Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <---------ANAC58                       <---------ANAC58                  <---------ICU4                                                      ----------->GT1                 <---------YAB1                                                <---------------AGL15               --------->ATHB12                                                --------------->AGL15              <------ZmHOX2a(2)                   <---------ZAT6           <---------GLK1(2)              <---------YAB1            --------->YAB1        --------->YAB1  <-----------GT1   -----             --------->ARR11(3)        --------->AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <--             <---------ARR11(3) --------->ZAT6    --------->ALFIN1XXXXXXXXXXXXXXXXXXXX>MIR413<-------   gaaacagtagaacaagatcattagtgcttatataacactcattaaaaatgaagtgttgattctaacatagtttctctgattctccatatagtgaataaca  11490100                                                                                --------->ATHB12                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         <---------ANAC46                                                                    <---------MYB46(3)                                                                   --------->ALFIN1                                                                   <---------AtMYB61 <-----------GT1                                                 <---------ANAC58   <------MYB46(1)-- ---->TOE2(3)                            <-----------GT1         <---------ANAC46   <------MYB83   -- -------ICU4                 <---------YAB1                      <---------ANAC58 XXXXXXXXXXXXXXXXXXX ----GT1      <---------TOE2(3)--------->ARR11(3)      ----------->GT1 <---------MYB46(3)          --   ttatttccttctgtttgatgtttaggctaatatgattttgttttctctatttttgtgaggttaaatggagtggttgtggagacgattggtacaagtagag  11490200        <---------AHL20(2)       --------->AHL20(1)       <---------AHL20(1)       --------->ARR11(3)                          <-------GAMYB       <---------ARR11(3)                         --------->MYB55(2)      --------->CCA1(2)                           --------->MYB111(2)     <---------ARR11(3)                           <---------MYB46(3)     --------->ARR11(3)                       --------->ALFIN1   --------->ANAC58                        --------->DAG2   --------->ANAC58                       ---------->DOF2             <---------MYB52(1) ------->ANAC58                         <---------AHL20(2)    --------->YAB1                       <- ------->ANAC58                --------->ANAC58  <--------P   --------->ATHB12                     -- X>MIR168A/B<-----------GT1    --------->ANAC58<---------MYB46(3) --------->MYB52(1)               -- ------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------WOX13(1)         <---------ZAT6   aacgcaagatatatttatcacatcaactaaatcaaggcatatttaaaagtggttgttgtctcattgattaccggtttgtgtttaatatagagttaagcgt  11490300       <----------DOF2   <---------ZAT14   --------->ZAT14   <---------ZAT18   --------->ZAT18                                                                                ---   <-------TEIL                                                                                   <-- --------------AtSPL8                --------->TOE1(3)                                    ----------- ------------->AtSPL3                --------->TOE2(3)                                  <-----------GT1 ------------->AtSPL8          <----------DOF2                                       <----------DOF2<   ataagtacactttcattcttctatttccttcttctttaaccttcaattttctctgaatttctcgtttccatcttcttcaaccttcttctttaacctgctt  11490400                        <-----------GT1            <---------YAB1                                                                    <------ ------>TOE2(3)        <-----------GT1                                                        ------- --------DOF2  ------->TEIL                                                                   ------- >RAV1(2) --------->CCA1(2)     <---------LBD16              --------->At4g35610           <------ZmHOX2a(2) ---------AHL20(2)    <---------AHL20(2)         <------------CBF                      --------->ALFIN1   ctttaatggatgatatgaatccattttatcagtcttcgggtttcatagacctattgcatagtcagcaagaagacataatcgttttgcaagtggatcatct  11490500                                                                                                    -                                                                                             <------MYB83         <----------DOF2                                                                     --------        --------->TOE1(3)                                                                    <------MYB46(1)        --------->TOE2(3)                                                                    <-------      ------>MYB46(1)                                                                       <--------      ------>MYB83                                                 --------->ANAC46        <--------P      -------->P                                             <---------ANAC58            --------->HSFC1(2)     <---------ALFIN1                                        <---------ANAC58            <---------HSFC1(2) ---At4g35610                                       --------->ZAT6<---------ZAT18        <---------MYB46(3) ---->RAV1(2)                                  ----------->GT1    --------->ZAT18        --------->HSFB2a(1) -->At4g35610            *TSS            --------->ICU4      <---------ANAC46            <---------HSFB2a(1)   gaagtcccaacctttaatacacaaatgtttgaagaaggaagtgaagatgaagtaacactcatgggttgtacacaagatgaagtcaaaccgaaggttggtt  11490600                                      <-----------TGA1                       <------MYB83                           --------->ARR14(2)                                <------MYB46(1)                           <---------ARR14(3)                              <---------WOX13(1)                           --------->ARR11(3)                            --------->ATHB12          --                           <---------ARR11(3)                           <---------YAB1             --                           --------->ARR14(3)                         --------->ANAC55(2)          <-    ---------->DOF2        <---------ARR14(2)                      <------ZmHOX2a(2)    ------>MYB46(1) -------->YAB1           ----------->ARR10                       --------->YAB1   --------->ICU4  <-- --->GT1            ---------->DOF2   <-----------HVH21--------->ZAT6 <---------ANAC55(2)       ----- --MYB46(3)       <---------------AGL15           <---------ANAC58--------->ARR11(3)    ------>MYB83 -AtMYB61         --------------->AGL15           <---------ANAC58<---------ARR11(3)   ----------->RAV1(1)   tatcacaaaagaaatggtttcccaaagaagatattgttctcgtcagggcatggcttaacactaacaaggatcatgtgattggtaatgaccaacaatgtca  11490700                                                                                              <<<<<<<                                                                                             --------                                       --------->LBD16                                      <--------                                       <------NtERF2                                        <--------                                      --------->ANAC46                                      <--------                                      --------->ANAC58                                     --------->WRKY18(1) <---------YAB1                       --------->ANAC58                                   <---------MYB46(3) ------->YAB1                        <---------ZAT18                                    --------->ALFIN1 ------>ATHB1                    <---------ICU4                                      --------->DAG2 --------ICU4                   <---------ATHB12                                   ---------->DOF2 -------ATHB12                --------->WOX13(1)         ---------->DOF2        --------->ANAC58 ---->WOX13(1)          <-----------RAV1(1)        --------->At4g35610          --------->ANAC58-----   atcattcttgaaacagattgcatcatatgttgcaatcagtccgcaacttgattatctgccaaagagagagcatgctaaatgtaagcaaaggtggtcaaag  11490800    ---------->DOF2          <---------YAB1   --------->YAB1           <-------GAMYB  --------->REM1(1) <<<<<WRKY18               ----------->GT1 --------->MYB46(3) -->DOF2                   <---------MYB46(3) -WRKY45  ----------->HVH21--------->MYB111(2)                          <------ZmHOX2a(1) -WRKY38(1)             <------MYB83--------->RAP2.6(3)         ---------->DOF2            <---------ANAC58 -WRKY12--------->ALFIN1<------MYB46(1)<------NtERF2        <---------ZAT18                <---------ANAC58 ------>GT1            <---------TOE1(2) ----------->RAV1(1)--------->ZAT18                <---------ANAC46   gtcaataaaagtgtgaccaagtttgtaggttgttataagacggcaacaactcataaaactagtggacaaagtgaggatgatgtaatgaagttggcttatg  11490900                                                                                            ---------                                                                                        -------------                                                                                        <------------                                                        <---------TOE2(3)              --------->ICU4                                                        <---------TOE1(3)              <-------------                                                 ---------->DOF2                       --------------           --------->YAB1                   --------->ALFIN1                    <---------At4g35610          <---------YAB1                  <---------ANAC58                      --------->At4g35610          <---------ATHB12                <---------ANAC46                <---------ANAC46<---------YAB1        --------->YAB1                    <---------ANAC58   <---------YAB1 ----------->HVH21   -----   aaatctactacaatgataccaagaagaagttcaacttagagcatacgtggagaaagttaaggtatgatcaaaaatggtgtgaagctgcaactattaaagg  11491000  Previous    Next  AGI:  At3g29640.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29632.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) Range:  from: 11490525    to: 11491040    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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