Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <------ZmHOX2a(1)        <---------TOE2(3)     <---------MYB46(3) <---------YAB1              <--------P ------->YAB1               <-------GAMYB ------>HAHB4              <------MYB46(1) --------ICU4              <------MYB83                                                           --- ------>ICU4              <------MYB46(1)  <---------ALFIN1                                     ----- -------ATHB51            <---------MYB46(3)                                 ---------->DOF2   <----- --->AHL20(2)             <------MYB83    <---------REM1(2)               --------->YAB1 --------->DAG2 ----AHL20(2)           <--------P     xxxxxxxxxxxxxxxx>smallRNA(i) ----------->GT1     ---------->DOF2 -->AHL20(2)      --------->MYB52(1)  xxxxxxxxxxxxxxxx>smallRNA(i)---------->DOF2   --------->AHL20(2)   attatgattttaggaaaaaaaaacgggttgggttgtttcaagtctccacagtgttttgctctcaagaacaaagtaaaaataaagaataaaaaaagttatc  11641600                                                                                             --------                                                                                             --------                                                      <---------AtLEC2               <---------HSFB2a(2)                                                   ------->MYC3                      <-----------RAV1(1)     <------MYB83                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             --------->HSFB2a(2)     <------MYB46(1)              <---------AHL20(2) <-------TEIL                   <---------LBD16    --------->MYB59        --------->GLK1(2)       <-------MYC3                   <---------ARR14(2)    --------->MYB46(2)     --------->ARR11(3)      <-------MYC2             <------ZmHOX2a(1)<------- XXXXXXXXXXXXXXXXXXXXXXX>MIR405A/B/D        ------>ZmHOX2a(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->DOF2              <---------ARR11(3)      ------->MYC2 <----------DOF2   --------->ARR14(2) ---->YAB1          --------->TOE2(3)      --------->TOE2(3)<---------GLK1(1)     --------->ARR11(3)- ----YAB1           --------->TOE1(3)      --------->TOE1(3)--------->GLK1(1)   ----------->ARR10   <   aaaagttaggtctaaacaataaccttaaaaatctatatatatgttccttaaaacgtgcatggatttctttgaaaataaggagaagttctggggcgaattt  11641700                                                             --------->REM1(1)             --------->ANAC46                                              XXXXXXXXXXXXXXXXXXXX>MIR401                 <---------HSFB2a(2)                                            --------->ARR14(2)                            --------->HSFB2a(2)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    --------->ANAC58                               --------->AHL20(2)          ----------->RAV1(1)           --------->ANAC46                               <---------AHL20(2)          =================RAV         -------->P <- <---------ARR14(2)           <---------AHL20(2)      --------->ETT(2) <------MYB46(1)  ------>MYB46(1) --------->ARR14(2)           <---------AHL20(1)      <---------ANAC58 <---------MYB46(3)--------->ANAC58 --------->ARR11(3)           --------->AHL20(1)      <---------ANAC58 <------MYB83   --------->TOE2(2) <---------ARR11(3)           --------->AHL20(2)     <------NtERF2    --------->ALFIN1--------->AtMYB61 ->ARR14(2)             <---------ANAC55(2) <---------ARR14(2)        <---------AtMYB61 ------>MYB83 ->GLK1(2)              --------->ANAC58    --------->ARR11(3)  <-----------RAV1(2)   --------->TOE1(2) --ARR14(2)             --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      ------>NtERF2 --- -------->GLK1(1)       --------->ANAC55(2) <---------ARR11(3)------>NtERF2        <---------ALFIN1<- ---------GLK1(1)     <-----------GT1  <-----------HVH21  ----------->HVH21     <---------ETT(2)  <--   ggaaatcttcaaaacttcagtaagttacgaaatttaattcccatcagatattggtgtcgagcgacaccaggggtggtttcgatcgacacctacgcgaagt  11641800                                                       <---------ICU4                                                       <---------GLK1(2)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           --------->ARR11(3)   --------->At4g35610                    --------->At4g35610     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------DAG2<---------ARR11(3)---------->DOF2          <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        --------->TOE1(3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->MYB52(1) -----MYB46(1)      <---------At4g35610    --------->LBD16                    ----------->GT1 ------>MYB59<----------DOF2              <---------HSFB2a(2)              <---------ATHB12         < -----MYB83 <---------YAB1xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------AtMYB61    ----------->RAV1(1)    --------->HSFB2a(2)       ------->TEIL--------->AHL20(2)  -   ttggtctccaaattacttttgcagcataagttctctattttgctccagaaagctccataatctccaaatgtatcccaaacatgtaaatacctgaaaaata  11641900                                                                                      *TSS    <xxxxxx                                                                                    --------->LBD16                                                                                   --------->ANAC58          <---------HSFB2a(2)          <-----------GT1                             --------->ANAC58          --------->HSFB2a(2)     --------->AHL20(2)                              --------->MYB46(3)  ---------->DOF2           <----------DOF2                 ----------->GT1       <---------LBD16 ---------YAB1              --------->TOE2(3)          ---------->DOF2 <---------TOE2(3) <xxxxxxxxxxx ---------->TBP             --------->TOE1(3)  --------->YAB1      <------------CBF--------->ANAC46   ctataaaagactctagaaataacaaaaaaactttaaaaatataactaaatcatagctaaaagcagtgaaaattgaggtatatcacccgcgatggaatgtg  11642000          --------->TOE2(3)              ------>MYB83     --------->ZAT2                      --------->ANAC58     <---------ZAT2         --------->LBD16     --------->At4g35610   <---------HSFB2a(2)     <---------At4g35610   --------->HSFB2a(2)   --------->HSFB2a(2)    <---------LBD16--------->ANAC58                --------->DAG2         <----   <---------HSFB2a(2)  ------->TEIL     ------>MYB46(1)     <----------DOF2                --------- <-------TEIL   --------->YAB1         <---------ALFIN1      <---------DAG2                <---------YAB1 xxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->DAG2            <---------At4g35610           --------->YAB1 xxxxxsmallRNA(i) <---------YAB1---------->DOF2       ----------->HVH21 ---------->DOF2 <---------YAB1   aggttcgagcagccttatttatgatgcatccggaaaaagcaccaagcctagatggtatgacagcttttttttgaaaaagcatgggataccattataaagg  11642100                                                                              <---------DDF1                                                                             ----------->HVH21                                                                             --------->DREB2C(2)                                                                          <---------WRKY18(1)                                                                    --------->ANAC46                                                                    --------->ANAC58                                                                    --------->ANAC55(2)                                                                    --------->ANAC55(1)                                                                   <---------LBD16                                                                  --------->CCA1(2)                                                              --------->AHL20(2)                                                         <---------YAB1  ----------->HVH21                                                 --------->At5g28300--------->ANAC58             <---     <---------YAB1                             ----------->GT1  <---------ARR14(2)             -----  <---------YAB1                             --------->MYB52(1)  --------->ARR14(2)             <---- --ZmHOX2a(1)                                ------------>MYB.PH3(1)<---------ANAC55(2)        <----- ->DOF2                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------KAN4(2)      ------   acctattattcttggttaactcattccttcaagatgaagttttcgataaacggttaaatacgattaatatacggaatgaccgacatggatgactgaatta  11642200                             ----------->GT1                            --------->DAG2                           ---------->DOF2 ------RAP2.6(2)     <------MYB83                       ----------->GT1             <---------LBD16 ---->RAP2.6(3)      <------MYB46(1)                ---------->DOF2           --------->TOE2(3) -----At5g28300      ----------->GT1      --------->ARR11(3)                <---------ARR11(3) ------GT1       --------->ICU4           <---------ARR11(3)          ----------->GT1    --------->GLK1(1) --->MYB52(1)    <-----------RAV1(1)      --------->GLK1(2)---------->DOF2  --------->ARR11(3)   cggcccattactctttgtaatgttggtaataaagttatttcaaaaatcttttgtcaaagagtaaagacggttttgttaaatcttatttcggaaatacaat  11642300               ----------->GT1              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---------DEAR3(1)              <---------RAP2.6(2)                                                     ----------->GT1             --------->RAP2.6(3)                                                 --------->AtLEC2            <------ZmHOX2a(1)                                                    <---------ANAC55(2)         <---------------AtSPL3                                               <---------MYB52(1)      <---------HSFB2a(2)            --------->YAB1                          <-----------HVH21      --------->HSFB2a(2)           <---------YAB1                           <-----------TGA1     <---------LBD16             <---------YAB1                             --------->ANAC46    <---------ANAC46           --------->ZAT6                            -------->P ---------->DOF2 <----------DOF2             --------->YAB1                           <---------MYB52(2)      <------   atgcttttgtggaaggacggctaatctcgaataatactattatcgcacaagagaatgttttatgggataagaactaacccgtcatgtaaagaaaaattca  11642400                            ----------->HVH21                                       ---------->DOF2                          --------->At4g35610    --------->ATHB12              <---------ANAC46                        --------->YAB1          <---------YAB1    --------------->AGL15               <---------YAB1                   <---------AHL20(2)===================================          ========================================================================MADS_MADS        <-          <---------------AGL15             <---------GLK1(2) <---------YAB1   <---------ANAC58   <-- -TEIL    --------------->AGL15   <------ZmHOX2a(1)      ----------->GT1       <---------ANAC58  <---   tggccattgaaactaatatgagtaaatcatatgacaggatgaaatagaatttcattgagaagttattacaaaaaatgggtttcttggaaagttgattttg  11642500  Previous    Next  AGI:  At3g29774.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 2.6e-07 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 11641986    to: 11643393    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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