Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->MYB46(3)                                        --------->ANAC58                                        --------->ANAC58                                   ----------->HVH21                   --------->ANAC46                              ------->GAMYB   --------->YAB1          ------->TEIL                             --------->MYB46(3)                     <---------ZAT18                             <------------AtMYB77                  --------->AtLEC2             -----                            <---------At4g35610               --------->ANAC58               <-------                            --------->At4g35610               --------->ANAC58            <---------AHL20(2)   aaactctccaacttcaacatgtttttttgcaactgccatgacaaccaattgtagttgatgagcgaagcaatgcacataatatgcagagctattttctttc  11599200                                                                                        <<<<<<<<<<AGL24                                                                                        <<<<<<<<<<AGL20                                                    <---------ARR14(2)               <---------------AGL15                                                    --------->ARR14(2)               --------------->AGL15                                                    <xxxxxxxxxxxxxxxxxxsmallRNA(le3)<----------------       <---------ARR11(3)                 <---------ZAT2                            <----------------       --------->ARR11(3)                 --------->At4g35610        <----------DOF2-----------------      --------->YAB1                   <---------ANAC58              <---------DAG2 -----------------     <---------ATHB12             <-----------RAV1(1)              <---------At4g35610  <<<<<<<<<<AGL22 ---->YAB1              <----------DOF2<---------ANAC58           <xxxxxxxxxxxxxxxxsmallRNA(i)     -- ---DOF2 ------>ZmHOX2a(2)   <----------DOF2       <---------CCA1(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   aaaatcaatgatcttagtccattgaactttcctttcatgttgctagctccatcgtatcccttccctctcagctttttcaaactcaatccatatttagcaa  11599300                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                           <---------MYB46(2)                                                                           --------->MYB46(3)                                                                           <---------MYB111(1)                                                                           <---------MYB52(2)    --------->GLK1(2)                            --------->YAB1<---------ARR11(3) -AGL3                                        ------->MYC3     --------->ARR11(3) -AGL2                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <-----------GT1 >AGL2                    ---------->DOF2     <-------MYC3  --------->AHL20(2)--------->ANAC46    <-- >AGL3         <---------DAG2    --------->ARR11(3)         <---------ATHB12 -------->P           --- -------->DOF2 <----------DOF2   <---------ARR11(3)   --------->ZAT6  <----------DOF2        --------   acaaagaatcaatagcacttttcagagataaagaagatgtctcttgcacatgaataacaccaataaatctttctttaactaccccatacttatcaacgaa  11599400                                                    --------->ANAC58                               <-                                                    --------->ANAC58  <---------YAB1          ------>ZmHOX2a(2)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        ---------                                           <-------TEIL            --------->ICU4           <--------                                         <---------ARR14(2)        <---------YAB1           <--------                                     --------->At4g35610    ---------->DOF2                 ---------                                   --------->MYB46(3)   --------->ANAC58               --------->YAB1 >smallRNA(fl3)                    <-----------RAV1(2)  --------->ANAC46               <--------ATHB1 --------ID1                      --------->At4g35610   --------->ANAC58              <---------ATHB12 -------->GT1                    <-----------HVH21  --------->ANAC46<---------ICU4    <---------ATHB51 ->ANAC46            <----------DOF2 <---------At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<------ZmHOX2a(2)   gcgaaaaactactgccatttgctctttatctgaagcatcagccgattcatctacaagcaagccaaagacatcattatccatttcttcaataatagatcta  11599500             --------->ANAC58                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <---------HSFB2a(2)                                 <---------YAB1 ----------------->AGL1                   <xxxxxxxxxxxxxxxxsmallRNA(i) ----------GT1            <---------AHL20(1)        <---------At4g35610 >ARR11(3)   --------->ANAC58         <---------AtMYB61----------->GT1                      <-------- -ARR11(3) ---------->DOF2<---------ARR11(3)        --------->At4g35610         --------->ANAC46 -AGP1  --------->HSFB2a(2)  <----------DOF2    <-----------HVH21          <-----------GT1<----------DOF2 >AGP1--------->At4g35610 --------->ARR11(3) <---------At4g35610   <------ZmHOX2a(1)  <----------DOF2   gttacctcttctgaaaagcaatggacaatatctttttgaattggtggagatgtcatctggttatttttaggagcatttttcaacacaactttctttacaa  11599600                                                                    --------->YAB1                <---------ZAT14                                     <---------ICU4         xxxxxxxxxx                --------->ZAT14                 <---------MYB46(3) --------->ICU4        --------->TOE2(3)           --------->ZAT2                  <---------MYB52(1)    --------->YAB1        --------->ICU4           <---------ZAT2                --------------->AGL15  <-------TEIL--------->ANAC46           --------->At4g35610        <-----------GT1       <---------YAB1  --------->ANAC58   <---------ICU4       ---------->DOF2<-----------GT1    <---------At4g35610     --------->YAB1 ---GT1    <---------At4g35610     <---------ICU4  --------->WRKY38(1)      --------->ANAC58  <------   cttcattctgaccagctgtatacttcaaaagctctaaaaattacccttatttgttgactcttctgattcatcatgaccacgaaatggtaatccttgatgt  11599700                                                                                         xxxxxxxxxxxx                                                                                         ------>NtERF2                                                                                        xxxxxxxxxxxxx                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                       --------->RAP2.3(1)                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       <------NtERF2                                                                                       --------->ATERF1(1)                                                                                      <---------ATERF1(1)                                                                                      <---------ERF1                                                                                      <---------RAP2.3(1)                                              <---------ICU4                         <---------ANAC46                                             <---------YAB1                          <---------ANAC58                                             --------->ICU4                          <---------ANAC58               ------------>CBF              <---------ATHB12       <---------ANAC46 <---------DEAR3(1)       <---------HSFB2a(2)          <---------GLK1(2)               <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)       --------->HSFB2a(2)          <---------ARR14(2)              <---------ANAC58<----------------      <---------ANAC46              --------->ARR14(2)  ----------->RAV1(1)         <---------LBD16     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->YAB1  <------------CBF   --------->ZAT14   --------->ALFIN1               --------->LBD16      --------->ANAC46       --------->ZAT18 xxxxxxxxxx>smallRNA(fl3)        ------->GAMYB--------->YAB1  <---------MYB46(3)  --------->ALFIN1  < ---REM1(1)   --------->TOE2(3) <---------LBD16      --------->ANAC46         <---------ZAT14  ------   aacaagtgtcgagaaacatcaatggaagcattcaaccggattcgataatcattctccacaacattggtttgcttatggagagcagtggcggagccagaac  11599800                                 ----------->GT1                    --------->AHL20(2)          ----------->GT1   --------->ANAC58 xxxxxxxxxx>smallRNA(si3)   --------->ANAC46 xxxxxxxx>smallRNA(si3) --------->AHL20(2) xx>smallRNA(i)     <---------AHL20(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <- xxxxxxxxx>smallRNA(fl3)<---------AHL20(2)          --------->YAB1                            <xxxxxx -------TaNAC69(2)  --------->AHL20(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             --------->ZAT6 xxxxxxxxxxxxxxxxsmallRNA(i)--------->ANAC58     --------->YAB1                   ---------->DOF2 --- ------>CBF        --------->AHL20(2)    <----------DOF2------------>CBF--------->AHL20(2)------->TEIL   aatgactcactggggtcaaaaaaaaattaaacgaaacgataaactttactataaacataacaatgtcattacaaataaaaactctaaagatgaactctac  11599900                                                                                                 <---                                                                                                -----                                                          <---------ANAC58                      -----                                                          <---------ANAC58                     xxxxxx       <---------ARR11(3)          <---------MYB52(1) <---------ANAC58                      <xxxxxxxx       <---------ARR11(1)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <xxxxxxxx       --------->ARR11(3)     <---------GLK1(2)       <---------ANAC58                     <xxxxxxxxx       <---------ARR14(2)     <---------ARR14(2)  <---------ANAC55(2)              <xxxxxxxxxxxxxxxxx       --------->ARR14(2)     --------->ARR14(2)  --------->ANAC55(2)              <---------ATHB12<x      <---------CCA1(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->WOX13(1)<x    --------->YAB1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->AHL20(2) <---------ANAC55(2) ------TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)  --------------->AtSPL8      --------->ANAC58  <xxxxx xxxxxxxxxxxxxxxxxsmallRNA(le3) <-------TEIL <---------ZAT6<----------DOF2   --------->ANAC58 xxxxxxx ------>DOF5.7(2)        <-----------GT1<-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxx   gttcactcatatcttggaatcgttttatcaccgattcgtttgtaacagtgttaagtacttgcttttcaataaaacaaacaagacaatcacttaagaacac  11600000             --------->ANAC58             --------->ANAC46             --------->ANAC58             <---------ANAC55(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)             --------->ANAC55(2)          <---------MYB52(1)          <---------ARR14(2)          --------->ARR14(2)         <-------GAMYB        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->ARR14(2)    <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------HVH21 ---->bZIP60(2)    --------->ZAT14 ---->ANAC46<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxsmallRNA(l2)                  --------->GLK1(1) xxxxxxsmallRNA(si3)   <---------ZAT6       <---------ARR14(2)               <------ZmHOX2a(1) xxxxxxxxxxxxxxxsmallRNA(s)                 --------->ARR14(2)          ----------->RAV1(1)   <------ xxxxxxxxxxxxxxxsmallRNA(i)               --------->LBD16          <-------GAMYB           xxxxxxxxxx xxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------ANAC46    <-------GAMYB <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(se3)         <---------LBD16     <---------MYB46(3)           <xxxxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(i2)      <-------TEIL <-------TEIL<-----------RAV1(1)      ---------->DOF2   atcaccgatacggttacgcaatgtagtcttcacaaaattcatcgcggaaatacatctttcgactgttgccgttgcaacaggaagaatcaaagatagcttt  11600100  Previous    Next  AGI:  At3g29765.1    Description:  hAT dimerisation domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29763.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09660.1); similar to hAT dimerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G19260.1); similar to OSJNBb0016D16.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE04315.1); similar to H1005F08.16 [Oryza sativa (indica cultivar-group)] (GB:CAH65987.1); contains InterPro domain HAT dimerisation; (InterPro:IPR008906) Range:  from: 11597946    to: 11599556    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g29766.1    Description:  transposable element gene. pseudogene, similar to putative transposable element, similar to transposase (Tip100) GB:BAA36225 (Ipomoea purpurea); blastp match of 55% identity and 1.0e-224 P-value to GP|13122426|dbj|BAB32907.1||AP003047 putative transposable element {Oryza sativa (japonica cultivar-group)} Range:  from: 11599884    to: 11602300    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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