Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                   ------>ZmHOX2a(1)                            -----                                                  --------->TOE2(3)                             -----                                               --------->GLK1(2)                           <---------ARR14(2)    <---------CCA1(2)                          <---------ARR11(3)                          --------->ARR14(2) ---->NtERF2                       ----------------->AGL1                                *TSS   ----- ------>ANAC58                    >>>>>>>>>>>>>>>>>LFY                                 <---------At4g35610 ------>ANAC58               --------->ATHB12  --------->ARR14(2)                  <-----------HVH21 ----->SPL7               --------->TOE2(3)    <---------ARR14(2)       <<<<<<<<<<<<<<<<<LFY <------- -LBD16                 <---------TOE2(3) ----------->GT1     --------->YAB1       ------------------   acgcccataacttcaaataacctataaacgttgatttgccaatgtagaaaatcctaaactccaatagtaccatagaacaatggaatgtcagcctatacac  11848100         <---------KAN4(1)        <---------YAB1      <---------ICU4     --------->ICU4     <---------YAB1   <---------ICU4   --------->YAB1                                            <-----------HVH21  --------->ICU4                                            <------MYB83  <---------ATHB12                              <-----------GT1 ------>At5g28300                       --------->YAB1      <------MYB46(1) ---->ANAC58                            <---------ICU4    <---------WOX13(1) ---->ANAC46    ------------>CBF       --------->ICU4    <------------CBF ---->ANAC58   <-----------HVH21       <---------ATHB12 --------->ATHB12 --REM1(2)--------->KAN4(2)          --------->YAB1    <---------YAB1  <<<<<<<<<MYB1   ------->GAMYB ----->TaNAC69(2)                --------->ZAT6 --------->YAB1         <<<<<<<<<MYB2  --------->MYB46(3)   ggtaatcatgattattctgtcaattccttcgctcaactctaatcatggaatcaccatatgattggtcatagcagttagagccatggtaacagccttgatc  11848200                        -------->ATHB1                        --------->ATHB12                        <---------ICU4                        <--------ATHB1                       <---------ATHB51                       --------->ICU4                       <---------YAB1                       <---------ATHB12                    ------------>ATHB5                  --------->TOE2(3)              <----------DOF2            --------->At4g35610            <---------At4g35610        <---------ARR14(2)     ------>ZmHOX2a(2)        --------->ARR11(3)    <---------At4g35610        --------->ARR14(2)    --------->At4g35610        <---------ARR11(3)<---------WOX13(1)                                 XXXXXXXXXXXXXXXXXXXXXXX>MIR829.1   ------>ZmHOX2a(1)<<<<<<<<<WRKY18       >>>>>>>>>>WRKY26         ---------->DOF2             <-----   ===================================HOX2a_HOX2a     ---------->DOF2       XXXXXXXXXXXXXXXXXXXX>MIR845A   aagtcctgaaggtctgctttcgtcaatgattgatctgccatagttgatcaagcttgaaaagagactatagaaagcatgctctgataccacttgatgcagt  11848300                                                                                     ----------->RAV1(1)                                                                            ----------->TBP                                                                          <----------DOF2                 --------->ANAC58                                         --------->TOE2(3) <---------GLK1(1)                               --------->ANAC58         --------->TOE1(3) --GAMYB         --------->ANAC58                --------->ANAC58----------->GT1 --------------------   tggaatcccttggaatagcaagcactatgcctagatagaaatcaagttcggaagcatcaaacttgaagggttgaaactttaaaaatccaccagattagag  11848400                                       <---------HSFC1(1)                                 <---------ANAC58                                 <---------ANAC55(2)                 <---------AHL20(2)    --------->HSFB2a(2)                --------->AHL20(2)     <---------HSFB2a(2)           <----------DOF2       <---------ANAC58           <---------DAG2 ----------->GT1                              ----------->GT1  --------->GLK1(2)       --------->YAB1                               *TSS  --------->ARR11(3)     ----------->GT1----------->GT1         ----------->TBP --------->AtMYB61  <---------ARR11(3)     <---------YAB1--------->HSFC1(1)     --------------->AGL15 --------->RVE1(1)  --------->YAB1<-------MYC3                <---------------AGL15     --------->AHL20(2) ---->ANAC81    <---------AHL20(2)------->MYC3               ----------------->AGL3   --------->TOE2(3)   aaaaaatctatgactttattaattagaatgataaaacgtgtctagaaaataacttagggtctctctatatatagagtagaaaccaaaacataaattagaa  11848500                                         <---------AHL20(2)                                         --------->AHL20(2)                                         --------->AHL20(1)               <---------STY1(1)                                        --------->AHL20(2)                --------->STY1(1)                               ----------->GT1                     --------->ANAC46             -----       ---------->DOF2       <------ZmHOX2a(1)                     --------->REM1(1)  <---------ATHB12    --------->AtLEC2       <---------TOE2(3) --------->AHL20(2)  ------>ZmHOX2a(1)  --------->WOX13(1)   aactctatgcaaagtagtaagtttgaaataaggaagtataaaaaaaattaaaactgctaaatctctcctacatcacctagggaagtcaatcgatgaaaca  11848600                                                                                      --------->ANAC58                                                                              ------>ZmHOX2a(2)                                                                             <------ZmHOX2a(2)                                                                            <---------ARR11(3)                                                                            <---------AGP1                                                                            --------->ARR11(3)                ------>ZmHOX2a(1)                                          <---------CCA1(2)               --------->TOE2(3)       --------->YAB1                  --------->TOE2(3)           --------->HSFC1(2)   --------->ANAC58                     <---------ARR11(3)             -           --------->HSFB2a(1)  --------->ANAC58            <---------ANAC55(2)       --------->ANAC58           <---------HSFB2a(1) <-------PIF5       --------->YAB1     --------->ARR11(3)            -- ----->DOF2<---------HSFC1(2)  ------->PIF5      <---------ATHB12 --------->AHL20(2)---------->DOF2<-   aagttagtgaagaagctccttaatagtctaccacgagccaagtatattcaaatcatagcatcacttgaataaatcttagatctcaacaaagccatttcaa  11848700                                  --------->ARR14(2)                                  <---------ARR14(2)                               <---------ANAC58                               <---------ANAC46                        <---------ANAC46                                     <----------DOF2               --------->YAB1  <---------ANAC58  <------MYB83                <---------DAG2       <----------ID1   <---------TOE1(1)        <------MYB46(1)           ------>MYB46(1)     <---------------AtSPL8 <------ZmHOX2a(1)    ----------->GT1           ------>MYB83 -------->CCA1(2)       <---------TOE2(1)       --------->MYB59          <---------MYB59 ------->ARR11(3)    --------->TOE1(2)        <------ZmHOX2a(1)       --------->GLK1(1) --------ARR11(3)    --------->TOE2(2) ----------->HVH21       <----------DOF2                 <-----   agatatagtgggacgaataaaaacttacgaggagcgtatacttgacgaggaaggtaacattgagactttgggaaacctacttttctcaagtatgaattca  11848800                           <---------ARR14(2)                           --------->ARR14(2)                     ----------->HVH21                   --------->MYB52(1)                     --------->ALFIN1                 ---------->DOF2              ---------->DOF2<-------TEIL       ---------->DOF2           --------->ALFIN1 ----------  --------->CCA1(2) --------->LBD16       <------ZmHOX2a(2)               <-----------RAV1(1) --------->ARR14(2)<---------ANAC58      --------->ARR11(3)       -------->P <---------ANAC46 <------ <---------ARR14(2)<---------ANAC58      <---------ARR11(3)   <-----------ARR10<---------ANAC46 ------GT1---------->DOF2 --------->At4g35610 <------ZmHOX2a(2)<------ZmHOX2a(2)          -----------   caagataggctacaaagaaagccgtggcagattcaacatacaagatcgatcaaaggaaaagacggatcaacccgatgtgttgtgtttttgatgtgttaaa  11848900                                                                                            <-------TEIL                                                                                   <------ZmHOX2a(2)                                                                                   ==================                                                                                   <---------GLK1(1)                                                                                   --------->GLK1(1)                                                                                  <-----------ARR10                                                                                  <---------AGP1                                                                                  <---------ARR14(2)                                                                                  --------->ARR14(2)                                                                                  <---------ARR11(3)                                                                                  --------->ARR11(3)                     <---------ANAC58                                            <---------CCA1(2)                     <---------ANAC58                                            <---------ARR14(1)                --------->ALFIN1                                                --------->LBD16              <---------ANAC58                                                <---------LBD16<-------              <---------ANAC46                                              <---------ARR14(2)              <---------ANAC58                                         --------->GLK1(2)   --------->AtLEC2          <---------ANAC58                                            <---------GLK1(2) <---------REM1(2) ->GT1    <---------ANAC58          --------->AHL20(2)              --------->ANAC58================= ---AHL20(2) <---------DEAR3(1)   --------->TOE2(3)    <---------TOE2(3)    --------->ARR14(2)    --- >GT1 <----------DOF2<---------ANAC46          ----------->GT1      --------->ANAC58------>ZmHOX2a(2)   atgggacactttgcttcggtgtgtcttgagagaaaacataaatttcaagaggtaaacaaggttgaaacacaagaatcggatgcggatctctacatgcatg  11849000  Previous    Next  AGI:  At3g30211.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.5e-83 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 11844031    to: 11848089    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g30212.1    Description:  transposable element gene. copia-like retrotransposon family, has a 4.6e-19 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family) Range:  from: 11848471    to: 11849907    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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