               <-----------HVH21                                              <---------CCA1(2)                                            --------->YAB1                                   <-------                                       --------->MYB46(3)                            <---------ICU4                            ----------->GT1<---------ATHB12                    ------>ZmHOX2a(2) >ARR11(3)              --------->ARR14(2)------>MYB83 ----------->RAV1(1)   --------->ARR11(3) >ARR14(2)              <---------ARR14(2)------>MYB46(1)    ----------->GT1 <---------ARR11(3) -ARR14(2)     <---------AHL20(2)---------->DOF2     --------->At4g35610 <----------DOF2<-----------GT1   cttatccattcttatattttatatcatatatggtcaaaagaaccaatcgtatcacagcagcatttgttaatagaactttgatcttggtaattacaggttc  11911200                                                                        ------>ZmHOX2a(2)                                                                   <---------WOX13(1)                                                                 <---------ICU4                                                                 --------->ATHB51                                                                 --------->ATHB12                                           <-----------GT1       <--------ATHB1                                       <--------HAHB4            -------->HAHB4                                       --------->YAB1           --------->ICU4                                       <---------ICU4           <---------YAB1                                       <---------AHL20(2)       <---------ATHB51                                      <---------YAB1          <---------ICU4                       --------->ANAC58--------->ATHB51       --------->YAB1                       --------->ANAC58-------->HAHB4        <---------YAB1                       --------->ANAC46-------->ATHB1        --------->ICU4             <------ZmHOX2a(1)        <---------ATHB51     --------->YAB1           <---------TOE1(2)          --------->ICU4      <---------ATHB51 --GLK1(2)<-----------RAV1(2)   ----------->GT1           <---------ATHB12                   --------   tatattgaaatcgcaggagccaaaccagcaacttgggttaattattaacttcattcaccaataataataattgatcgtcaagactatttcggacacaaag  11911300                                                                              <---------ANAC58                                                                              <---------ANAC58                                                                            <---------ANAC46                                                                    ------->MYC3    ----------->TBP                        <----------DOF2                       --------->ANAC46<---------ANAC46                       <---------DAG2                     <-----------GT1<----------DOF2       ------                --------->At4g35610    --------->ATHB12<----------DOF2  <---------DAG2  --------->AHL20(2) -->DOF2        <---------At4g35610  ------->TEIL<----------DOF2    <-------MYC3    --------->AHL20(2)   acataaatacttgttttctgctctccctttccctaaatgtatcatttgatactttctctttttccctccatatgccttttgtgtgtataaatatatgtat  11911400                                       --------->ANAC55(2)                                       <---------ANAC55(2)                                       --------->ANAC46                                --------->ARR11(3)                                --------->ARR14(2)                                <-----------ARR10                                <---------ARR11(3)                               <---------ARR14(2)                         <---------AHL20(2)                           <----------DOF2                        --------->AHL20(2)                    <---------DAG2     --------->GLK1(2)                 ----------->GT1<---------ARR14(2)            <----------DOF2    --------->ARR14(2)          <---------------AGL15<---------CCA1(2)           <---------ALFIN1      <-----------ARR10 ->TEIL--------->ZAT18  <---------AHL20(2)              --------->ANAC46        <---------GLK1(2)   atgaataagttcacaaaaatagaaaattaaatcaaatcttcgcgtaatttctcatcaaactccacttttcttctttttaagagaatctagggtttcttct  11911500                      <---------MYB46(3)                                 --------->TOE2(2)                      ----------->GT1           --------->At4g35610      --------->TOE1(2)   --------                  <---------AtMYB61             <---------At4g35610--------->ANAC58         <--------               <----------DOF2             <----------DOF2         --------->ANAC58         ---------            <---------------AGL15    <---------ARR11(3)            --------->ANAC46         ---------        <----------DOF2              --------->ARR11(3) <----------DOF2 ----------->RAV1(2) ---------   actacttcttctttcttctttaggtggtcaaatttccaagttcttcttttagctctctcttttgtttccaagaaacctgagaagaatttttgtagatatg  11911600                           --------->HSFB2a(2)                          ------>ZmHOX2a(2)                          ----------->GT1                          ======================HOX2a_HOX2a                         =======================HOX2a_HOX2a                         <------ZmHOX2a(2)                                          ---------->DOF2                        <---------ARR14(2)                                   ----------->GT1                        --------->ARR14(2)       ----------->HVH21           <------MYB46(1)                      <---------DEAR3(2)       ================================================bZIP_DOF                    <---------LBD16            =======================bZIP_DOF  ---------->DOF2   ---                  <---------DEAR3(1)           --------->TGA1a               <------MYB83        <---    =============================HOX2a_HOX2a   <---------ANAC55(2)          --------->MYB46(2)   <---    <------ZmHOX2a(1) <---------MYB46(3)       --------->ANAC55(2)          --------->MYB59     -----    ============================HOX2a_HOX2a    --------->O2           ----------------->AGL1    <---- ->CCA1(2)    --------->At4g35610              <---------O2          --------->MYB52(1)        ------ -ARR14(2)    <---------At4g35610         <----------ID1            ================================= >ARR14(2)    --------->ZAT2             <------ZmHOX2a(1)          <------ZmHOX2a(1)  --------->At4g35610 >ARR11(3)    <---------ZAT2      <---------TOE2(3)                 ================================= >ARR11(1) <-------TEIL<------NtERF2 --------->CCA1(2)     ---------->DOF2<---------MYB52(1)   <-----   ggaagaggaagggttcagctacggcggatcgagaataagataaggagacaagtgacattttcaaagcgaaggaccggtttggtaaagaaagctcaagaga  11911700                                                                             <---------TOE1(2)        <---------ANAC55(2)                                                  --------->LBD16        --------->ANAC55(2)                                                 <-----------RAV1(2)   <---------ZAT6             <---------WOX13(1)                    <---------At4g35610 --->ZmHOX2a(2)              >>>>>>>>>ARR2                          --------->ZAT2 ------GLK1(1)              --------->ATHB12                        --------->At4g35610 ---ZmHOX2a(2)             <---------YAB1                           <---------ZAT2 ---->ARR11(3)           <----------DOF2                           <-----------RAV1(1) -----ARR11(3)          <---------ANAC46                <----------DOF2<---------MYB46(3) --->GLK1(1)  <---------At4g35610            ---------->DOF2       =====================RAV     <---- ====HOX2a_HOX2a        <---------ANAC58    ---------->DOF2    --------->ZAT18               ------>ZmHOX2a(1) ===HOX2a_HOX2a         <---------ANAC58  --------->LBD16      <---------ZAT14       ------->TEIL ----GLK1(1)  --------->At4g35610      <-----------------AGL1  --------->ZAT14      <---------CCA1(2)   tctcagtgttatgtgatgctgaagttgctttgattgttttctcccccaaaggcaaactctttgagtactctgctggttccaggtttgaatctttcctaag  11911800            ------>MYB83            ------>MYB46(1)          <---------MYB59                                                        --------->DAG2       <-----------GT1                                                <---------------AGL15   <---------AHL20(2)              <-----------GT1                   <-----------------AGL1   --------->AHL20(2)     ------>ZmHOX2a(2)                          <-----------------AG  <---------AHL20(1)     <------ZmHOX2a(2)                           ----------------->AGL1  <---------AHL20(2)    <---------ARR11(3)                         ----------->HVH21 ----------->GT1  --------->AHL20(2)    --------->ARR11(3)   --------->ICU4    <XXXXXXXXXXXXXXXXXXXXMIR862-5P <------ -----At4g35610    <---------AHL20(2)    --------->TOE2(3)     <---------YAB1   ---------->DOF2   ctaattaatttaccaacttattttaagatcgcatatttatctacataaatattagcctatatttcatgtttgacatattgggaaaagtggtatatatagg  11911900                                                <---------AHL20(2)                                               --------->AHL20(2)                                               <---------AHL20(2)                                           --------->AHL20(2)                                           <---------AHL20(1)                                           --------->AHL20(1)                                           <---------AHL20(2)               --------->ATHB12        --------->AHL20(2)                                      ------         <------ZmHOX2a(1)             <---------AHL20(2)                                      <----- ---TOE2(3)  <---------WOX13(1)    ----------->GT1                                 XXXXXXXXXXXXXXXXXX   tttcacatagaggagattgatttgaaattggctgagattgtttaattaattaaatcagtttatagccaattttgtttagttcttccatctctaacttaga  11912000                                                                                 -------->HAHB4                                                                                 --------->ATHB51                                                                                 <--------ATHB1                                                 ----------->GT1                 <---------ICU4                                      <---------AHL20(2)                        <---------AHL20(2)   --------->YAB1--------->ATHB12--------->AHL20(2)                             <---------ATHB51  <------ZmHOX2a(2)   <-----------GT1--------->AHL20(2)                         --------->AHL20(2) <---------ARR11(3)<---------------AtSPL8   ---------->DOF2                     --------->ICU4 --------->ARR11(3)--------------->AtSPL8 --------->YAB1        <---------YAB1  <---------YAB1 --->HSFB2a(2)   <--------ATHB1  <---------AHL20(1)   <---------WOX13(1)      --------->YAB1       -- ----HSFB2a(2)  --------->ICU4   --------->AHL20(1)   <---------YAB1        --------->AHL20(2)     <- XXX>MIR853     <---------YAB1   <---------ARR11(3)--------->ICU4   ------>ZmHOX2a(2)         -------   gaagatcataaaaaatgaatgattgtacaatactatatattaaatcaaaagaagtgattaatagagatgatcgcatcaaaaaataattgtgagacataac  11912100  Previous    Next  AGI:  At3g30260.1    Description:  MADS-box protein (AGL79). similar to CAL (CAULIFLOWER), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G26310.1); similar to MADS5 protein [Betula pendula] (GB:CAA67969.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 11911598    to: 11915359    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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