Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->KAN4(1)                                                                            --------->ANAC46                                                                            --------->ANAC55(2)                                                                        --------->HSFB2a(1)                                                                        <---------HSFB2a(1)                --------->ATHB12                                       <---------KAN4(2)               <---------AHL20(2)    <---------HSFB2a(2)             <------ZmHOX2a(1) <-----------RAV1(2)                 --------->HSFB2a(2)         --------->TOE1(2)                 <- --------->RAV1(1)       <----------CDC5                        --------->YAB1   <---------KAN4(1) -- ---->GAMYB    <---------YAB1<---------At4g35610               <---------YAB1--------->LBD16       --   cccacaggggaatcaatttcattgcaggctgagcttcttctgcaaatggagtccatttagatactatcataggaatgtccgtaatattccacatacccct  11608800                                                                                                   <-                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                               ------                                                                                              -------                                                                                     ------>ZmHOX2a(2)                                                                                    <------ZmHOX2a(2)                                             <---------MYB46(3)                    <-----------ARR10                                            <---------YAB1                         <---------ARR14(2)                                         <---------YAB1                            --------->ARR14(2)                                       --------->ANAC55(2)                         --------->GLK1(2)                                       <---------ANAC55(2)                         --------->ARR14(3)                                  --------->ANAC46                                 <---------ARR14(3)                                  --------->ANAC55(2)                              --------->ARR11(3)         <---------MYB52(1)       --------->ANAC58                                 <---------ARR11(3)       <---------MYB46(3)         --------->ANAC55(1)                              <---------AGP1---- --------ZAT14                    <---------ANAC55(2)                            ----------->ARR10<-- ------->ZAT14                    --------->ANAC58  <-------TEIL        --------->WOX13(1)    ------- ------->REM1(2)      ----------------->AGL1<---------WOX13(1)       --------->TOE2(3)        -------   gtgtagtattcgttgcctcatacttccaattcggacacgaaacgtgattgttgattcatttacttcaaaaacatcaattagtgaagatctgtctccaagc  11608900                                         --------->ARR11(3)                                         <---------ARR11(3)                                         <---------ARR14(2)     ------>ZmHOX2a(2)                   <---------AGP1    <------ZmHOX2a(2)                    --------->ARR14(2)   <-----------ARR10                 ------->MYC3   <---------ARR14(2)              <-------MYC3   --------->ARR14(3)              ------->MYC3   --------->AGP1                 <---------TGA1a   <---------AGP1                 =====================bZIP_DOF   <---------ARR11(3)             =====================bZIP_DOF   <---------ARR14(3)             --------->TGA1a   --------->ARR11(3)             <---------O2   --------->ARR14(2)             --------->O2  <---------CCA1(2)             <---------ALFIN1 -----NtERF2               =================bZIP_DOF ---------HVH21            <----------DOF2 --->NtERF2               --------->HSFB2a(1) ----->RAP2.3(3)          ------>ZmHOX2a(2) ----->RAP2.6(2)        <---------ARR11(3)                    <---------LBD16 ----->RAP2.3(2)        --------->ARR11(3)  <----------DOF2<---------HSFC1(2) ----->DEAR3(1)         <---------AGP1  <---------CCA1(2)  --------->HSFC1(2) ------ATERF1(2)        ------->TEIL <-------MYC3          <---------HSFB2a(1) ----->ANAC46           --------->ARR14(2) ====================HOX2a_HOX2a ---->RAP2.3(1)         <---------ARR14(2) ------>ZmHOX2a(2)<----------DOF2 --->ZAT2       <<<<<<<<<ARR1  ----------------->AG        --------->HSFB2a(1)        <---------TOE2(3) -->ANAC58      <<<<<<<<<ARR2  <-----------------AGL3    <---------ARR14(2)--------->HSFB2a(1) ----->ATERF1(2)<---------ATHB12<---------------AGL15   <------ZmHOX2a(1)  <---------HSFB2a(1) -------RAP2.6(3)--------->YAB1----------------->AGL2 <---------TOE2(3)   <---------ARR11(3)       -- -->ANAC58 <-----------GT1<---------HSFB2a(1)    <-----------RAV1(1)  <---------YAB1---------->DOF2-- -->ANAC46 --------->YAB1 =====================================HOX2a_HOX2a--------->ARR11(3)   ------   cgccagatcttattcacaatcatatggatctttcccacatgtggatcttttgtgttgaggaactttcggattatgaaatcttcccacaaaggttttgcac  11609000                                                                             <---------ANAC55(2)                                                                             --------->ANAC55(2)                                                                           --------->CCA1(2)                                                                           --------->ARR14(1)                                                                          --------->ARR11(1)                                                                          --------->ARR14(2)                                                                          <---------ARR14(2)                                                                        ----------->ARR10                                                                      ---------->DOF2                                                                   ----------->GT1                                                                   <------MYB83                                                                   <---------ANAC46                                                                   <------MYB46(1)                      <---------ALFIN1                            --------->MYB59                      ------->GAMYB --------->YAB1              <---------MYB52(1)               ----    <---------ALFIN1 --------->MYB46(3)                        <-------GAMYB<-------TEIL  --------->O2 ---->MYB46(1)       <---------MYB55(2)          <---------ALFIN1<---------ANAC46         <---------O2 ---->MYB83      <-------TEIL       ------->GAMYB--------->AtMYB61<---------MYB46(3)    <---------ALFIN1 ->TEIL    ------>ZmHOX2a(1)       --------->MYB46(3)         <-----------RAV1(1)    --------->ANAC46   ctacaaacacctccttaggtacaaccaccttcttgcaaccatcaacttcgaccacttcaaatttctgttgggtaaagatacgtttctgagccacttggag  11609100                                                                             *TSS   <---------------AGL15                  <---------ANAC55(2)                                    --------->At4g35610          --------->HSFB2a(2)                                         --------->ATERF1(1)============       <----------DOF2           ------>ZmHOX2a(1)                   <---------ATERF1(1) ---------->DOF2       <---------DAG2           --------->TOE1(3)   <---------------------WRI1      --------------->AGL15   <---------WRKY38(1)          --------->TOE2(3)  <----------DOF2   ------>NtERF2 <---------ANAC55(2)   <---------WRKY12     <-----------GT1 <---------ALFIN1       ---------->DOF2   --------->AHL20(2) ------>DOF2    --------->AHL20(2)   --------->ZAT6--------------------->WRI1--------->REM1(1)   aaaggtcaacttttggaattacatataaacacttccttagctctacctctctactttgatatcaacaaaggcgactgctacaattacatataaaagaaaa  11609200               <-------MYC3               ------->MYC3              ================================================bZIP_DOF              <---------O2                                             <-------TEIL              --------->TGA1a                                   --------->ATHB12              <---------TGA1a                                  <---------YAB1                 <------              --------->O2                                   --------->YAB1   <---------YAB1 ------->GAMYB            <---------ALFIN1                             ------>ZmHOX2a(1)    <---------AHL20(2)   <- --------->MYB59                                        --------->TOE2(3)    --------->AHL20(2)    <- <---------TOE2(3)                                 <----------DOF2 <---------TOE1(2)     <---------ATHB12 =======================bZIP_DOF                   <---------DAG2  <---------TOE2(2)     --------->ICU4   atttaggtaaacacacacatgggccaaaaatacccaaaatacacttactcaaacttttcctaaacatcataggttcatatataatagagcaataactgtc  11609300          --------->DAG2         ---------->DOF2                                                           <-------TEIL       <---------------AGL15                                                   ------>MYB46(1)  --------->DOF5.7(2)                                                          ------>MYB83 -----HVH21  --------->ALFIN1                        --------->HSFB2a(1)      --------->MYB52(1) --------TOE2(2)                  <-------TEIL<----------ID1                 --------->TOE2(2) --------TOE1(2)              <---------TOE1(2)  --------->MYB46(3)         --------->MYB46(3) ------   atacgtttacataaagtggaaccatatagtcatacgttcacatagaatggaacaaatgttccttcttcatagaataaaaccaacgtccattctatacacc  11609400                                                                                                <----                                                                                               ------                                                                                               ======                                                                                              =======                                                                                             xxxxxxxx                                               ----------->GT1     --------->TOE1(3)        <--------                    --------->ANAC46  <---------ALFIN1             --------->TOE2(3) xxxxxxxxxxxxxxxx                ---------->ID1  --------->GLK1(2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xx         <---------TOE2(3)      <---------ARR11(3)     ----------->GT1      --------->ARR14(2)<------ZmHOX2a(2) --->ANAC46--------->ARR11(3)   --------->ARR11(3)  --------->CCA1(2)   --------->ZAT6      xxxxxxxxx   ctaaatagcttaagatttgtctccacaactcaaaaatcttccacttggagagtgatatggttcaaattgccttaaccctattctctcaaataagagatcg  11609500                                                                                     <---------AHL20(2)                                                                                     --------->AHL20(2)                          ---------->DOF2                                        --------->ATHB12          <---------TOE2(3)                                                      --------->YAB1 -----MYB46(3)          ------>ZmHOX2a(1)                                        ----------->GT1 >ZmHOX2a(2)       --------->GLK1(1)                                            <---------YAB1 ==============================HOX2a_HOX2a     <---------ATHB12                 --------->ICU4 ==============================HOX2a_HOX2a--------->ANAC46              <---------STY1(2) xxxxxxxxxxxxxx>smallRNA(se3)             --------->ANAC58              --------->STY1(2)       ----- -GLK1(1) <---------TOE1(3)      <----------DOF2                       --------->ANAC58       ------- xxxxxxx>smallRNA(fl3) --------->TOE2(3)  --------->ANAC58             --------->ANAC58  --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ZAT18       <---------YAB1--------->ANAC58  -------- xxxxxxxxxxxxxx>smallRNA(s2)     ------>ZmHOX2a(1)           --------->ICU4--------->ANAC58 ---------   gttgcagtatttaagggtcgaatttcctcaaagtccttttgttcacacaatgaattcaatgtcaagattaggctagcaaggaatgattaaaataaaaagt  11609600                                                                                                -----                                                                                                <----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                 <---------DOF5.7(2)                                     <---------ARR11(3)                           <---------ANAC58                                              --------->AGP1                           <---------ANAC58                                              <---------ARR14(2)   ----------->GT1         <---------ANAC46                                              <---------AGP1  --------->DAG2          <------MYB46(1)                                                --------->ARR11(3) ---------->DOF2          <---------MYB46(3)                                    <---------MYB46(3) ---->AHL20(2)            <------MYB83                         --------->ARR14(2)   --------->MYB52(2) ---->GT1             --------->ATHB12                <------ZmHOX2a(1)     --------->ATHB12   <----- ->DAG2              <---------YAB1                 --------->MYB59<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ->DOF2 ---------->DOF2 <---------WOX13(1)  ---------->DOF2    <---------ARR14(2) <--------P  <------   aaataaagtaaaaagacagcatattgattggttgtaaacgatgaaataaagagttaggaatagggtattctcagaaaactattggttagtagatctaatg  11609700  Previous    Next  AGI:  At3g29767.1    Description:  transposable element gene. pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 35% identity and 7.4e-43 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus} Range:  from: 11606506    to: 11609177    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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