Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------AHL20(1)                 <---------AHL20(2)                 --------->AHL20(1)                <---------AHL20(2)                                                           <-------                --------->YAB1                                                               --------        ----------->GT1          >>>>>>>>>>>>>>>>>LFY                                    <---------At4g35610 ----AHL20(2)   --------->AHL20(2)                           ------->TEIL       <---------GLK1(2)<---   ttttgaaagaatgtaaaattatattcaacaaaaaaaaccattgtttacaataaatgtaacatgaatttagagagttcaaacagagtctgagagatgatca  11721600                                                                        --------->At4g35610                                                                        <---------At4g35610                                                                       --------->ALFIN1                                                                      --------->ZAT14                                   <---------ALFIN1                   <---------ZAT14                                  <---------ZAT18                     --------->ZAT18     --------->MYB52(1)         <---------At4g35610                  --------->ALFIN1    ------>ZmHOX2a(1)           --------->At4g35610                <---------TGA1a   <---------MYB59              ------>NtERF2                    <---------ZAT14 --ARR11(3)                  --------->ZAT14   <----------DOF2--------->At4g35610 ->ARR11(3)                  <---------ZAT14   ==============================bZIP_DOF ------ANAC55(2)             <---------At4g35610         <---------ALFIN1    ------->TEIL          --   tgtgtcctaactgcgagtttgaaaccaatactgcagcccaccttgaagtcttttgttccccatcttctgaagtgtgctgaatctattccgaatgtttttg  11721700                           --------->GLK1(1)                          --------->ARR14(2)                          <---------ARR14(2)                         <------NtERF2                        --------->LBD16           ------>MYB83                        <---------RAP2.6(3)       -------->P             --------->At4g35610                  ------>MYB46(1)             <---------At4g35610                --------->DEAR3(1)            ------->TEIL          <---------MYB52(1)                   --------->ATERF1(1)         <---------YAB1      --------------------->WRI1               <------NtERF2   --------->ANAC46    --------->At4g35610--------->RAP2.6(2)    ------>NtERF2    --------->ANAC58 ------->WOX13(1)     <---------LBD16      <-----------HVH21   --------->ANAC58  ---------->DOF2   tcaatgagcttagttagcttcgaagccggaattgcaggctcaccatgtcgcctaccatttctctctcgccatagactatgaatcaaagcttggaatgtat  11721800                               <---------O2                         <---------ANAC46                 <---------At4g35610                    --------->CCA1(2)                     --------->At4g35610                   <---------ARR14(2)               --------->ATHB12                   --------->ARR11(1)              --------->ICU4                   --------->ARR11(3)            ----------->GT1           --------->ARR14(2)                 ----------->ARR10              <------ZmHOX2a(1)          <---------ARR14(2) =======    ----------->GT1<---------ARR11(3)       --------->ALFIN1  <---------ALFIN1                <------ --------->MYB52(1)--------->ARR14(2) <XXXXXXXXXXXXXXXXXXXXMIR847  --------->ANAC46           ------>ZmHOX2a(1)   accgaagggtgaaaacatggagatatggctgagacgagtcaagaaggtgaggagtgattaagctccaactcgaaacgtttctgccattgagaagtccttt  11721900                                                                                             <-------                                                                                             <-------                                                                                            ---------                                                                    --------->O2           *TSS -----                                                                    --------->ANAC46       <---------AHL20(2)                                                      --------->TGA1a<-----------HVH21 <---------AHL20(2)                                              <---------AtMYB61<---------ARR14(2)      --------->AHL20(2)                                              --------->ALFIN1 --------->ARR14(2)     <---------AHL20(1)        <------ZmHOX2a(2)               --------->DAG2<---------ANAC58                --------->AHL20(1)  --------->DAG2                       ---------->DOF2--------->O2 ------>ZmHOX2a(1)  --------->AHL20(2) ---------->DOF2                       =========================bZIP_DOF              <---------AHL20(2) ==============HOX2a_HOX2a       --------->ANAC58     <---------ANAC58          --------->YAB1------- ----DOF2<-----------------AGL3  --------->ANAC58     ===============================================   tgctaaagcgatccaaatttgagaagaatagggacacgagaaaaagaggtggtctcgcgtctccagttcctcgtcgcagaaaacataatttatttaaagt  11722000                                                                                          -------->HAHB4                                                                                          <---------AHL20(2)      <---------YAB1                                                                      -------->ATHB1    <---------AHL20(2)                                                                    <---------ICU4   --------->ICU4                                                                         --------->ATHB51   --------->AHL20(2)                                                                    <---------ATHB51 <---------ICU4                         --------->AHL20(2)                               <---------YAB1 --TOE2(3)             <---------AHL20(2)   <-----------GT1                        ----------->GT1 --TOE1(3)             --------->AHL20(2)  --------->ICU4         --------->AHL20(2)     --------->ICU4 ->DOF2 <---------AHL20(2)   --------->AHL20(2)                   <---------AHL20(2)--------->TOE2(3) ---->AHL20(2) <----------DOF2        ----------->GT1      ----------->GT1 ----------->GT1--------->ATHB12 ---->GT1     --------->TOE2(3)     ---------->DOF2       --------->AHL20(1)      --------->AHL20(1) ==bZIP_DOF<-----------GT1 <---------AHL20(2) <---------YAB1--------->TOE2(3)<---------YAB1<---------   taatatttattattttcctttatatttattttaaaatagaaagtaattactattttcaaatatgttaattacttagatgataaatatgttaattattgat  11722100                      <----------DOF2                     <---------------AGL15                     --------------->AGL15                   ------>NtERF2                  --------->ANAC58                  --------->ANAC58                 --------->ATERF1(1)                <---------TGA2(2)                <---------ATERF1(1)                                                  <------ZmHOX2a(2)               ----------->TGA1                                                     --------->ARR11(3)               ----------->HVH21                                                    <---------ARR11(3)             <------MYB83   --------->ANAC58                                      --------->ICU4             <------MYB46(1)--------->ANAC58                              ------->TEIL      <------ZmHOX2a(2)            <---------MYB46(3)                                         <---------ATHB12    <--------- <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <---------GLK1(1)  --------->WRKY18(1) ---CBF  --------->ATHB12 ---------->DOF2   <----------DOF2 --------->GLK1(1) <-----------HVH21------   atggctaatctcgattggtgacgcctttaaaagcaaataacttcaacttttatttagtatagatttccttctaatgaaccggtcaagatcatcgatcaca  11722200                                                        <---------GLK1(1)                                                        --------->GLK1(1)                                                       <---------ARR14(2)           <---------YAB1  -                                                      <------ZmHOX2a(1)             --------->AHL20(2)                                                <---------ANAC58                    <---------AHL20(2)                                                <---------ANAC58                   <---------AHL20(2)          ------>ZmHOX2a(2)                   <---------YAB1                       --------->AHL20(2)        <---------ARR11(3)                <---------WOX13(1)        <---------MYB46(3)              <   <----------DOF2                     --------->WRKY38(1)<-----------GT1  --------->ATHB12        <- --HVH21--------->ARR11(3)             --------->WRKY12--------->ARR14(2) --------->ICU4           -- --->ANAC46   <---------DEAR3(2)  ---------->DOF2   <---------TOE2(3)     <---------YAB1      -------   gaacgctttagatcgtcgtttcatagccatggtatcaaaagttgactgatgcttgaggatttccctctcgttgttgattattgattttaattagataaaa  11722300                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                                   <---------ICU4                              ----------->RAV1(1)                                 --------->ICU4                             <----------ID1                             --------->YAB1 --------->YAB1                       <---------YAB1                                  <---------AHL20(2)                     <---------ICU4                    <-------TEIL    --------->AHL20(2)                     --------->ATHB51                  ------->TEIL  <----------DOF2  --------->ZAT6 -------->ARR11(3)   <--------HAHB4                --------------->AtSPL8      <---------AHL20(2) ---------ARR11(3)  <---------YAB1                 --------------->AtSPL3    --------->ANAC55(2) --------GLK1(1)    --------->ICU4  <---------------AtSPL3  <----------DOF2  ----------->GT1 ------->GLK1(1) <---------YAB1 --------->MYB46(3) <---------------AtSPL8    <---------ANAC55(2)    - --->DOF2  <-----------GT1<---------TOE2(3)        <---------------AtSPL3 --------->ICU4  <---------ICU4   gaaatcttctattaaacttctcattattaaggcaacaaatagtacttcccttatatgtacgtcttttattcctttaattatgtaattaatactaatttca  11722400                            <-----------HVH21                                    --------->ANAC58                          <-------MYC3                                           --------->ANAC58                          <-------MYC2                                           --------->ANAC46                          ------->MYC3                                           --------->bZIP60(2)                          ------->MYC2                                          <---------LBD16                         --------->TGA1a                                    ------>NtERF2                         <---------TGA1a                                    <---------ATERF1(1)                         =================================================bZIP_DOF------------>AtMYB77                         --------->ANAC55(2)                                --------->ORA47(1)                         <---------O2                                      --------->DEAR3(1)                         <---------ANAC58                                  ----------->HVH21                         <---------ANAC55(2)         <<<<<<<<<TBF1        --------->ATERF1(1)                         --------->O2   --------->TOE2(3)                 --------->DEAR3(2)                         <---------ANAC58       <---------ANAC58         --------->At4g35610                         <---------bZIP60(2)    <---------ANAC58         <---------At4g35610  <------      --------->AHL20(2) <---------ANAC46  --------->MYB52(1)  <----------DOF2 <---------ALFIN1 ----------------------->ANAC81         --------->TOE1(3)  <---------MYB52(1) --------->MYB46(3)  <--   aaaatgaataaaaaaaaaaaaaaactcacgtgtcattagaaaccctaatggcttcttcttcgtttctttgtttgtagccgaccacggcagtttcttcttt  11722500  Previous    Next  AGI:  At3g29798.1    Description:  transposable element gene. pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 4.0e-08 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus} Range:  from: 11721607    to: 11721991    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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