Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                                                   <x                                                                                                   <x                                                                                                  ---                                                                                               <xxxxx                           --------->ANAC58                          ================================                           --------->ANAC58                          ---------->DOF2           <xxxxx --------->ZAT2        --------->ANAC58                <---------GLK1(2) <---------ANAC58     ------- <---------ZAT2<---------WOX13(1)                  <---------At4g35610   <---------ANAC58  ========== <---------STY1(2)     --------->ANAC46   <---------AHL20(2)   <---------At4g35610         <--------- --------->STY1(2)     --------->ANAC58   --------->AHL20(2)   --------->At4g35610        <---------DAG2   accagctagttaacttgatggatttaagcaagaaaacgtagaatttatattcgagcagattgtttagctaaaaaagcttgggtttgaaattgccttttct  11673800                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <---------ARR14(2)               --------->ARR14(2)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------MYB46(3)             <---------DEAR3(2)            <---------DEAR3(1)           <xxxxxxxxxxxxxxxxsmallRNA(i)          <-------PIF5          <-----------HVH21          ------->PIF5          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          xxxxxxxxxxxxxxxxx>smallRNA(se3)         --------->ANAC58         --------->ANAC46         ===============================bZIP_DOF         --------->O2         ===============================bZIP_DOF         --------->ANAC58         <---------TGA1a         <---------O2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              --------->AHL20(2)       <xxxxxxxxxxxxxxxxsmallRNA(i)                        <---------AHL20(2)   ---------->DOF2--------->TOE2(3)                       <---------AHL20(2)   ================bZIP_DOF                               --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <---------AHL20(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  --------->ATHB51 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <---------ICU4 xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <--------ATHB1 ------------>AGL15------>ZmHOX2a(1)                  <---------ATHB12 xxxxxxxxxxxxxxxxxxsmallRNA(s2)                <----------DOF2  <---------AHL20(2) ==================bZIP_DOF         <---------ANAC46  <---------ATHB51 xxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             ---- --->ARF1--------->TGA1a<-----------GT1       <---------ANAC58 --------->YAB1               <-------- ==================bZIP_DOF  <----------DOF2  <---------ANAC58 --------->AHL20(2)           --------- -DOF2 <xxxxxxxxxxxxxxxxsmallRNA(s)<---------LBD16    --------->ICU4                      ---------->DOF2   cccatataagcacgtcggttcctaaataactctttctagcggagagtgtctttccaataatttaataaaaatggtgtttgtatatcaaaaaaaaaagaaa  11673900                                                           <---------AHL20(2)                  ------                                                       --------->AHL20(1)                --------->ANAC58                                                       --------->AHL20(2)        <---------AHL20(2)                                          <---------AHL20(2)           ------->TEIL      --------->ANAC58                                          --------->AHL20(2)    ------------>CBF<---------AHL20(2)<-- ------>DOF2                        ------------>CBF   <---------AHL20(2)   <---------YAB1----------- --ID1             <---------HSFB2a(1)   --------->AHL20(2)--------->AHL20(2)   --------->AHL20(2)--- -->GT1  ------>ZmHOX2a(2)         <-----------GT1    --------->AHL20(2)    <---------AHL20(2)<------   aaagaaactgatcgagatagaacgtttgcagttttataaacaatttaaaaaacaaaaaaaattaaactcaatgtattttttattaattcacaaacaataa  11674000                                                                                           --------->ANAC58                                                                                           --------->ANAC46                                                                                  --------->AHL20(2)                                                                                  --------->YAB1                                                                                  <---------ICU4                                                                                  --------->ATHB51                                                                                  <--------HAHB4                                                                                  -------->ATHB1                                                                                 <---------ATHB12                                                                                 <---------ATHB51                                                                                 --------->ICU4                                                                                 <---------YAB1                                           <---------At4g35610               --------->LBD16     <---------TOE1(2)--------->ANAC46     ------>NtERF2                     ------------>CBF   --------->TOE1(2)  --------->ANAC58    --------->DEAR3(1)                ------->GAMYB  --------->ANAC58  --------->YAB1      --------->ANAC58 --------->ANAC46                     --------->RAP2.6(2)  --------->ATHB12    --------->ANAC55(1)--------->RAP2.3(1)                --------->ANAC58 --->YAB1      <---------ICU4       ------>MYB46(1)      <------------CBF   --------->ANAC46 -------AHL20(2)   <---------REM1(2)-------->P        <---------AHL20(2)    --------->TOE2(3)    ---- ->CBF <------ZmHOX2a(1)            ------>MYB83    <---------AHL20(2)      --------->ANAC58   ------ ------>AHL20(2)  <-----------GT1 <---------MYB59 ----------->TBP          --------->MYB46(3)  ------ ---ATHB51------>ZmHOX2a(2) --------->YAB1--------->ANAC46                -------->P<---------YAB1   taaatcataggatcgaatatttacacggtatcaaaacctactcgccgctactatataaaaattgaagtcaaatatcaaccgcaattattaaaccagcaag  11674100                                    <---------TOE2(3)                                  <---------AHL20(2)      --------->YAB1             --------->AHL20(2)  <--------ATHB1                 <---------AHL20(2)  <---------ICU4              --------->AHL20(1)  --------->ATHB51            <---------AHL20(2) <---------ATHB12             --------->AHL20(2)                       <---------ARR11(3) <---------ATHB51             <---------AHL20(1)                       --------->ARR11(3) --------->ICU4              <---------AHL20(2)                    <-----------GT1 -------->CBF           --------->TOE2(3)    --------->MYB52(1)   <---------YAB1 --->ANAC58            --------->YAB1   <-----------GT1       <-------GAMYB --->ANAC58 --------->TOE2(3)--------->AHL20(2)              ----------->GT1     ------>ZmHOX2a(1)---   acaataattcataaacttaatataaacataaataaattaatgttacacaacgatatatggtgagggttattactatcttcttcctctcaaaacacatctc  11674200                                                                                        --------->LBD16                                                                                       --------->ANAC55(2)                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                                       --------->ANAC46                                                                                       <---------HSFB2a(2)                                                                                       --------->HSFB2a(2)                                                                                  <---------HSFC1(2)                                                                                  --------->HSFC1(2)                                                        --------->ZAT2         <------NtERF2    -----                                                        --------->At4g35610    --------->At5g28300         <----------DOF2                   ------>ZmHOX2a(1)                  --------->LBD16--------  --------->TOE1(3)              <-----------GT1        <---------ZAT2    ------>ZmHOX2a(1)  ------->GAMYB  --------->TOE2(3)            <-----------GT1 <<<<<<<<<TBF1        ------>ZmHOX2a(1) <---------LBD16 --->ZmHOX2a(1)  ----------->HVH21   ------>ZmHOX2a(1)  <---------At4g35610 <---------LBD16 ---------   ctaaccttaagctttagacatgaccaaaacatttttctccttctccttcttcttcaccagctctcttctccttctcctcgcggcaacttccgcaaccgca  11674300                                                                             <---------MYB46(3)                              --------->MYB52(1)                       --------->ANAC58                             ----------->HVH21                         --------->RAP2.6(2)                           --------->CCA1(2)------>ZmHOX2a(1)          --------->ANAC46                          --------->ARR11(3)--------->HSFB2a(2)        --------->ANAC58                          <---------ARR11(3)<---------HSFB2a(2)        ------->GAMYB                    <-------GAMYB  <---------ARR14(2)                <---------At5g28300            <                    <---------ANAC58        --------->LBD16         --------->ARR14(2)    <------ZmHOX2a(1)   --------->ANAC46 <---------ANAC58       <---------LBD16          <---------ARR14(2) <------ZmHOX2a(1) -->TEIL----------->GT1 ----------->ARR10 ----------->RAV1(2)  ----------->GT1       --------->ALFIN1 ->RAP2.6(2)       <------MYB83 <---------ANAC46       <---------MYB52(1) --------->MYB52(1)    <---- >MYB46(3)         <------MYB46(1) --------->ARR14(2) <-------GAMYB <-----------GT1 <------ZmHOX2a(1)   tctacagggaatgttactagtgggttgagatatgacggatgtgctcctggagacaccgttggagaatgtataaccgcaacggttgaggaggaggatgagg  11674400                       --------->ARR14(2)                       <---------GLK1(2)                       <---------ARR14(2)                      <------NtERF2                    <---------ANAC46                   <---------LBD16                  --------->LBD16                 <---------RAP2.6(2)                <---------LBD16                --------->SPL7           <------NtERF2           <---------MYB52(1)                  --------->ANAC58       --------->At4g35610    <-------           <-------GAMYB         ---------->DOF2              --------->HSFB2a(2) <---------AtMYB61         <---------DEAR3(1)   ----------->RAV1(1)             <---------HSFB2a(2) <---------YAB1 ------ZmHOX2a(1)<---------DEAR3(1)  ---------->DOF2      <----------DOF2      <---------YAB1<------- --ZmHOX2a(1) <---------SPL7 --------->REM1(1) --------->ANAC58    --------->At4g35610       <-------   aaggagttgaggcggtagtccggcggattctacaacaaagaaagtacttaagctacaaaactttgcagaagcagccaacttgtgatggtagaattgctgg  11674500                                                                ------>NtERF2                                                                --------->LBD16                                                               <---------ANAC46                                                            --------->ALFIN1                                                           ------->MYC2                                                           ------->MYC3                                                           <-------MYC3                             <                        --------->DAG2                     <-------MYC2                       <------                      ---------->DOF2                     <---------ANAC58                    <------              <---------MYB52(1)                          <---------ANAC58       <---------ANAC58 --- --ANAC58    <-------GAMYB                           <-------TEIL                <---------ANAC58 --- --ANAC46   ----------->GT1                         --------->AtLEC2----------->GT1         --------- --ANAC58   <---------ZAT6  <-------TEIL    --------->MYB52(1) --------->RAP2.3(2)     <----------DOF2   taattgcatagggactgttaatccaaaaggtgcaacttgtacttactaccagagatgcaaacgtgccgcatagttatttatcttcgtgtcttttttataa  11674600                                                                                                -----                                                      <---------GLK1(2)                      --------    <---------ICU4                        --------->AHL20(2)                              <---------ICU4    --------->YAB1                        <---------AHL20(2)         ----------->GT1      --------->YAB1   --------->ICU4                    --------->AHL20(2)     <---------YAB1               --------->ICU4 ---------YAB1                       <---------AHL20(2)<---------RVE1(1)               --------->YAB1 ---AHL20(2)                 <---------YAB1           --------->ARR11(3)          ---------->DOF2 ---YAB1                     <---------ANAC46 ----------->GT1    --------->AHL20(2) ----------->GT1 -------->GT1<----------DOF2 <---------ANAC55(1)  ---------->DOF2<---------AHL20(2)<---------TOE2(3) ------>YAB1<---------DAG2 <---------ICU4--------->YAB1<---------CCA1(1)         <---------AHL20(2) >YAB1<-----------RAV1(1) --------->ICU4<---------YAB1<---------ARR11(3) ---------->DOF2 <---------YAB1   ttgtaattatgttgcctttttcttcttaattatgtgtgttttattaaaatgtaaaagattttttgattaaaatgtaaaagaatttaaagtaataataaga  11674700  Previous    Next  AGI:  At3g29780.1    Description:  RALFL27 (RALF-LIKE 27). contains InterPro domain Rapid ALkalinization Factor (InterPro:IPR008801) Range:  from: 11674220    to: 11674668    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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