Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->ANAC58                                                              <---------ANAC55(2)                                                              --------->ANAC55(2)                                                              --------->ANAC55(1)            <-------                                                      ------>ZmHOX2a(2)               <---------LBD16                                                  <---------YAB1           <---------ETT(2)  --------                                           --------->YAB1     --------->ANAC46       --------->MYB52(1)                   <---------YAB1         <---------AHL20(2)  --------->ANAC58      <-----------GT1     --------->MYB46(3)        <---------LBD16--------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------GT1        --------->AHL20(2)      --------->AHL20(2) <---------LBD16   <xxxxxxxxxxxxxxxxxxxxx -->AHL20(2)---------->DOF2   <-----------GT1<---------YAB1 <xxxxxxxxxxxxxxxxsmallRNA(i)--------->LBD16   ctactgaaccactagaaagttttaatagttttttacggacaaaatttataatatgatcgatatcacggaaactactatcgaccattctaccggataagtg  11290500                                <---------AHL20(2)                             <--------HAHB4                             <---------ICU4                             -------->HAHB4                             --------->YAB1                             <--------ATHB1                             --------->ATHB51                            <---------ATHB51                            --------->ICU4                            --------->AHL20(2)                     <---------AHL20(1)                            <---------YAB1                         --------->ARR11(3)                          --------->YAB1                           <---------ARR11(3)                         <---------YAB1                            --------->AHL20(1)                        <---------AHL20(2)                       --------->ARR11(3)                        --------->AHL20(2)                       --------->AHL20(1)      --------->ICU4  <---------YAB1                             <---------ARR11(3)   ---------->DOF2   --------->AHL20(1)                          <---------AHL20(1)         --------- <---------TOE2(3)  --------->AHL20(2)                       --------->YAB1             ------>ZmHOX2a(1) <---------YAB1     <---------AHL20(2)                      --------->AHL20(2)    --------->ARR11(3) --ANAC55(2)       --------->ICU4   --------->YAB1 --------------->AGL15         <---------ICU4 ->ANAC55(2)--------->At4g35610 --------->AHL20(2)----------------->AG    <---------TOE1(3)--------->YAB1 xsmallRNA(se3)    <---------AHL20(2) --------->AHL20(2)  --------->TOE2(3)<---------At4g35610-------   attaagaaagtattatctgaaattattttaataattaaaaataaatccaattaccaaaaacattaaaaatatttttaagctaattatctcctaaaataat  11290600                                                                                 <---------AHL20(2)                                                                                 --------->AHL20(2)                                                                             <---------YAB1                                                                           --------->YAB1                                                                       <---------AHL20(2)                           ------->TEIL             --------->AHL20(2)<---------YAB1                          <---------ALFIN1          --------->YAB1   <---------AHL20(2)    ------->MYC3        --------->AtLEC2   <---------DAG2          <---------YAB1<xxxxxxxxxxxxxxxxsmallRNA(s)    <-------MYC3    <-----------GT1        <----------DOF2       --------->AHL20(2)                <- >AHL20(2)      --------->AHL20(2)      <-----------GT1          <---------AHL20(2)                -- -->YAB1        <---------AHL20(2)    <-----------GT1           <---------AHL20(2)            <------   aatccatatgctcaacatttttttacatgcacctctcatttttcactttctcaataaaactccaaaattatttttatttataaataaatcccaactcttt  11290700      --------->YAB1   --------->WOX13(1) --------CCA1(2)                                                        <---------ANAC58 ---->ZmHOX2a(1)                                                ------------>CBF    ---------->DOF2 ----DOF2   <-----------GT1      --------->ZAT18        ---------->DOF2 <---------ANAC58 ---------->DOF2   cctatctatcaaattaacccaattttagtttagagagcccaaaatttctaatgagacccaaagtttctcaattttcgtaagggcaaaaaagaaaagtttt  11290800                                                                                                  <--                                                                                                  ---                                                                                      <---------ANAC58                                                                                --------->GLK1(2) ---                                                                            <-----------GT1       ---                                                  *TSS                   ----------->GT1       <-----                   ------>ZmHOX2a(1)       --------->GLK1(1)           ---------->DOF2<---------ANAC58     --------->SPL7<----------DOF2  --------->GLK1(1)                  ==============================   <---------SPL7 --------->TOE2(3) <---------GLK1(1)                 ------>ZmHOX2a(1)  <-----------HVH21   tagaccgtccgattttgaatcctttaatctcttccaagaattctgaattcttctcttcgtagtctttgaatcctaaagtaacaatctttcgtttcagagc  11290900                                                                         --------->HSFC1(1)                                                                         <---------HSFB2a(2)                                                                         <---------HSFC1(1)                                                                         --------->HSFB2a(2)         ----------->HVH21                                           <---------ANAC58       --------->At4g35610                                           <---------ANAC58       <---------At4g35610                                          --------->HSFC1(2) -------TGA1a                                                       <---------HSFC1(2) ------>ANAC58                                                --------->MYB52(1) ------>TGA1a      <---------WRKY12          <---------At4g35610    --------->HSFB2a(1)           <-- ------>ANAC58--------->At4g35610       ------>ZmHOX2a(1)    ------->GAMYB            <---------TOE2(3) ----ZAT18    <---------At4g35610   --------->ARR14(2)      <---------MYB52(2)      ---------->DOF2 =======bZIP_DOF <------ZmHOX2a(1)  <---------ARR14(2)      --------->MYB46(3)  <----------ID1  <----   acgtctgtaagatgacagaggacaacgatgaggctagggttcctctcagcgactcgtctacaacgaacgatgcttctcgaacgagacaaaggtatcaact  11291000                   <---------ICU4                   --------->YAB1                  <---------ATHB12                  --------->ICU4                --------->WOX13(1)            --------->ANAC46                                                              <----------DOF2            --------->ANAC58                                                       <---------ZAT18            ------>MYB83<---------At4g35610   <---------ANAC58                  <---------ANAC58       <-----------GT1  --------->At4g35610   <---------ANAC58                  <---------ANAC58 <--- -------YAB1--------->ANAC58                  <---------ANAC46                 <-------TEIL      ---- ------DOF2 ------>MYB46(1)          <-------TEIL                   <-----------GT1--------->ZAT18   ttcattgtttaaccaagccaattatcagcttcaatctgatacattttttcgtgaaattgacattgagttttaaccattcgattcgtgcccttctttggat  11291100                                                         <----------DOF2                                                        <---------ANAC58                                                        <---------ANAC58             <---------YAB1                                             ---------->DOF2                      ------>ZmHOX2a(1) ------MYB46(3)                    <----------DOF2     ---------->ID1         --------->ARR14(2) ------->GT1                 <---------GLK1(2)    <----------DOF2             <---------ARR14(2)   tgttacttcaactacttcgattttggttttggaatctcttttgtgaataaagcttttggcttttttgatttttgtctctgaatcctcatgtttaggctat  11291200                                                        <---------YAB1                                                 <---------YAB1          <----------DOF2                                           --------->ARR14(2)           <---------ANAC58                                           <---------ARR11(3)           <---------ANAC58                                           --------->GLK1(2)            <---------ANAC46                                           <---------ARR14(2)    <---------GLK1(2)                                           <-----------ARR10   <---------YAB1    <----------DOF2                                          <---------GLK1(2)    --------->ICU4   <---------ANAC58  ----------->GT1               <---------At4g35610   ----------->GT1<---------RAP2.6(2)  -----------  --------->YAB1      <---------ATHB12    <---------ARR14(1) ---------->DOF2    <---------ANAC58   ggtatggtaatctctagtctcttaatcaattttgaactgatagagaatcttatgaattgtgaataaagattgtggcttgtttgcttttggctctgaaacc  11291300                                                                                                   <-                                                                                           <---------GLK1(2)                                                                                  <---------YAB1  <--                                                                                --------->YAB1    <--                                                                                <---------ICU4    <--                                                 <----------DOF2               --------->ICU4  <-----     <---------TOE2(3)                       <---------ANAC58         --------->GLK1(2)  --------->ICU4     <---------TOE1(3)                       <---------ANAC58       <---------HSFB2a(1)  <---------YAB1 >HVH21              <----------DOF2<---------ATHB12                --------->HSFB2a(1)---------->DOF2   tcatgttaaggctctatgctcatctttctagtctcttaatcaattttgcttctttagtttttaactgagaaaattctatgaattatgaataaagattgtg  11291400  Previous    Next  AGI:  At3g29390.1    Description:  RIK (RS2-INTERACTING KH PROTEIN). Identical to Protein RIK (RIK) [Arabidopsis Thaliana] (GB:Q9LIA4;GB:Q32SG0;GB:Q8VZ97); similar to unnamed protein product [Vitis vinifera] (GB:CAO49176.1); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 11290850    to: 11296011    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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