Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   --                                                                                                  <--                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <--                                         --------->AHL20(2)                                     <xxxx                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   -----                                 --------->At4g35610                                           ------                           <----------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <-----                <---------ARR14(2) <---------ZAT18                                            <xxxxxx   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<----------DOF2  ------>MYB83                       <---------AHL20(2) -------->ZAT14 --------->ARR14(2) --------->ZAT18 <-----------GT1                         --------->AHL20(2) ---------ZAT18<---------GLK1(1) <---------At4g35610    ------>MYB46(1)  <-----------GT1  --------->AHL20(2) -YAB1     ----------->RAV1(1) <-----------GT1 <---------YAB1   ----------->GT1        <---------AHL20(2)   agtagactcaatacaacatatcccttatacttttaagctcacttttaatattatcaccaacttaaaatgaaaaattcacattgctacatatatttaattt  11547400           --------->AHL20(2)          <---------AHL20(1)          <---------ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ZAT18 --------ICU4 ------->ATHB51     --------->TOE2(3) -------YAB1     <-----------GT1                                                 xxxxxxxxxxxxxxxxxxxx -------AHL20(2)<-----------GT1                --------->ZAT14                xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------ZAT18                <------ZmHOX2a(1) ---->YAB1--------->AHL20(1) --------->YAB1   <---------ZAT6                  xxxxxxxxxxxxxxxxxxxxxxx --->AHL20(2)  <---------AHL20(2)--------->DAG2--------->ZAT18         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(le3) ---------->DOF2<---------ZAT14     ----------->GT1   ataattgcacaaaatatttaaacctctatatttataaagttcaatctagtgtactactaaataaacaaattgtaaatataggaaatactgctaaacatga  11547500                                                                              <-------MYC2                                                                              ------->MYC2                                           --------->TOE1(3)                  <-------MYC4                                           --------->TOE2(3)                  <-------MYC3                                           --------->TOE1(2)                  ------->MYC3                                     --------->AtMYB61                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------ZAT18                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ANAC46                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(s)                                xxxxxxxxxxxxxxxx>smallRNA(i)            <------NtERF2                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    --------->At4g35610                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------At4g35610                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------ORA47(2)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------ATERF1(1)         --                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------DEAR3(1)         ----                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------RAP2.3(3)      ======                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                        <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->DAG2      <---------ARR11(3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ZAT6<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxsmallRNA(i)  ------        ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) >smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) >smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->At5g28300       --------->ARR11(3) >smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        ----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(i)   aaaacatggaaagtaatactatttgagaaattggcactaccaaaaccttagaaaatactatgctgtaaaaaggctgcgcacatgtcaaaaatctccaaaa  11547600           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         ------->PIF5         <-------MYC4                                   >>>>>>>>>MYB98         <-------MYC2                                  --------->MYB52(1)         <-------MYC3                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ------->MYC4                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <-------PIF5                                <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)         ------->MYC2                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         ------->MYC3                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->TGA1a                              <---------MYB46(2)        --------->O2                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------O2                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <---------TGA1a                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       ------------>OsbHLH66                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ALFIN1 <---------AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(i)                  ------>NtERF2    ----------------->PIF3(1)                     <---------ANAC46    <---------ALFIN1  <---------AHL20(1)          <---------RAP2.6(2)--------->GLK1(1)   --------->ZAT14    --------->AHL20(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <---------ZAT18    <---------AHL20(2)         ---------->ID1      --------->GLK1(2)   ------>NtERF2   <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                -- ------->ANAC46   <---------AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <-- ----->MYB52(1)   --------->AHL20(2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <------ =================bZIP_DOF           --------->LBD16<------NtERF2   <---------GLK1(2)         <------ ---->DOF2--------->ALFIN1    <<<<<<<<<MYB2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------   aacggcgcacacgtggggaattaatttttttggttttcccccaaaatttttggcgcctaacaaattttgagattccctccaaaaccaaaaatttcacttt  11547700     <-----------GT1    <----------DOF2     ---------->ID1    ------>ZmHOX2a(2) <----------DOF2     --------->ARR11(3) -------->ID1        <---------ARR11(3) ---------GT1 <----------DOF2           <----------DOF2           --------->O2 ----DOF2 <----------DOF2           <----------DOF2 <---------CCA1(2)      <---------CCA1(2) <------- ---DAG2------>ZmHOX2a(1)     <-----------GT1<---------At4g35610  <---------ALFIN1           -------- --GT1  ======================HOX2a_HOX2a    <---------CCA1(2)  <---------ALFIN1           xxxxxxxxxx   tttctttttcctctttctttttcgatcttttcttacaactttctttcatctctcatctctcttctcccacatctctcatctctctcttcgactcgaattc  11547800                                                                              --------->ALFIN1                                                                          ---------->DOF2                                                                        <---------YAB1                                                                   <---------YAB1<---------ANAC46                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(si3) --ARR14(2)      <----------DOF2                          xxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ->ARR14(2)  <----------DOF2                 <-----------HVH21 <---------------------WRI1 xxxxxxxxxxxxx>smallRNA(se3)        *TSS  xxxxxxxxxxxxxxxx>smallRNA(s)--------->CCA1(2)   tctcacatctctcatctttctttcatctttctaccatggatagactgtgtgagagagacccctactacgatgatatgaaagtggcgaagagagccattga  11547900                             --------->GLK1(1)                            --------->GLK1(1)       --------->MYB55(2)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ETT(2)                 <---------YAB1   <---------TOE1(2) <---------MYB46(3)                 --------->ICU4  ------>ZmHOX2a(1) --------->ALFIN1                    <---------ARR11(3)              <---------ANAC46  --------->TOE2(3)  <---------AtMYB61        <------ZmHOX2a(1)<-------         --------->ATHB12xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ETT(2)  ---------->DOF2         <---------MYB46(3) <---------GLK1(1)    <---------ANAC46       ---------->DOF2--------->ARR11(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------DEAR3(1)<---------ALFIN1  <----------------   gcaaatggaaatggttgcgatgatggaagggattcctaagttttgtccatgcggtggtagcattgtcgacactcgaaaggatgaaaagagatactatcaa  11548000                                                                   <---------AHL20(2)                                                                  <---------AHL20(1)                                                                  --------->AHL20(1)                                                                 --------->CCA1(2)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                <---------ARR11(3)                                                                <-----------------AGL3                                                            ------>ZmHOX2a(2)                                                           <------ZmHOX2a(2)                                                          --------->ARR14(2)                                                          <---------ARR11(3)                                                          --------->ARR11(3)                     ----                                                          --------->AGP1                         ----                                                          <---------AGP1                        <----                                                          <---------ARR14(2)                    <----                                                      ------>ZmHOX2a(2)                         <----                                                     <------ZmHOX2a(2)                       <-------                                                    --------->ARR11(3)                    -----------                                                    --------->ARR14(2)                    <----------                                                    <---------ARR11(3)  <------MYB46(1)  <-----------                     <---------REM1(1)              <---------ARR14(2)  <------MYB83     ------------                    <---------TOE2(3)               <---------AGP1<---------ARR11(3)     ------------          <---------TOE1(3)--------->ZAT18          --------->AGP1--------->ARR11(3)     <----------- --YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <---------CCA1(2)   --------->MYB59   <----------- -----WRI1<---------TOE2(3)<---------ZAT18     <---------ANAC46 =====================================   tgcgagaagtttaaggtatgttgatgtagagcacaagtttttcaagtttgtgtagatctagatctagatatatttggtatttcagagtatttcccgttat  11548100         <---------HSFB2a(2)                             <------ZmHOX2a(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->AGP1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->ARR11(3) ----->YAB1                                             <---------AGP1 ------->GT1             <---------ZAT14            ------>ZmHOX2a(2) -----TOE2(3)            --------->ZAT18           <------ZmHOX2a(2) -----YAB1               <---------ZAT18          <---------AGP1 -----TOE1(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------>ZmHOX2a(2) --MYB52(1)     --------->ANAC58                  --------->ARR11(3) ---->AGL15     <---------ANAC55(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -----AGL15     --------->ANAC55(2)               --------->AGP1 ------AGL2     --------->ANAC55(1)               <---------ARR11(3)              <----------DOF2 ----->AGL2     ----------->GT1                   <---------ARR14(2)         <------MYB46(1) ----->AGL1     --------->ANAC46                  --------->ARR14(2)         <------MYB83<------ZmHOX2a(1) ------AG--------->HSFB2a(2)                     <---------CCA1(2)          <---------------AtSPL8 ------AGL1 <<<<<<<ZML2  --------->ZAT14     <---------ANAC46           <---------AHL20(2)          - =====MADS_MADS --------->ANAC58       <---------TOE1(2)<---------ARR11(3)  --------->MYB59<---------YAB1   ggtaatactgcctagaacaagtaatactgcacaagtttttctaggttttgtagatctagatctatatttgataaatatttggtactttgtaggatgatag  11548200                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <---------MYB52(1)                <---------ANAC55(2)                                     <---------YAB1             --------->ARR14(2)                                      --------->ALFIN1     --------->HSFB2a(1)             <---------ARR14(2)                             --------->MYB52(1)            <---------HSFB2a(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------ANAC58                 --------->HSFC1(2)           ------->TEIL         --------->DAG2           <---------ANAC58                 <---------HSFC1(2)      xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 --------->At4g35610   <---------YAB1 --------->ATHB12--------->LBD16<---------TOE2(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ---- -------->ICU4  --------->TOE2(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->ICU4  ---------->DOF2   aactgattgtatgcacatccgtaaactttgggataaggctatggaagaagaggtgagtagcttaagggagagtgttgattacaatcggaagaaagttcta  11548300  Previous    Next  AGI:  At3g29700.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32070.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23490.1) Range:  from: 11547836    to: 11548411    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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