Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         ------>ZmHOX2a(2)                                                                                     ------->TEIL                                                                                     --------->ARR14(2)                                                                                     <---------ARR14(2)                                                                            <---------------AGL15                                                                            --------------->AGL15                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       <---------AHL20(2)  ----------------->AGL3                                                      <---------AHL20(2)   <-----------------AGL2                                                      --------->AHL20(2)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <---------ALFIN1                ----------------->AGL2                  --------->YAB1           ----------->RAV1(1)    --------->WRKY38(1)<---------ARR11(3)                 <---------YAB1           --------->ANAC46   ------->TEIL  <-----------------AGL3                 --------->ICU4         --------->ANAC58   <-------TEIL  <---------ARR14(2)      --------->YAB1                    --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------YAB1    <---------YAB1   --------->ANAC46  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->GLK1(2) ----------->TGA1--------->YAB1<---------YAB1 --------->DOF5.7(2) --------->ARR11(3) <---------GLK1(2)<---------ICU4   <---------YAB1<---------AHL20(2)      --------->ARR14(2)        <- -ARR14(2)     --------->YAB1    --------->YAB1  --------->AHL20(2)     <---------CCA1(2)  --------->HSFB2a(2) >ARR14(2)    <---------YAB1    <---------YAB1--------->TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<   ccacattctgataactatcatcatgacgatagttatcatcataccccacattaaaattaaatgcatcgttcaccatatccacatatggatcttctacaat  11571100                                                                                                  <--                                                                                                  ---             <---------YAB1                                                                      ----             --------->ICU4                                                                 ---------    ------>MYB46(1)                    <---------ANAC46                                   ------>MYB46(1)    ------>MYB83                       <---------ANAC58                                   ------>MYB83   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC58                                 <---------MYB46(2)   <---------ALFIN1       --------->YAB1                          <---------ICU4        <---------MYB59  --------->MYB46(3)    --------->AHL20(2)                       <-------TEIL          --------->ANAC46 ----------GT1      --------->ZAT6 ------>ZmHOX2a(1)  ------>ZmHOX2a(1)        --------->AtLEC2------ -----------GT1<---------GLK1(2) ----------------->AGL1 <---------CCA1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   attacccacttcttcatgattctcactaaaataagtcctattcgtgtaactcgttcctatatccatattcatttcttctccatgcttataccaaacataa  11571200 -------ICU4                                                                --------->ANAC46      <-- ------>YAB1                                   --------->ANAC46    <---------ICU4          --------->YAB1 ----->ICU4                                    --------->LBD16    <---------YAB1     <------ZmHOX2a(1) >YAB1                                      -------->P        <-----------GT1 --------->ANAC46   <--- --->YAB1                            --------->ZAT6    <---------ANAC46     --------->ZAT6 --------->AHL20(2)   taatcaggcataaatccatgactaaacaaatgactactaactcttctacccgagatgatgtgtttttcattcttgcatacactacaaggacaatgaaatt  11571300                                                                         ----------->HVH21                                                                       <---------At4g35610                                                                       --------->At4g35610                                                                     <---------RAP2.6(2)                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)   <---------MYB52(1)            <---------ZAT14                                    <---------ANAC46       <-----------HVH21         --------------------->WRI1                            --------->ANAC55(2)    <-----------TGA1       --------->ZAT14                                    ------>ZmHOX2a(1)          --------->O2       <---------ZAT14   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----------->HVH21        --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 --------->TOE1(2)           --------->bZIP60(2) -------At5g28300    --------->At4g35610             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <-- --------GT1--------->ZAT14               <---------YAB1----------->RAV1(2)         --------->LBD16   tacctcgactactctgtactattggctgactattagcgaatgtcatgaattgctcaactcctgcgacgtattcggctgacaaattccccgtcacttcatc  11571400                                            <---------ICU4                                           <---------ATHB51                                           --------->ICU4         *TSS                                           <---------YAB1 ------>NtERF2                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       ------>NtERF2      --------->LBD16                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    --------->SPL7       --------->ANAC58                                   --------->ARR14(2)    --------->ANAC46                           <                                   <---------ARR14(2)    --------->ANAC58----------->GT1        <----                             --------->ANAC46           <---------LBD16 --------->DAG2      ---------                             ------->GAMYB<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------                            --------->DEAR3(2)       <-----------GT1   ---------->DOF2<---------AHL20(2)                            --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------AHL20(1) -------CCA1(2)           --------->ARR14(2)--------->ATHB51      ------------>CBF --------->AHL20(1)   aaatctcttgtacatccaatctcgatagaaaccgccagtaccgccataattgtagtttcccgccattatacaataaagtaactaatatttttttttctct  11571500                                                      <---------AHL20(2)                                                     <-----------TBP                                                     --------->AHL20(2)                                                    <---------YAB1                                             ------->TEIL                                             <---------TOE1(3)                                            <---------DOF5.7(2)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <---------MYB46(3)--------->DOF5.7(2)                        <------MYB83      ----------->HVH21                                     -----   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC55(2)                                     <---- <-----------RAV1(1)    <------MYB46(1) <---------ANAC46                                        <---- ---------TOE2(3)   <---------MYB46(3)  <---------ANAC55(1)                                 --------- ------DOF2         <-----------RAV1(1) <---------ANAC58         <---------DAG2         --------->REM1(1) ->ID1          --------->ATHB12        --------->ANAC55(2)  ------------>CBF      --------->ZAT6<--- --GT1         <---------YAB1           <---------ANAC58   --------->ANAC46     <-----------GT1 -----   ttgatgttgttgttgttttgatttgttggtgaaagaagagttgcgtgaacgtttattatataggccaatttttgtgactaatttacgactacaactaaat  11571600         <---------MYB59         <---------MYB46(2)         <---------MYB111(1)       ------->TEIL    <---------REM1(1)   --------------->AtSPL8   <---------------AtSPL8  <------MYB46(1)  <---------ANAC46  <---------ANAC55(1)  <------MYB83 --------->MYB59 --------->MYB111(1) ---->ICU4 -----ATHB51 <---------MYB111(1) -----AHL20(2)                                                  --------->HSFC1(2) >AHL20(2) ------>MYB46(1)                                     <---------O2 --------->ZAT14 ------ICU4------>MYB83       ------->MYC3 <---------DAG2      --------->O2 <---------ZAT14--------->O2 ---->AHL20(2) -------->P     <-------MYC3 <----------DOF2  ----------->HVH21              <---------O2   aattaggtgtacctacttaccaatgtgaaacacgttttccatctactttatacgactatggtgcgacgtttctacgactacaggctgactaagacgtcta  11571700                                                                                                    -                                                                                                <----                                                                                 <-----------GT1<----                                                                        ------->GAMYB          <-----                                                    --------->DOF5.7(2)--------->MYB46(3)      <-----                                        --------->At5g28300       --------->ANAC46             ------                                       ----------->GT1            --------->ANAC58             ------            <------NtERF2     --------->AHL20(2)    <---------MYB52(1) <----------ID1       ---------     --------->ZAT14          --------->AHL20(1)  ----------->GT1 --------->ANAC58          ---------    ------>ZmHOX2a(1)         <---------AHL20(2)  <---------MYB46(3) --------->MYB52(1)    <---------ATHB12   atcgtcctgtagtcgccaaattagcgactaaataaaatagacggtagaatagtcgttaattagcgactaagcaacgacaaaattatcccttcaataatat  11571800 --------->TOE2(3) <-----------HVH21 -------->YAB1             <----------DOF2 -----AHL20(2)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    <----- -----YAB1            ------>NtERF2                                                    <-----------HVH21 ----AHL20(1)   <---------ANAC58                                                      <---------REM1(1) ----AHL20(2)   <---------ANAC58                                                   <-----------RAV1(1) --->AHL20(1)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               <---------ANAC58 --->AHL20(2)  --------->MYB52(2)                          --------->MYB46(3)    <---------ANAC58   < >YAB1       <---------MYB52(1)                          --------->MYB52(1)    <-----------GT1 <----- >AHL20(2) <---------MYB46(3)    ------>NtERF2   ----------->GT1    ------->TEIL <---------ANAC46   -   aatcgtcaaatagtcgttacttgccgactctttgccgactgcatacgatagtcgtaaaacaacgactatgtaactacaatttttcgtgttgtcgcatgcg  11571900                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                            <-----------RAV1(1)     --------->ARR14(2)                     --------->MYB55(2)                                 ------     <---------ARR14(2)                     --------->MYB52(2)                                 ------    <---------GLK1(1)                       <---------MYB46(3)       --------->WRKY12   --------->YAB1    --------->GLK1(1)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ANAC58 ----ANAC58 <-----------HVH21             <---------MYB52(1)     <------NtERF2  <---------ANAC46 ---------ANAC46                   --------->ZAT6  <---------At4g35610          <---------ANAC58----- ----ANAC58<---------ETT(2)     <-----------GT1<-----------RAV1(1)  --------->DOF5.7(2)<---------ZAT6 ---------->GT1             <---------TOE2(3)<-------GAMYB     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   agtcgtaaatccgtcgtcaaatagtcgtataatgttacgactacgtttgttgtcgctgattgtagtcgtcgtttacctgttttcttgtagtgataatcct  11572000  Previous    Next  AGI:  At3g29732.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 9.9e-152 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus) Range:  from: 11567622    to: 11571466    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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