Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   <-               <---------HSFB2a(2)                                                                <--          <---------AHL20(2)                                   <-----------RAV1(1)                ---         --------->AHL20(2)                      ------>MYB46(1)                                  ---         <---------AHL20(2)                      ------>MYB83  <---------ICU4                     <-- ------->At4g35610                              ----------->RAV1(1)   <---------RAP2.6(3)        ---- ---->ZmHOX2a(1)                   --------->At4g35610      <---------ICU4                       <--- --------At4g35610                 <---------At4g35610  <-----------GT1                   --------->MYB59   cctctgaaaaatttaatctcgaacatcaacaaatttgagcttcgcattaccaacaaaattactaattgttgccctcatggtctccaaactattcggtaga  11612800                                                           <---------ANAC58                                                           <-------GAMYB                                                           <---------ANAC58                                                          <------MYB46(1)            ---------->DOF2                               <------MYB83     --------->YAB1                                       <---------MYB46(3)  ------>ZmHOX2a(1)                                       --------->MYB55(2) ----->ZmHOX2a(2)                                  --------->YAB1 -----ZmHOX2a(2)                                 ------>MYB46(1)   <---------ATHB51      --------->ANAC46 -------ARR14(2)            --------->YAB1       ------>MYB83      --------->ICU4       <---------ZAT18 ------>ARR11(3)            <---------ICU4     ------->GAMYB<---------WOX13(1)          --------->ZAT18 ------>ARR14(2)      <---------At4g35610      <---------------AGL15                  <-------MYC3 -------ARR11(3)     ------->TEIL              --------------->AGL15       ---------->DOF2--------->At4g35610 ----->GLK1(1)    --------->ANAC58            ----------------->AGL3  <---------YAB1  ------->MYC3 ------GLK1(1)    --------->ANAC58            ----------------->AGL2--------->YAB1<-------TEIL   gatcctatcaaaatcaaagcatgcatctcatcatcaaactctatttcaaccaaatatagttggttgacaattatgttgaaagcattcatgtgcgctacaa  11612900                             --------->MYB52(1)                           --------->DOF5.7(2)                   <---------MYB52(1)                  --------->At5g28300                  <-------GAMYB                 ----------->GT1                <---------TOE1(3)                <---------ANAC46                <---------TOE2(3)             --------->ARR14(2)             <---------ARR14(2)                             <---------AHL20(2)             <---------MYB52(1)<------------MYB.PH3(1)<-------GAMYB            <-------GAMYB  --------->At5g28300        --------->At5g28300         xxxxxxxxxxxxxxxx>smallRNA(s)                ----------->GT1        <xxxxxxxxxxxxxxxxsmallRNA(s)                <---------TOE2(3)        ------------>AtMYB77 <---------DOF5.7(2)    <---------ANAC46                     <-----------       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------TOE1(3)          --------->TOE2(3)     <---------WRKY18(1) <---------TOE2(3)         <---------At5g28300   --------->TOE1(3)  <--------    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------ARR14(2)      --------->TOE2(3)<----------    ----------->HVH21  <-----------GT1           --------->ARR14(2)<----------DOF2     <---------MYB52(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC46--------->AHL20(2)  --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  --------->AHL20(2)  <---------AHL20(2)  --------->TOE1(3) ----   gtaggcatgaccacggttacggttattacggtaacggtttattaaacaccagttacggttataaatttgctttaaccttaatcttaaccgttatatatat  11613000                       <-------GAMYB                       --------->At5g28300                   ------------>MYB.PH3(1)                                  <---------YAB1                --------------->AtSPL3                                    --------->YAB1                <---------------AtSPL3                                    <---------ICU4                <---------------AtSPL8                ----------->GT1     -------->HAHB4      -------                --------->MYB59                      --------->DAG2    <---------ICU4         <------              <---------MYB52(1)            ----------->GT1            --------->YAB1         <------        --------->ARR14(2)                 <---------TOE2(3)          <---------YAB1        <--------        <---------ARR14(2)                 <---------YAB1             --------->ICU4       --------->AHL20(2)        <---------MYB52(1)                 <---------TOE1(3)        --------->YAB1         --------->AHL20(1)   ------------>MYB.PH3(1)              <---------ARR14(2)     <---------AHL20(2)        --------->AHL20(1) ------AGL3<---------TOE2(3)            --------->ARR14(2)     --------->YAB1            <---------AHL20(1) -AHL20(2) <---------ANAC46             <---------MYB52(1)     --------->AHL20(2)        --------->AHL20(2) -----AGL15<---------TOE1(3)           <-------GAMYB---------->DOF2<---------YAB1 ----------->GT1<--- ------->GT1 <-------GAMYB         ------------>MYB.PH3(1) <---------YAB1--------->ICU4  <---------ARR11(3)   ggttaaaacggttacggttaagtacggttacagtttaatacggttatggttaaataaagttacaattatatgataattatgaaatagtcaaaatattata  11613100                    <---------AHL20(2)                   --------->AHL20(2)                 --------->ICU4               --------->AHL20(2)                   --------->ANAC55(2)           <---------YAB1                         <-----------GT1                  ------->TEIL <---------AHL20(2)<---------AHL20(2)        <---------AHL20(2)                 <---------YAB1 -->AHL20(1)   <---------AHL20(1)            --------->AHL20(2)               --------->YAB1 ---AHL20(1)   <---------AHL20(2)         <---------ICU4                --------->ARR11(3) ---AHL20(2)--------->YAB1<---------ZAT6 --------->ICU4                 <---------ARR11(3)          - -YAB1 <----------DOF2  ----------->GT1--------->AHL20(2)              --------->CCA1(1)         <<<< ------AHL20(2)--------->AHL20(1)      --------->YAB1 <---------YAB1   --------->RVE1(1)<---------MYB52(1)   ttttttattctttataataaaataaatagtgatatatcaaataatatttattttacatgattatgtgcttcaaatatctataatgaatcagttatctatt  11613200                                               <------------CBF                                              <--------ATHB1                                              --------->ATHB12                                              <---------ICU4                                           --------->YAB1                                       --------->ICU4                       --------->AHL20(1) <---------YAB1                       <---------AHL20(1)--------->AHL20(2)                       <---------AHL20(2)<---------AHL20(2)                       --------->AHL20(2)--------->AHL20(1)                      --------->AHL20(2)<---------ICU4                      <---------AHL20(2)--------->YAB1                    *TSS   <---------AHL20(2) -------->HAHB4              --------->MYB46(3)       <---------YAB1             ------>MYB46(1)         <--------HAHB4              <---------ANAC55(2)             ------>MYB83  --------->AHL20(2)--------->ICU4      --------->ANAC55(2)           --------->TOE2(2)         <---------ICU4       --------->YAB1                        -----           --------->TOE1(2)        --------->ICU4        <-----------GT1          --------->ANAC58          --------->MYB46(3) ---------->DOF2 <---------YAB1------------>CBF        --------->ANAC58 -------->TOE2(3) --------->AHL20(2)<---------YAB1 ----------->GT1               --------->MYB52(1) <<<<<<GT-3b--------->MYB52(1)    --------->YAB1<---------WOX13(1)    <-----------GT1   ------------>CBF   tttcttaaataaaccaacgaataaataaattaaaagtcataattataatgattgagttaataacaatatgtattacaacttccaaacgaaaacaatacca  11613300                                                         --------->YAB1                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                        <---------YAB1                                                      -------->HAHB4                                                      <--------ATHB1              <---------ANAC46                        <---------ICU4              <---------ANAC58                        <--------HAHB4       <------------CBF                               --------->ATHB51     <---------ARR11(3)                               --------->YAB1                               --     --------->ARR14(2)                              --------->ICU4                           <------     --------->ARR14(3)                              --------->AHL20(2)                       -------     <---------ARR14(3)                              <---------ATHB51               <---------TOE2(3)     --------->ARR11(3)                              <---------YAB1             <---------WOX13(1) <-     <---------ARR14(2)                            --------->YAB1               <----------DOF2   ---   ----------->ARR10       <---------TOE2(3)      <---------ATHB51       --------->ATHB12     <------ ----->DOF2   <---------ANAC58      --------->YAB1<---------ATHB12      <---------YAB1 --------->ARR11(3)   aagagaagatattgtgacttgtgagcattaagaaacaattttaagagtatcaataataattatatgaactacttatgatttgatttatggatattgagca  11613400                                                                  <---------YAB1                                                                 --------->AHL20(1)                                                                 <---------AHL20(2)      <---------ANAC46                                           <---------AHL20(1)      <---------ANAC58                                          <---------AHL20(2)      <---------ANAC58                                          --------->AHL20(2) <---------ANAC58                                               --------->YAB1 <---------ANAC46                                              <---------YAB1 <---------ANAC58       <---------ZAT18                      <---------ICU4 ------->ZAT14          --------->ZAT18                      --------->YAB1 ---ZAT14  --------->ARR11(3)                               --------->AHL20(2) -->ZAT14  <---------ARR11(3)               <-----------GT1 <---------ATHB51 --------ZAT14        <---------ZAT18   --------->AHL20(2)  --------->ICU4 ------>ALFIN1        --------->ZAT18   <---------AHL20(2)  <---------AHL20(2)        --------->YAB1 ---At4g35610------>ZmHOX2a(2)  <-----------GT1    <---------AHL20(2)           --------->ANAC46<----   gtggagtggcttagatcgtactagtgggcacattaaacgattttaaatactattttagtgaaataattatatttagaattatacacaattacaactatat  11613500                                                     <-----------GT1                                                     ------------>AtMYB77                                              <-------GAMYB                                    --------->ARR14(1)                                    ------------>MYB.PH3(1)                           <---------ATHB12   --------->At5g28300                          ------>MYB83       ----------->GT1                          ------>MYB46(1)   <---------ANAC46              <---------AHL20(2)                         --------->MYB52(1) <---------TOE2(3)             --------->AHL20(2)                        --------->TOE1(2)   <---------TOE1(3)   <---------MYB52(1)------->GAMYB                        --------->TOE2(2)<---------ARR14(2)   <---------ZAT6      --------->TOE2(3)         <-----------GT1------->GAMYB   <-------GAMYB--------->MYB52(1) <---------AHL20(2)        <--  <---------TOE1(3)    --------->MYB46(3)--------->ARR14(2) <---------At5g28300 <---------At5g28300  <---------TOE2(3)    <---------MYB52(2)<---------MYB52(1)------------>AtMYB77<-----------GT1   <--- -----AHL20(2)   ----------->GT1 <---------YAB1<---------MYB52(1)    <---------AHL20(1)     ------>ZmHOX2a(2)   ttttaaggttttaactatatggttaaccaacgattttgatacggttacggttaattaacagttacagttagtatatttttttaaccgtagttgatctatt  11613600                 <---------MYB52(1)                  --------->At5g28300                <-------GAMYB                        <-------GAMYB              <---------TOE2(3)                  --------->CCA1(2)              <---------ANAC46                  <---------ARR14(2)           <---------MYB52(1)                   --------->ARR14(2)           --------->ARR14(2)               <---------MYB46(3)           <---------ARR14(2)              --------->ALFIN1      ------------>AtMYB77             <---------At5g28300      <---------DOF5.7(2)            <---------MYB52(1)        <-----------HVH21            ---------      ------------>MYB.PH3(1)        <---------ARR14(2)        <---------SPL7               <-------GAMYB      --------->MYB52(1)             --------->ARR14(2)       ------->GAMYB                ----------     <---------WRKY38(1)   <---------MYB52(1)<------NtERF2 --------->MYB52(1)             <---------ANAC46    --------->DOF5.7(2) <------------MYB.PH3(1) --------->ARR11(1)                        <---------TOE2(3) <---------TOE1(3)     <---------At5g28300 <---------ANAC46<-----------GT1                <---------TOE1(3) <---------TOE2(3)    <-----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <---------At5g28300 <---------YAB1 --------->At5g28300 <-------GAMYB--------->ARR14(1)  <---------ARR14(2)<---------ARR14(2) -------YAB1  <---------TOE1(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           ------------>MYB.PH3(1) ------AHL20(2)----------->GT1    <---------TOE2(3) ----------->GT1  --------->ARR14(2)--------->ARR14(2)   tttatggttaacggttacggttattaaccgttttctacggttacggtggggatacggttaataacggtccggttacagtctaaaatacagttacggttat  11613700  Previous    Next  AGI:  At3g29768.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.4e-85 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum) Range:  from: 11610679    to: 11613220    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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