Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    ------>ZmHOX2a(2) <------ZmHOX2a(2) ---------ARR11(3) -------->ARR11(3) ---------ARR14(2)                                  <---------MYB52(2) -------->ARR14(2)                              <---------ATHB12   ----------->GT1 --------GLK1(1)                         --------->TOE1(3)         <---------ANAC58             <---- ------->GLK1(1)     ------>MYB46(1)     --------->TOE2(3)         <---------ANAC58<----------DOF2 --->TGA1            ------>MYB83  <---------ARR11(3) ---------->DOF2         ---------->DOF2   -----   gagatcccaaacatataaacaccaaatgtataaacaagataaaccttcaaatcaactaaagcttcttatgcgtaaaaaactaaagctttcaaagactaag  11503400                                                                     <---------At4g35610                                                                  <-------TEIL                     ---------->DOF2                        --------->ANAC58 -----At4g35610   --------->TOE2(3)                         --------->ANAC58 ---->At4g35610   --------->TOE1(3) ------>NtERF2    <---------YAB1  --------->At4g35610   atgcccaagttaaaatcaaaccttaaacccaaaattgaggccctaaattacaagtatgaaaaacgaaattcatctaactatgtcttaatctataatttca  11503500                                                                   --------->AHL20(2)                                                        --------->ANAC46                           ---------->DOF2              --------->ANAC58                      ------>ZmHOX2a(1)                 <---------AHL20(2)                     --------->AtLEC2                  <---------ARR14(2)                 --------->AHL20(2)                  <---------REM1(2)                    --------->ARR14(2)              --------->TOE2(3)--------->ARR11(3)--------->ZAT6 --------->TOE2(3)--------->ANAC58            <-------TEIL------->TEIL    ----------->GT1 --------->ANAC58         --------->ANAC58   aacacaaacacaaatacattaaaatgaatcaaagagctagatgagttattaagtctacatgcaatcccttaaaattaagagtcaagaaattgaatcctct  11503600                                                     <------NtERF2                                                    --------->LBD16                                                   <---------ANAC58                                                   <---------ANAC46                                                   <---------ANAC58                       <---------YAB1                                                  <------NtERF2                          --------->At5g28300                                                  --------->ATERF1(1)                  <---------DEAR3(1)                                                  <---------LBD16                   ----------->HVH21                                                <---------DEAR3(1)         --------->ATHB12  <-------                                             <-----------RAV1(1)        --------->At4g35610<---------MYB46(3)                                          --------->ARR14(2)            <---------At4g35610--------->ATHB12                                          <---------ARR14(2)        <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         <-------GAMYB             <-------GAMYB    --------->O2                                        <---------MYB46(3)         ===========================MYC_MYB  --------->ANAC58                     <---------DEAR3(1)         <------MYB83  <-----------HVH21  --------->ANAC55(1)                  <---------ANAC46           <------MYB46(1)   <---------O2  --------->ANAC46                     <---------RAP2.6(2)        <---------MYB46(3)--------->TGA1a  --------->ANAC58              ------->TEIL <---------AtMYB61   <---------AtMYB61  <---------TGA1a   ctacaagtaatatgaattctaagaaattaagacggaccttggcggttttggtggcggagaaggaagggaggttgagatgagtggtcacgacggtgattga  11503700                                  ----------->RAV1(1)                                  --------->AtMYB61                                 --------->MYB46(3)                               ------>NtERF2                          --------->MYB52(1)                               <---------ATERF1(1)              ------>NtERF2                               --------->ORA47(1)              --------->DEAR3(1)                              ----------->HVH21               --------->ATERF1(1)                              --------->RAP2.3(3)             <------NtERF2                              --------->DREB2C(2)            ------>NtERF2                              --------->DEAR3(1)            <---------DEAR3(1)                              --------->DEAR4(1)            ----------->HVH21                              <---------ETT(1)              --------->DEAR3(1)                             --------->DEAR4(2)            <------NtERF2                             --------->ATERF1(1)           --------->RAP2.3(1)                             --------->RAP2.3(1)           --------->ATERF1(1)                             --------->ORA47(2)           --------->LBD16                             <------NtERF2                <---------ATERF1(1)                             --------->DEAR3(2)           ------>NtERF2                            <---------RAP2.3(1)           <---------RAP2.3(1)                 -------                            <---------ATERF1(1)          <---------DEAR3(1)          --------->LBD16                            ------>NtERF2                --------->DEAR3(1)         --------->LBD16                           <---------ANAC46              <---------ATERF1(2)       <-----------------AGL1       --------->ANAC55(2) <---------DEAR3(1)            --------->ATERF1(2)       <---------LBD16    <-------TEIL          --------->ATERF1(1)           --------->ATERF1(1)       ------>ZmHOX2a(2)   --------->CCA1(2)     <---------ATERF1(1)            <---------LBD16     <---------At4g35610 --WOX13(1)             <---------DEAR3(1)    ---------->DOF2<---------ATERF1(1)--------->ARR11(3)   agaagattcaagtgactttggacacgatggcgccgaccacagagaaggcaaagaaatcgccggcgacgacgaaaacggagatgatcccggagatggcaaa  11503800               --------->REM1(2)              --------->ALFIN1             <---------ZAT14        <---------ANAC46       --------->ATERF1(1)       <------NtERF2      ------>NtERF2      <---------ATERF1(1)      --------->LBD16     <---------ATERF1(2)     --------->DEAR3(1)     --------->ATERF1(2)     <---------DEAR3(1)     --------->RAP2.3(3)     --------->RAP2.3(2)    --------->DEAR4(2)    --------->ERF1    <---------LBD16    --------->DEAR3(2)    --------->ORA47(2)    --------->RAP2.3(1)    --------->ATERF1(1)    <------NtERF2                     <---------AHL20(2)   <---------ATERF1(1)          --------->LBD16   <---------RAP2.3(1)         --------->LBD16                                                  ----- <---------ABI4(2) ----------->GT1<---------GLK1(2)                                  <------ZmHOX2a(1) --------->ZAT18 <---------ANAC46<------NtERF2    <---------At4g35610         ---------->DOF2 ------- --->DOF2   --------->ALFIN1  <---------LBD16*TSS --------->At4g35610<---------AHL20(2)    ----------   gaatgcgccggcgagtgtggagagtaagtttcgccggaattttttttttaagagctgaatgttttttttttttaatcgagtaaaggaggaagagagataa  11503900                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                        <---------GLK1(2)                                     <------                                      --------->MYB59                       ----------->GT1   <------ --------->CCA1(2)                    <---------TOE2(3)                   <---------ANAC46    ------- ----->DOF2                       --------->ARR14(2)            <---------YAB1                <------ -->CCA1(2)                       <---------ARR14(2)          <-----------GT1             <------ZmHOX2a(1) ->GT1                           <------ZmHOX2a(1)   <-----------GT1   <----------DOF2  --------->MYB59   aagatagggtttcgaaagactctaatacatttagaggatttaggttctcaaaattttactaaaattactatttcttttgtgtaaatagattaggaaatta  11504000       --------->AHL20(2)       <---------AHL20(2) --->ATHB12                ----------->GT1 --->ATHB51        --------->AHL20(2) ----ICU4          <---------AHL20(2) -->ATHB1          --------->AHL20(1) ---AHL20(2)  --------->AHL20(2)                                                                    < ---ATHB51 --------->YAB1 <---------TOE2(3)                                     ---------->DOF2    <- -->ICU4   --------->AHL20(2)                                              <---------------AGL15   -- ---YAB1  <---------YAB1---------->DOF2                                    --------------->AGL15   <-   ttgttttttttaattataaaataaaataaaggtaaataagacttagttttttttgaaaaacctatttgactaatctacaaaaaaaaggaatagatggaca  11504100                                                                                    <---------YAB1                        --------->AHL20(2)                                        <---------ICU4                        <---------AHL20(2)                                        <---------AHL20(2)                ------>ZmHOX2a(1)                                                 -------->HAHB4                <----------DOF2                                                   --------->ATHB51               --------->TOE2(3)                                                  --------->YAB1            --------->ARR11(3)                                                    -------->ATHB1            <---------ARR11(3)       <---------AHL20(2)                           <--------HAHB4           --------->GLK1(1)         <---------AHL20(1)                          <---------YAB1           <---------GLK1(1)         --------->AHL20(2)                          --------->ICU4          <---------ARR11(3)         --------->AHL20(1)                        <---------ICU4          --------->ARR11(3) <-----------GT1                                   --------->YAB1    <---------YAB1     <---------AHL20(1)                                     <---------YAB1 ---------AHL20(2)     <---------AHL20(2)                 ---------->DOF2     --------->ICU4 --------AHL20(2)      --------->AHL20(2)          <---------ATHB12      ----------->GT1    ------>ZmHOX2a(1) ------->AHL20(2)      --------->AHL20(1)    --------->ANAC46  --------->MYB52(1)<---------ATHB51 --------AHL20(1) --------->AHL20(2)<---------ATHB12--------->YAB1     ---------->DOF2   <-----------GT1   attttttttatagatatcctttaaatttaattttcccaataaaatatacacaaatcaaaacaaagtaactgctaaaagttataattattatttcctatac  11504200                     <XXXXXXXXXXXXXXXXXXXXMIR172C/D                                     --------->AHL20(2)                     <XXXXXXXXXXXXXXXXXXXXMIR172A/B                                ----------->GT1                     --------->At4g35610                                      --------->YAB1                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     --------->ICU4                  --------->At4g35610                                      --------->YAB1              <----------DOF2                                           --------->HSFC1(1)          <---------AHL20(1)                                  <---------ANAC46<---------ICU4        <       --------->AHL20(2)                          --------->ANAC55(2)  <---------HSFB2a(2)         -    --------->ANAC55(2)  --------->ATHB12          <---------ANAC55(2)  <---------HSFC1(1)          <  <-----------GT1 <---------At4g35610  ---------->DOF2   --------->YAB1 --------->HSFB2a(2)      xxxx   aaatttacataatatactttagcagcatcatttagtttctcaaaagtttcaattcgtaatagtagtgtgtttttctagaataatgaagaaaaaaatggaa  11504300  Previous    Next  AGI:  At3g29644.1    Description:  other RNA Range:  from: 11501678    to: 11503845    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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