Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       ----------->HVH21                                                                                    <-----------HVH21                                                                                    xxxxxxxxxxxxxxxxx   --------->YAB1               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               --------->ALFIN1  <---------YAB1             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                 <-------MYC2 ---------ICU4              --------->TOE2(3)                                     ------->MYC3 -------->YAB1            <---------YAB1                            <---------ARR11(3) ------->ICU4         <---------ANAC55(2)                           --------->ARR11(3)  <---------ALFIN1 --------ATHB12       --------->ANAC55(2)                       ---------->DOF2   <-------MYC3 ----->WOX13(1)    ---------->ID1                             <---------YAB1      --------->TOE1(2) -ZmHOX2a(2)      <-----------HVH21                         --------->YAB1      ------->TEIL -->ARR11(3)   <----------DOF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->YAB1 ------->MYC2    --- ---ARR11(3)   <---------MYB52(1)     ------->TEIL          <---------ICU4 --------->At4g35610  <----   aattatcatagacatccctttgtcacttatccttgatatgcatttgatgtgaaacaacttgatcatgaaagataatttgctgaacgtgtgacacccttcg  11463900                                                            ------>ZmHOX2a(1)                                                          =========================HOX2a_HOX2a                                                          ================HOX2a_HOX2a                                                          ------>ZmHOX2a(2)                                                        --------->ARR11(3)                                                        <---------ARR11(3)                                                      <---------KAN4(1)                                                      <---------HSFB2a(1)                                                      --------->HSFB2a(1)                                                      --------->ICU4                                                      ----------->ARR10                                                      --------->KAN4(1)         ----------->HVH21                           <---------KAN4(2)      <-------TEIL                              --------------------->WRI1    --------->At4g35610 xxxxxx>smallRNA(si3)       --------->YAB1     <---------ANAC58             <------ZmHOX2a(1) ------>SPL7               <---------ATHB12    <---------ANAC46      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----SPL7       <---------YAB1                <---------ANAC58    <------ZmHOX2a(1)              ---   tacagaggttcatgacagtctgataacaaatcatcaaatgcctcattttacttggaatgatcctccctaggactattaggagcttcactaaaactattac  11464000                            --------->YAB1                                                          -                           <-------TEIL                                                       -------                      --------->YAB1                                                          <------                    --------->ANAC58                                                          -------                    --------->AtLEC2                                                         <xxxxxxx             --------->ARR11(3)                                                            <xxxxxxxxx             <---------ARR11(3)     <---------ANAC46         --------->GLK1(2)           ------>ZmHOX2a(1)            --------->CCA1(1)       <------MYB46(1)         <---------GLK1(2)            --------->LBD16     ----------->GT1--------->ANAC58<------MYB83    <---------ALFIN1                   ============== ------>YAB1--------->RVE1(1)      --------->MYB59 ------>ZmHOX2a(2)                   ------>ZmHOX2a(2)   tcatacttggaaaaatatctccaagcatattcatagttgggttttcaaaatgatccacattagattcttgttctactcttgttgtctgatcctgaaaatc  11464100          --------->AtLEC2    ------>ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------->ARR14(2) -->GLK1(2)                                                                          <---------ANAC46 ---ARR11(3)                                                                     <---------ANAC58 -->ARR11(3)                                                                     <---------ANAC58 xxxxxxxxxxxxxsmallRNA(si3)                                                     <---------ZAT2 xxxxxxxxxxxxxsmallRNA(fl3)                    --------->MYB52(1)     xxxxxxxxxxxxxxxx>smallRNA(s)  - ==========HOX2a_HOX2a           <---------TOE2(3)------->GAMYB      --------->TOE2(3)          <xxxx   tagttcctcaccatgaaaataccaatttgtatatgaaggtagaaacccataacagactaaatcaccttcaacctcgactctgagcttgtgtttagtaaga  11464200                          --------->YAB1                         <---------YAB1                         --------->ICU4                                 <---------ZAT18                       <---------ICU4                                   --------->ZAT14               <---------RVE1(1)                                      --------->ANAC46               <---------CCA1(1)                                      --------->ANAC58              <---------ARR11(3)                                      --------->ANAC58              --------->ARR11(3)                                 <----------DOF2             --------->YAB1   --------->GLK1(2)          --------->LBD16<---------ZAT14       ------>NtERF2  <---------YAB1<---------YAB1      <---------HSFB2a(2)      ----------->HVH21--------->YAB1       ---------->DOF2---------->DOF2 -------->MYB46(3) <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                 ------ xxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->YAB1          --------->HSFB2a(2)         <---------ZAT6   caacaacgctgacaaggatattttatcatgataatcttactattaccaaaggcaaaatccagaaagtctttcactccacttatgtagtcttgagaaaaaa  11464300                            *TSS<---------ATHB12                            ------------>CBF                           <-----------GT1                    ---------->ID1                    --------------->AGL15               <---------ARR11(3)                    <-----------------AGL2                  --------               --------->ARR14(2)            --------->AHL20(2)                   <---------YAB1 <--- --->AHL20(2)  <---------ARR14(2)       <---------YAB1===============================================   aatgttttgttatccaagatttgtccattttacaatcagtctatgaataaaacaaactagttatgggataactagttaatgactatatttgaaatataaa  11464400                                                                                                    <                                                                                                 <---                                                                                               ------                                                                                               <-----                                                                                               ------                              --------->ZAT6                                                  <------                          <---------AHL20(2)                <---------ARR14(2)                <------  <----------DOF2   ----------->GT1                     --------->At4g35610                   ------- --->TBP  <---------YAB1  --------->AHL20(2)       --------->YAB1                             ------- --------GT1 <---------------AGL15---------->DOF2 <---------YAB1--------->YAB1                ------- ============================MADS_MADS          --------->YAB1 ----------->GT1         ----------->GT1   aaccctttgattttcatagaaatggaaattaaacactaaagagaaacgaagcatcataagcagaaatgaaaatcaagtagcagtttatgtagtaaaatta  11464500  --------->ALFIN1 ---------ANAC46 ------YAB1 -->ATHB1 ----ICU4                                                                  --------->ZAT18 --->YAB1                                             <---------AHL20(2)   --------->ZAT14 ---YAB1  <---------ARR14(2)                        <---------YAB1         <---------ZAT14 ---AHL20(2)                            <-----------RAV1(1)                <---------ZAT18   <------- -->AHL20(1)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------------->AtSPL8------ -->AHL20(2) <----------DOF2            --------->ALFIN1                 <---------------AtSPL8------ -->ICU4  --------->ARR14(2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <---------ANAC46    <--------   ttatgtgtagcagttcttttcacaagaagtttagcagtttatgtgtggcagtttattattttcagtagcagtttatgtgtactaaaattatctaatcaag  11464600                                                                        --------->ANAC46                                                                        --------->ANAC58                                                    --------->ANAC58    --------->ANAC58      <------ZmHOX2a(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->At4g35610                    --------->ANAC46           ---------->DOF2 --ICU4                --------->ALFIN1  <---------ALFIN1      <---------At4g35610<------ZmHOX2a(2) --->ANAC58         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------->TEIL    --------->YAB1     <xxx --->ANAC58 <---------ICU4     <------ZmHOX2a(2)    --------->ANAC58 --------->YAB1             <---- -ATHB12   <---------ATHB12  --------->At4g35610    --------->ANAC46<---------ATHB12          -------   gcagtgagatcaaatcatttttcaagtggtgagatcaaaggctacacatcattcacgactcatgcatctaatcaaagcaatgagatcaaaacataaacat  11464700                                 <------ZmHOX2a(2)                                <---------ARR11(3)                                --------->AGP1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC46  ---------->DOF2           <---------YAB1                     <---------At4g35610   --------->ANAC58 --------->YAB1           --------->YAB1      <---------At4g35610   --------->ANAC58<---------ATHB12    --------->YAB1           ------->TEIL      --------->At4g35610 xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(2)   --------->ANAC58          --------->ZAT14 -----YAB1    <---------At4g35610--------->CCA1(2)    --------->ANAC46          <---------ZAT18   <-- -->YAB1     ------->TEIL       --------->ARR11(3)    --------->ANAC58<---------ATHB12          -----   cattcacgactcatgcatctaatcaaagcagtgagatctaaacataaacatcattcacgactcatgcatctaatcaaaccagtgagctcaaaacataaac  11464800  Previous    Next  AGI:  At3g29634.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 2.3e-159 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus) Range:  from: 11457138    to: 11464328    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version