Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-               ---------->DOF2                                                                     --             <---------YAB1                                                                     <----           --------->YAB1     ----------->GT1                              --------->SPL7       <----          <---------ATHB12 --------->DAG2                                <---------SPL7       ------- <---------ARR14(2)    <---------------AGL15                --------->ATHB12 --------->MYB46(3) <---- --------->GLK1(2)----------->GT1   --------->TOE2(3)    ---------->DOF2<---------ANAC58    --------- --------->ARR14(2)   <-----------------AGL1         --------->GLK1(2)  <---------ANAC58   --------->MYB52(1) ----->YAB1<---------ICU4 ---------->DOF2           <---------GLK1(2)<----------DOF2    --------->YAB1   gggaatctacaaatcatgaaaggtaacaaaaagggtaatctcaatttctcaatagaatctaaagattgagactttcgtacccagcgagtgtcataacggc  11167300                                                                        <---------MYB46(3)                                                                       <--------P                                                                       <---------WOX13(1)                                                                      <-------GAMYB                                                                  --------->CCA1(2)                                                                  --------->ARR14(1)      <---------At4g35610                                        <---------ARR11(3)      <---------ZAT2     <----------DOF2                         <---------ARR14(2)      --------->ZAT2    <---------ANAC58                         --------->ARR14(2) --------ZAT14          <---------ANAC46           --------->MYB52(1)<------MYB46(1) ------->REM1(2)        <---------ANAC58          ------->GAMYB  --------->ARR11(3) -----ANAC58       <---------ANAC58              --------->MYB46(3)  <------MYB83 -----ANAC58       <---------ANAC58              <---------MYB52(2) <---------AtMYB61 >GAMYB            --------->ALFIN1            --------->MYB52(1)--------->ARR11(1) -----ANAC46  <---------HSFB2a(2)     <------ZmHOX2a(1)        ----------->ARR10                    < >RAP2.6(3)   --------->HSFB2a(2)   <---------TOE2(3)     ---------->DOF2          <------ZmHOX2a(1)<   gtgaacagagctggttccagagcgtggctttgatggctgaggaagagaacaacgaacagagaaagaagatttggttgatggaagaggaagaagagtggaa  11167400              <---------YAB1           <-------TEIL                               ======================HOX2a_HOX2a           ----------->GT1                   ------>MYB83          =====================MYC_MYB     --------->AtMYB61          <--------P --------->ANAC46      <---------MYB55(2)       <---------TOE1(3)                   --------->MYB46(3)        ------>ZmHOX2a(2)       <---------AtMYB61    <---------MYB46(3)        =====================HOX2a_HOX2a       <---------TOE2(3)   <---------AtMYB61 ------>MYB46(1)        <------ZmHOX2a(2)   ============================MYC_MYB   ------>MYB46(1)           <-----------ARR10   <-------GAMYB     <---------TGA1a     ------>MYB83 <------ZmHOX2a(1)         ----------->TGA1  --------->ALFIN1   <---------O2       --------->ANAC46           --------->ARR11(3) ---------ANAC58     --------->TGA1a   --------->MYB46(3)          <---------ARR11(3) ---------ANAC58     --------->O2     --------->DEAR3(2)  ----------->RAV1(1) --------->YAB1     ----   atgggtgttgaggttgataattcacgtcgatggtcgaagaacccaccaatcgcagaggagcaacaagacgatctcatcaacaatgacgcttccattgatg  11167500                                                            <---------ICU4       ----------->GT1                                             <------ZmHOX2a(1)         <------ZmHOX2a(1)                ----------->GT1           --------->At4g35610    --------->At4g35610            <---------ARR14(2)       <---------GLK1(1)      --------->YAB1      <---------ARR11(3)  <           <------ZmHOX2a(1)         --------->GLK1(1)    --------->GLK1(2)     --------->ARR11(3) <-    --------->MYB52(1)          ----------->GT1      ---------->DOF2--------->At4g35610        ------ ------->GT1----------->HVH21<------ZmHOX2a(1)   <----------ID1  <---------At4g35610  ---------->DOF2   tgaaaaaaacagaggagacggagaaaacagaggattgagaaatcagaggaagagacaaagaatcatgagcagaggaatgagagatgttaaaagggattgt  11167600               ----------->GT1               <------MYB83             --------->ALFIN1         <---------ZAT14         --------->ZAT14         --------->ZAT18         <-------TEIL      <------MYB46(1)      <------MYB83     --------->MYB46(2)     --------->MYB111(2)     <---------DEAR3(1)     --------->MYB59                                                     --------->ANAC46    --------     <---------AtMYB61                                                   --------->ANAC58    --------     --------->MYB52(2)                                                  --------->ANAC58 --------->ANAC58     --------->MYB111(1)                                                ------->TEIL      --------->ANAC58     <---------MYB46(3)                                               <---------ZAT18   ---------->DOF2     --------->MYB55(2)                                            <---------ANAC46   --------->ANAC58    <---------MYB55(1)          <------MYB46(1)              <---------ANAC46<----------DOF2<--------    <--------P <------MYB46(1) <---------MYB46(3)           ----------------------->TaNAC69(2)   ----  ------------>AtMYB84  ---------->DOF2              *TSS<-------GAMYB--------->ZAT18 --------->ANAC58 ---------ANAC46  ---------->DOF2                   --------->REM1(2) <---------ZAT14 --------->ANAC46 --------LBD16<---------MYB46(3)<------MYB83       --------->ALFIN1<---------ANAC58<---------ZAT18 --->ATHB12<---------ANAC46   <--------P         <---------ANAC46  <---------ANAC58--------->ZAT18   ttgggggtaggtgcagtgggtaaagagaaagagttggtgagagagggagagatgtgtagggttgtgtctgcgtgcacgtctttagcccacgaaagccaca  11167700                                                                      <---------AHL20(2)                                                                    <---------YAB1                                                                   <---------AHL20(1)                                                                  <---------ICU4                                                                 <---------YAB1                                                                 --------->ICU4                                                               --------->YAB1                                                               -------->ATHB1                                                               <---------ICU4                            <------------------------ANAC81    <--------HAHB4                         <----------DOF2                      --------->ICU4 ->RAP2.6(2)            <---------DAG2                        <---------ATHB12 --->RAV1(1)          <---------ARR11(3)                    --------->WOX13(1) --ID1              ----------->HVH21                <---------AHL20(2) ------>DOF2      --------->YAB1<-----------GT1      --------->AHL20(2)   aaagtgtttctgttctgttctcatgacctttttttttctattttgtgttctctcattaatttcaatcattatttttatgttcaagttgttttataactta  11167800                                                   <----------DOF2                                              <-------TEIL                                    --------->AHL20(2)                                    --------->AHL20(1)                          <---------YAB1  <---------YAB1                      <---------AHL20(2)  <---------TOE1(3)                    --------->AHL20(2)    <---------TOE2(3)              <-------TEIL            ----                    <---------AHL20(2) <---------AHL20(2)        <---------AtMYB61   <<<<<<<<<ARR2<-- <---------DAG2     <---------YAB1  <---------AHL20(1)       <---------AHL20(2)      <---------ATHB12 <----------DOF2   --------->YAB1   <---------ARR11(3)     <---------AHL20(2)      --------->WOX13(1)   caactttaccaaagtttagaatattaatatgaaaacaatattttaagattcaactttgtatatttttttggtcgatacatagaaacaatcaaacaaggat  11167900                          -------->P              --------->AHL20(2)             --------->AHL20(1)                                                                 -----             <---------AHL20(1) --------->YAB1                                       --------->At5g28300          --------->AHL20(2)   <---------ATHB12                                     ----------->GT1  <-----------GT1   <---------AHL20(2)        ---------->DOF2          <---------ANAC46     <-------- ----->AHL20(2) --------->AHL20(2)     ---------->DOF2<---------AHL20(2)          --------->ZAT14 -------AHL20(2)<---------AHL20(2)--------->CCA1(2)   --------->AHL20(2)          <---------ZAT14   <   taaataactacataatatatatataaactaccaatgatatgaaaagaataaagaatttaaatatgaacaaatagtgtatagaagagcagtgaattatcct  11168000                             <-----------GT1                                                      <--                          <---------AHL20(2)                                                      <--                          <---------ICU4                       <---------RVE1(1)                 ----                         --------->AHL20(2)                    <---------CCA1(1)                 <---                         <---------AHL20(2)                   --------->ARR11(3)                 ----                      --------->AHL20(2)              <---------ZAT14                  --------->AHL20(2)                     <---------YAB1                   --------->ZAT14                  <---------AHL20(2)                   -------->ATHB1                 --------->ANAC46                 <---------ANAC46                   --------->YAB1                 --------->ANAC58                 ----------->GT1---                   <--------HAHB4                 --------->ANAC58        <---------AHL20(2)    ----- ->ZmHOX2a(1)      <---------ICU4                --------->LBD16          --------->AHL20(2)<-------- ---GT1            --------->ATHB51            --------->MYB46(3)         --------->AHL20(1)--------- ----------DOF2   --------->ICU4           --------->MYB46(3) <---------ARR11(3)  <xxxxxxxxxxxxxxxxxx   ctctttttctaacgtcttgaattattatttattacaaactaggtaatcacccgcgctacgctgggatattttcaaattttttgtatcgtttaatttaaat  11168100         <---------AHL20(2)               <---------YAB1         --------->AHL20(2)             <---------AHL20(2)         --------->YAB1                 <---------ICU4     <---------AHL20(2)                 --------->AHL20(2)     --------->AHL20(2)                 --------->ATHB51           ------>ZmHOX2a(1) --------->ICU4                        --------->ICU4             <---------MYB59 -------YAB1               --------->ANAC55(2)            --------->AHL20(1) -------AHL20(2)           <---------ANAC55(2)            --------->ARR11(3) ----->AHL20(2)      <---------AHL20(2)<---------YAB1     <---------AHL20(1) ------AHL20(1)  <--------HAHB4     --------->AHL20(2)    <---------ARR11(3) ----->AHL20(1)  --------->ATHB12   <---------AHL20(2)  <---------AHL20(1) ------>AHL20(2)--------->ICU4    <---------ANAC55(2)   --------->AHL20(1) ---->YAB1      <---------YAB1    --------->ANAC55(2)   <---------AHL20(2)                      ----- -AHL20(2)    --------->YAB1      ----------->GT1    <---------AHL20(2)                         ----- >AHL20(2)   <---------AHL20(2)  <---------ICU4      --------->AHL20(2)                         ----- xxxsmallRNA(le3)<---------ICU4 --------->ICU4   <---------ZAT6<-----------GT1    xxxxxxxxxxxxxxxxxxx   ataatttttaattatataatcatttacttatgtaataagtaattatttttagtattaaaatattttttcctaacaacattttcaacaatgcattatacac  11168200  Previous    Next  AGI:  At3g29200.1    Description:  CM1 (chorismate mutase 1); chorismate mutase. Identical to Chorismate mutase, chloroplast precursor (CM1) [Arabidopsis Thaliana] (GB:P42738;GB:Q9LS75;GB:Q9SUJ5); similar to CM3 (CHORISMATE MUTASE 3), chorismate mutase [Arabidopsis thaliana] (TAIR:AT1G69370.1); similar to putative chorismate mutase [Fagus sylvatica] (GB:ABA54871.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701); contains InterPro domain Chorismate mutase of the AroQ class, eukaryotic type; (InterPro:IPR008238) Range:  from: 11165630    to: 11167653    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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