Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <---------ANAC58                                       --------->MYB46(3)                        ----------->HVH21                                     --------->ANAC58               --------->GLK1(2)     <---------ANAC58                              ---------->DOF2                     --------->MYB46(3)   <---------GLK1(2)  ------>ZmHOX2a(2)          <xxxxxxxxxxxxxxxxsmallRNA(i)--------->GLK1(2)  <---------MYB46(3) --->ZmHOX2a(1)         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->WOX13(1) <---------MYB46(3) ->WRKY12           ----------->HVH21--------->ANAC58<---------At4g35610   <---------AtMYB61   ctgatcgtttagaactgaaggtatgacagtgtgaaagactagccactgaacattgagctaatctatcaacaatctgagtggttgtgacagtttcttgcta  11357700                    ---------->DOF2            <---------ARR14(2)            --------->ARR14(2)            <---------MYB52(1)         --------->MYB46(3)             --------->ANAC46                                ------->TEIL         <---------------------WRI1     --------->ANAC58                            <---------TOE1(2)        <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->ANAC58       --------->ATHB12     <---------TOE2(2)       --------->MYB52(1)   --------->ZAT14           <----------DOF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->MYB46(3)    <---------ZAT14          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <   agttctgaacaaccgataggcacaaagcactgaacagagtacaaggaagaggtatgctttgaaaatgtttggatagctactactcgcatgtatcaattgt  11357800                                <-------GAMYB                         --------->CCA1(2)                                            --------->ATHB12                        --------->ARR14(2)                                           <---------YAB1                        <---------ARR14(2)                                      <---------AHL20(2)                       <------ZmHOX2a(1)                                        --------->AHL20(2)                    <-----------RAV1(2)        <---------CCA1(2)               <---------AHL20(2)  <-           <---------ZAT14      --------->At4g35610                  <---------At4g35610           <-           --------->ZAT14     <---------MYB46(3)                    --------->At4g35610<---------WOX13(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------At4g35610        --------->AHL20(2)---- ---------MYB52(1)  <---------LBD16    <---------ATHB12           ------>ZmHOX2a(1)  <---------AHL20(2)   ctgtttgggtcactaaacagtttcaggatatggctgttgaaatcatctcatctctgctaattgcaatcctctgctaactaaaaaaatttgattgatgagt  11357900                             <---------ANAC55(1)                             <---------ANAC55(2)                             <---------ANAC46                        <---------MYB46(3)                        --------->MYB52(2)                      <---------MYB52(1)                          <xxxxxxxxxxxxxxxxsmallRNA(i)           <---------ZAT18   --------->ANAC55(2)             --------->ANAC58 --------ANAC58     <---------ANAC58                         --------->ANAC58              <------ZmHOX2a(1) --------ANAC58     <---------ANAC58                  --------->MYB59          ---------->DOF2 ----->GLK1(2) <----------DOF2                      xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(i)   ttcttggcaattgagcgcttatgcgtttgttaagtgtttcagagtaatacaatttttaggtccaagcccagttcgagtctcaaaagcccataaggattca  11358000                                               ----------->GT1                                          <------MYB83                                          <------MYB46(1)                                         --------->ALFIN1                                         --------->MYB111(2)                                       <-------GAMYB                                     <---------TOE2(3)                     ----------->GT1 <---------TOE1(3)             ---------->DOF2           <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <------ZmHOX2a(1)<----------DOF2         <---------ANAC46      <------ZmHOX2a(1)         --------->At4g35610                     ----         <---------LBD16  --------->DAG2 <---------AtMYB61 ------->GAMYB --------->HSFB2a(2)     ----        <---------LBD16  ---------->DOF2<--------P    <---------ATHB12   <---------HSFB2a(2)   ------   agaagtttttctcgggtattggagggaaaaagaggagttagggttggaggagtcaaatcaactgtctttgaaagtcgagaaggcaaacccttgtgctcaa  11358100                                                          --------->ARR11(3)                                                          <---------ARR11(3)                                                         --------->REM1(1)                         --                                                       ----------->RAV1(1)                        <--                                                  --------->At4g35610                             ---        *TSS                                   --------->LBD16                                   ----        --------->YAB1                        <---------ANAC46                                   <---     --------->WOX13(1)                       --------->HSFB2a(2)                                ----  --------->ARR14(2)                          <---------HSFB2a(2)                                <---  <---------ARR14(2)                          <---------LBD16                                    <--- --------->GLK1(1)                            <---------ANAC58                                   ---- ----->ANAC58                                 <---------ANAC58                                   ---- ----->ANAC58                       <---------ATHB12 <------NtERF2       --------->GLK1(1)      <---- ---->DOF2                        *TSS       <---------LBD16             <---------GLK1(1)      -----   agcaaatccatcagaactcgagtgagagagagcatgaaatcaattcttccggggctgcaacatcttgttcaccagaaatctgagtccgaattgtctggag  11358200          <---------At5g28300         <-----------GT1        <-------TEIL      --------->ARR14(2)      <---------GLK1(2)      <---------ARR14(2) -------->P ---->ZmHOX2a(2) ----ZmHOX2a(2) ------>CCA1(2) ----->ARR11(3) ------ARR14(2) ----->ARR14(3)             ------>NtERF2 ------ARR14(3)        ------>NtERF2       <---------At4g35610                         <----------DOF2 ------ARR11(3)       --------->ANAC58    --------->DEAR3(1)                        --------->ARR11(3) ----->AGP1 --------->DEAR3(1)      <---------ARR14(2)                              <---------ARR11(3) ----->ARR14(2)       --------->ANAC58   --------->MYB46(3)   xxxxxxxxxxxxxxxx>smallRNA(s) -----GLK1(1)      ----------->HVH21--------->ARR14(2)    <---------ARR11(3)----------->TGA1 ---->GLK1(1)      --------->DEAR3(1)  <---------ALFIN1  <---------GLK1(1)  ----------->HVH21   atctaccagattcacagcccagcgacgcgatgccagaggttccacagccgattgaatcgaaatctcaagaggtgaagtctgacgaagaacttttgatgcc  11358300                                            =====================HOX2a_HOX2a                                         --------->DEAR3(1)                                        <------NtERF2                                     --------->ERF1                                     --------->ATERF1(1)                                     <------NtERF2                                     --------->MYB46(3)                                     <---------ABI4(2)                                    <-----------HVH21                                    <---------ATERF1(1)                                    --------->ABI4(1)                                    ------>NtERF2                                   --------->ANAC58                                   --------->RRTF1(3)                                   --------->ANAC46                                   --------->DEAR3(1)                                   --------->RRTF1(2)                                   --------->ANAC58                                   --------->DREB2C(2)                                   --------->RAP2.3(2)                                   <---------ATERF1(2)                                   --------->ATERF1(2)                                  --------->ORA47(2)                                  --------->RRTF1(1)                                  --------->RAP2.6(1)                                  --------->RAP2.3(1)                                  --------->DEAR4(2)                                  --------->ERF1                                  --------->ATERF1(1)                                  <------NtERF2                                 ------>NtERF2                                 <---------At4g35610                                 <------NtERF2                                 <---------ATERF1(1)                                 --------->At4g35610                                --------->ANAC46                                        <-----------RAV1(2)                      <-----------HVH21------>NtERF2                                   <-------TEIL                   <---------ANAC55(2)<---------ALFIN1                            --------->YAB1                   <---------ANAC58--------->RAP2.6(2)                           <---------ATHB12                   <---------ANAC58--------->RAP2.3(3)                          ------>MYB83                   --------->ANAC55(2)--------->DEAR3(1)                        ------>MYB46(1)                 <---------YAB1 <---------ATERF1(1)                            --------->WOX13(1)               --------->YAB1   --------->ANAC58                             --------->MYB46(3)              <---------YAB1    <---------ALFIN1                            --------->ANAC58        --------->ZAT18         --------->ANAC58          <------ZmHOX2a(1) --------->ANAC58        <---------ZAT18     --------->ANAC58<------ZmHOX2a(2)              --------->WOX13(1)       --------->ALFIN1     --------->ANAC58<---------ATHB12            <-----------HVH21   tgattccaagtgggctatgatacttgtcacaggcccgccgccaccgatcatcgaaattgaggacgagactcagtcgtcaaccaatcaggttcagaaggct  11358400                                                   <---------ANAC58                                                   --------->ANAC55(2)                      <---------DAG2               <---------ANAC46                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    ------->TEIL                   <---------ANAC58     --------->At4g35610                   <---------ALFIN1                <---------ANAC55(2) --------->DEAR3(1)                  <------NtERF2          <----------DOF2              --------->MYB46(3)                  <---------At4g35610   <---------ANAC58           --------->MYB46(3)                 <---------ATERF1(1)    <---------ANAC46         --------->ANAC58            --------->LBD16             <---------ANAC58     --------->ANAC58         ---------->DOF2           --------->LBD16           <---------MYB52(1)      --------->ANAC58--------->ARR14(2)          --------->HSFB2a(2)       <-------GAMYB <-------TEIL   --------->ANAC58<---------ANAC46----          <---------HSFB2a(2)      <-----------RAV1(1)     <------ZmHOX2a(1) <---------ARR14(2)  ----         <---------LBD16       ------->GAMYB <---------TOE2(3)  --------->WOX13(1) --------->ALFIN1   gaaccaaaatttcccgaggctgcaccttctcaaccctctgttgcttcaaggatgcgtaagaggaagcaatccaccgctggatagggtggaaagcggatga  11358500                                  --------->TOE1(2)                                              ----                                -------->P              --------->HSFB2a(2)                      <---       <----------ID1           ------->TEIL            <---------HSFB2a(2)                      ----     --------->DAG2          <---------At4g35610   <-------TEIL                                  <---    ---------->DOF2          --------->At4g35610 <---------GLK1(2)                           -------- --------->ANAC58          --------->REM1(1)     --------->ARR14(2)                        --------->HSFB2a(2) --------->ANAC58        <----------DOF2         <---------ARR14(2)                        <---------HSFB2a(2) ----->ANAC58       <---------At5g28300     --------->ARR14(2)                ------->TEIL<---------LBD16 ----->ANAC58     <------ZmHOX2a(2)         <---------ARR14(2)            <---------ARR11(3)---------   agcaagaaaagggcaaggggatcaccgcttcatctaccttcgatggaatccgattcgtctcgaatgaggctgagaagatgtatgctcatttttcccgaag  11358600  Previous    Next  AGI:  At3g29545.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 11357961    to: 11358108    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g29550.1    Description:  transposable element gene. copia-like retrotransposon family, has a 5.7e-22 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family) Range:  from: 11358134    to: 11359453    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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