Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------ANAC46        <---------ANAC58                                                                <---------ARR11(3)        <---------ANAC58                                                                --------->ARR11(3)      <---------AHL20(2)                                                     <------ZmHOX2a(1)      --------->ARR11(3)                <---------STY1(2)                   ----------->GT1<--------- ------->ARR11(3)                       --------->STY1(2)     <---------ANAC55(2)    --------->AHL20(2) --------ARR11(3)                ---------->DOF2              --------->ANAC55(2)    <---------AHL20(2)   atatctaatttcttgtggtttactctgatattatctaaagctagctacttatacctgtttgattacatatttgaatgcaggaaaaaataaaatctttttt  11577800                                                                                            ---------                                                             ---------->DOF2          <-------TEIL                                               ----------->HVH21                     --------->CCA1(2)                                             <---------REM1(1)                      <---------ARR14(2)                                        ---------->DOF2<---------ANAC46             --------->ARR14(2)                                    <-----------GT1  --------->ALFIN1        --------->At4g35610 -DOF2----------->GT1          --------->TOE2(3)<-----------GT1              <---------At4g35610-----   ttgaaagaatgtaaaattgtattcagtcaaaaacctttttacaaaagatgtaacagtgtgtgtaaaagtttagaatataagctgaagatacaatagctga  11577900                                                              <-----------RAV1(1)                                                        --------->ANAC58                                                        --------->ANAC58               <---------LBD16                                                        --------->ANAC46            ------->TEIL                                                       --------->ATERF1(2)       ------>ZmHOX2a(1)                                                      ====================RAV------>ZmHOX2a(2)                                                     --------->ZAT2         <---------GLK1(1)                                                  --------->At4g35610       --------->GLK1(1)                                                  <---------At4g35610--------->At4g35610                                               ---------->DOF2=============================RAV                                      --------->ALFIN1<-----------RAV1(2)  <---------ARR11(3)   -----                                    <---------ANAC46 --------->At4g35610   --------->ARR11(3)   <---- ---------->DOF2                 <XXXXXXXXXXXXXXXXXXXXMIR858  --------->ALFIN1 ----------->RAV1(2) >At4g35610                     <-----------HVH21 --------->ZAT2     <---------At4g35610        <---- ----->DOF2            <------ZmHOX2a(1)      --------->AtMYB61  <---------REM1(1) <---------CCA1(2)   aagaaaagactagagaggttgtagaggatgaaggggtcgagtggagaaccaaagctgcaggcaagtgttgtagctgtgatctcctgtatctcggattgag  11578000                                                                     <---------ANAC46              <-                                                                     <---------ANAC58           -----                                                                     <---------ANAC58         <------                                                                     <---------O2         -----------                                                                     --------->O2         <----------                                                                     <---------bZIP60(2) ------------                                                     <---------At4g35610                 <-----------                                                <---------MYB46(3)  --------->RAP2.6(3)  ------------                                               --------->ALFIN1    <---------TGA2(2)     ------------                                               <---------DEAR3(1) ----------->TGA1       <-----------                                               <---------AtMYB61  ----------->HVH21    --------->ANAC58 ---->At4g35610                          <---------ARR14(2)     <---------ICU4         --------->ANAC46 -----ZAT2                           ------->TEIL    --------->At4g35610               --------->ANAC58 -----At4g35610        --------->WOX13(1)--------->ARR14(2) --------->ZAT18       <----------DOF2----   ctgattcgattacgaactgttttgtcaatgagcttgatgagcctattcggtggtgagctaagttcaccatgacgtctagcattcctttctcgccaaatgt  11578100         <---------ANAC46      <---------RAP2.6(2) -------P<---------ANAC58 ---->ALFIN1 -----RAV1(1) ---->AGL15 -----AGL15 ----->AGL3 ------AGL1 ----->AGL2        *TSS                <---------AHL20(2)                                <---------ARR11(3) ----->AGL1      <------ZmHOX2a(1)     --------->AHL20(2)      <---------GLK1(1)         --------->ARR11(3) ------AG<---------ANAC58<------------CBF  ------------>CBF   *TSS                ---------->DOF2 ------->GT1 ---------->DOF2  ----------->GT1       ----------->GT1           <---------ZAT6   ggtagattgtggcttgaaaggattgtagattgtggaaaaaataaaatcaatagagagtgaaatggatttcacatccactagtgttaaagaagatgttgtg  11578200                                                                       <----------DOF2                                                                       ==============================                                                                     <------NtERF2                      <---------LBD16                            --------->ZAT2                      --------->TOE2(2)                          --------->STY1(2)                <--                      --------->TOE1(2)        --------->ALFIN1  <---------At4g35610            <----                     ----------->RAV1(2) <------MYB46(1)         --------->At4g35610            -----              <----------ID1             <------MYB83            <---------ZAT2                 <----            ---------->DOF2            <--------P               ------>MYB83                    -----          <------ZmHOX2a(1)            --------->ALFIN1 --------->TOE2(3)                       -----      <---------TOE1(1)               <-------GAMYB    --------->REM1(1)                     --------      <---------TOE2(1)      <---------ZAT6   <------NtERF2     ------>MYB46(1)              <-------   actcaagtactaggaaaagacaaacctgggagagttagagggttgggcagaggggctacattaacctagctggcatttttgcaagttagagactcacatg  11578300 ==bZIP_DOF -----TEIL                                                                       <---------TOE2(3) ---MYC3                                                                         --------->MYB59 -->MYC3                   -------->ATHB1                                     xxxxxxxxxxxxxxxxxxxxxxx ---MYC2                   --------->ATHB51                      <---------AHL20(2)              ---- -->MYC4                   --------->ATHB12                      --------->AHL20(2)             ----- -->MYC2                  <---------YAB1                  ----------->GT1    --------->YAB1     ----- ->TGA1a             <---------ARR11(3)              <---------GLK1(2)    ----------->GT1       ----- --TGA1a   <---------At4g35610                    --------->HSFB2a(2)   <---------ANAC46 ------->TEIL   tgcataaatttgaagctactcaagaactattattgagcaaggttgaagacttacagaatgttgttaaaaaaatggctagtaataaggtatgtactcagac  11578400                                                                            ------>NtERF2          --                                                                           --------->RAP2.6(2)    ---                                                                           <---------ALFIN1       <--                                                                          --------->MYB46(3)     ----                                                                         --------->At4g35610     <---         <---------ZAT6  --------->MYB52(2)                              <---------At4g35610     ----     <---------ZAT14   <---------MYB52(1)                               --------->ANAC46         <--- >smallRNA(le3)   ------>ZmHOX2a(2)                            <---------AHL20(2)                <--- -->NtERF2 <---------MYB52(1)                                  --------->AHL20(2)                ---- ---->ANAC46    --------->ARR11(3)                             <---------AHL20(1)      --------->ANAC58 ---->ANAC58    <---------ARR11(3)                             --------->AHL20(1)      --------->ANAC58 ---->ANAC58  <---------YAB1              <---------RVE1(1)   --------->AHL20(2)  <---------YAB1<----   gcccttgtttactgttatgatctatgttagttaacttctatgtgatattttagtcttctaacaattttatttctcagccaccttgtgatactcaatccag  11578500        --------->MYB46(3)       -------->P       --------->ANAC58       --------->ANAC58   --------->ANAC58   --------->ANAC58                                 --------->At4g35610 ---->ZmHOX2a(2)                                   --------->GLK1(2) ------>CCA1(2)                          <---------------AGL15 ----ZmHOX2a(2)                          --------------->AGL15 ----->ARR14(2)                         <-----------------AGL2 ------ARR11(3)              <<<<<<<<<<<<WRKY18   <---------GLK1(2) ----->AGP1               <------NtERF2 <-----------------AGL3 ------AGP1              <-----------HVH21 --------->ATHB12 ------ARR14(2)  --------->ZAT6         <-----------------AGL1      <---------YAB1 ----->ARR11(3) <---------At5g28300     <-----------------AG  --------->ARR11(3)               ------ -----CCA1(2)  <-----------GT1       <---------GLK1(2)        <---------ARR11(3)<------ZmHOX2a(1)   -   atctgaagcaaccaattttacagtaggcgtcaaatgtcaaattcttgatttggaatctgaagatgatattgttattgctgaaggagagttgtgttctact  11578600                                          <---------ZAT2                                          <---------At4g35610                                          --------->ZAT2                                          --------->At4g35610                                      --------->ANAC46                                    ---------->DOF2                                    ------>MYB46(1)                                    --------->MYB52(1)                                    ------>MYB83                                   ----------->HVH21                         --------->ZAT6  ------->TEIL              <-------TEIL         --------->MYB55(1)            --------->ARR11(1)    <---------MYB111(1)            <---------GLK1(2)     <---------MYB52(2)                          <---------HSFC1(2)            --------->ARR14(2)    <---------MYB59                             --------->HSFC1(2)    < --->ANAC46 <---------ARR14(2) <------ZmHOX2a(1)                             --------->ANAC58       < -------->MYB46(3)<---------ANAC46<---------MYB46(2)       --------->MYB52(1)--------->ANAC58      --   gaaccagcatataagattcgtcgtgtaccactaggacctaacgcagctgctattgtagtcaaaacggtatttgataaacaagcttctgtttggaggccta  11578700  Previous    Next  AGI:  At3g29738.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 11577913    to: 11578119    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g29739.1    Description:  transposable element gene. CACTA-like transposase family (Tnp1/En/Spm), has a 1.8e-33 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element) Range:  from: 11578162    to: 11579595    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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