Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->At4g35610                                       <----                            --------->AHL20(2)        ----------->GT1                           -----                            <---------AHL20(2)      <-------MYC3          <---------At4g35610 -------                       <---------AHL20(2)           ------->MYC3    ------>ZmHOX2a(1)    --------->YAB1               <----------DOF2        <---------At4g35610       <---------ZAT18         <---------YAB1         <-----------GT1<---------AHL20(2) ---------->DOF2      --------->ZAT18   ---------->DOF2   tttttttgttttttcttcttttttttttatttatatagagagcagaaaagaacatgtggtttcaagtgtcctctccagcacatagaaagtatcatcactc  11699700                           --------->AHL20(2)                       <---------ANAC55(2)                 <---------ARR11(3)                                            <-------TEIL  <-------                 --------->ARR11(3)                                           --------->ARR14(1)                <------ZmHOX2a(1)                                 ----------->GT1          ----------              <---------TOE2(3)       <---------YAB1      --------->ATHB12   <---------ARR14(2) -----ZAT14   <---------TOE1(3)  ----------->GT1          <---------AHL20(2) --------->ARR11(1) ---->ZAT14  --------->MYB52(1)  --------->ANAC55(2)     --------->ICU4      --------->ARR14(2) -->ANAC46 --------->TOE2(3)     <---------ANAC55(2)     --------->AHL20(2)  <---------GLK1(2)   cagttaccaataacctaaggatattacataaaaataggtgataaatgtggaatagtgtatttattagactgtatatatagattcggtttagaccggttaa  11699800                                        <---------ZAT14                                        --------->ZAT14                                       <---------ZAT6                                     <---------ANAC46                                <------MYB83                            <<<<<<<<<RAP2.2 ----------->GT1                  ------->TEIL  <------MYB46(1) --MYB52(1)     <<<<<<<<<EIN3 <---------WOX13(1)  <---------AHL20(2) ->GT1    <-----------GT1  <---------TOE2(3)<---------ANAC46                <---------YAB1   cttagattgtatttacaatgtatatggtttagattggtttagtgtagagtatataaacatccaattgtacattctgtttcgattgagaaatatagaaaac  11699900                <-------TEIL                                    <------MYB46(1)       <---------ICU4          <----------DOF2                                       <------MYB83   --------->YAB1     <---------ARR11(3)                                       <---------MYB52(1) ------------>CBF     --------->ARR11(3)      --------->YAB1                   <--------P  ------------>CBF    <---------CCA1(2)       <---------ATHB12            <-----------GT1  <-----------GT1   tttcacatatctctttgattcatgttctctatcatggtatcagagcattttctgcgtttttccagttggttttattttcaatcttcaattcttactcagt  11700000                                        --------->LBD16                                       --------->ANAC46                                      --------->LBD16                                      <---------LBD16                                  --------->GLK1(2)                                     <---------ANAC58                     ----------->GT1                  <----------DOF2    <---------ANAC58    *TSS            --------->ALFIN1      ------                <------------------------ANAC81     ----------->GT1   --------->DAG2   <-----------ARR10          <-----------GT1  <------------CBF <------ZmHOX2a(2)       ---------->DOF2   <---------GLK1(2)   ttcttcgattattcacttctctttacatcgattgttcttccgcgcgatcgattttggtgaaaatagagaacaaaggtgggaaaatgaagaatctcagtga  11700100                                                                         --------->At4g35610                                                                    <---------ANAC58                                                         <------ZmHOX2a(2)                        <--                                                        --------->ARR14(3)                       ----                                                        <---------ARR11(3)                      <----                                                        --------->ARR11(3)                      -----                  <-----------RAV1(1)                   <---------ARR14(2)                      -----             <---------MYB46(3)                  --------->At4g35610<---------ANAC58           ------          <---------MYB46(3)                   <---------WOX13(1)   <---------ANAC46           ------   ----------->HVH21                <---------CCA1(2)   --------->ARR14(2)                     <-----   ----------->TGA1               --------->ANAC55(1)   <---------ARR14(3)                     <-----   ------>ZmHOX2a(1)   <---------ANAC58      <---------ICU4 ------>ZmHOX2a(1)     --------->MYB46(3) =============================RAV --------->ANAC46    ----------->ARR10  <---------At4g35610  ------- ----------->RAV1(2)   <---------ANAC58     <---------YAB1------>ZmHOX2a(2)    --------->MYB46(3)---- --->YAB1<---------AtMYB61 --------->ARR14(2)--------->ATHB12      <-----------------------TaNAC69(2)   tactcctgacgatggtggttttgttgctcgatctactcgtaactcgatgattgctgaagatcctgaagttgcgagagctcaacaacaactcaatcgaaga  11700200   --------->HSFC1(2)   <---------HSFC1(2)   --------->HSFB2a(1)   <---------HSFB2a(1) -----TEIL ----->ARR14(1) -----ARR14(2) ---->ARR11(1)        ------>ZmHOX2a(2) ---->ARR14(2)      <---------ARR14(2)                                                           <--- --->HSFC1(2)   --------->LBD16                                                             --------- --->HSFB2a(1) <---------ANAC46                      <---------ATHB12                      <---------YAB1 ----HSFB2a(1) <---------ANAC58                     --------->ANAC58                      <---------TOE2(3) ----HSFC1(2)  <---------ANAC58                <---------ETT(2)                           <---------TOE1(3) ---->ARR10   <---------DEAR3(1)  --------->ZAT14   --------->ANAC58               --------->LBD16--- ----->CCA1(2)<-------TEIL        <---------ZAT14  --------->WOX13(1) --------->YAB1     <-----------GT1   ttcgaaacttctgaggtccgtggatcgatgttgaagaacactgactctttcgacaatcaattggttctccattcatagaatcatccaggtttaacgattg  11700300                                 <------MYB46(1)                                <---------AtMYB61                                <---------MYB46(3)                       --------->ZAT2                               <---------MYB52(1)                        --------->STY1(2)      <----                          ----------->RAV1(1)                           --------->ANAC58      <------                       --------->YAB1                                   --------->ANAC46     <-------     <---------GLK1(2) <-----------GT1                                  --------->ANAC58     ======== ------CCA1(2)      <---------ICU4                              ---------->DOF2         <---------WOX13(1) >ATHB12           --------->ICU4<------MYB83 --------->YAB1  <-------TEIL        --------->MYB52(2) ---->TEIL    <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->At4g35610<---------STY1(2)   ------>ZmHOX2a(2)   tatctcatattcttgatggaactaattacaacagttggtcgattgcgatgaaaattagcttagatgcaaagaacaagctaggcttagttgatggatcgtt  11700400                                                                                             ------>ZmHOX2a(2)                                                                                             ========                                                                                            <------ZmHOX2a(2)                                                                                            =========                           <-----------------AGL2                                          <---------ARR11(3)                           <-----------------AGL1                                          <---------ARR14(2)                --------->ATHB12                                                           --------->ARR14(2)             <------ZmHOX2a(1)       <---------ANAC46                                      --------->AGP1   --------->ARR11(3)    --------->ARR14(2)                                   <---------ANAC58   <---------ARR11(3)    <---------ARR14(2)                            <---------YAB1      --------->ARR11(3) -----MYB46(3) <---------YAB1    ------->MYC3                      <---------GLK1(2)      <---------GLK1(1) -GAMYB----------->RAV1(2) <---------LBD16                   --------->ICU4   <---------ANAC58   ---- --MYB46(3)<---------TOE2(3) --------->LBD16<-------TEIL     <---------ATHB12 <---------ANAC46  <---- ===================HOX2a_HOX2a  <-------MYC3         ----------->GT1 --------->TOE2(3)   --------->GLK1(1)   gttgagaccttctgaggatgatttgagtttccgcatatggagtagatgcaatagtatggtgaaatcatggattcttaatgtcgtgaacaaggagatctat  11700500                  <------ZmHOX2a(1)                    <-------TEIL                  ===============================HOX2a_HOX2a ========================HOX2a_HOX2a      ------>ZmHOX2a(2)         --------->At4g35610 ========================HOX2a_HOX2a    --------->ARR11(3)<---------TOE2(3)--------->ANAC58 ----->YAB1    --------->YAB1<---------GLK1(1) <-----------GT1      <---------At4g35610             < -----YAB1     <---------LBD16          <---------ARR11(3)<---------TOE1(3)--------->ANAC58        <-   gatagcatattgtattatcaggatgctatggaaatgtgggatgatctattcactaggttcaaggttactaatctgccaaggaagtatcaacttgaacagg  11700600  Previous    Next  AGI:  At3g29792.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.7e-243 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 11700057    to: 11704562    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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