Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <-----------RAV1(1)                                                     --------------->AGL15                                                    <---------ANAC58                                               --------->ATHB12                                  <---                          --------->O2      <---------ICU4                                       ----                          <---------O2      --------->YAB1                                      <----                          <---------bZIP60(1)  <---------ICU4         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->bZIP60(1) <---------YAB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      --------->DEAR3(2)  --------->GLK1(2)       --------->YAB1       xxxxxxxxxxxxxx                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------------AGL15            --------->ANAC46                ----------->GT1       --------->YAB1<---------ANAC58<---------YAB1 --------->ARR14(2)             ---------->DOF2  <---------DEAR3(2)    <---------ANAC55(2)            --------->ZAT14         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ICU4  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<--   tttgggaaaacaaaacaaaggtgaaacgacgtcgtttcaagaagaatcatgattacttatgtgggtaatcgtaattgtggaacagtaaacgcgattttgt  11149100         <----------DOF2                                                                     <-------  <-----------GT1       --------->ATHB12  <---------HSFB2a(2)                                -------- ------MYB46(3)        <---------AHL20(2) --------->HSFB2a(2)                         <---------TOE2(3) ------->GT1           --------->AHL20(2) <---------LBD16                            ---------->DOF2 -----TOE2(3)      ----------->GT1  --------->ARR14(2)       <-----------GT1       <---------YAB1 xx>smallRNA(i)<-----------GT1      <---------ARR14(2)   --------->AHL20(2)<---------HSFB2a(2) -----GAMYB --------->YAB1      <------NtERF2     ------->TEIL             --------->HSFB2a(2)-------   ggttaaacccgctttaataactagtttaattggaggcatattttctcggatgaatccaaaaatatacaatatttgtttcagaaatattaaagttgatgat  11149200                                          <------MYB83                                          <------MYB46(1)                                        <--------P                                     <---------TOE2(3)                                     <---------TOE1(3)                                --------->AHL20(2)                                <---------AHL20(2)                                --------->AHL20(1)                --------->ANAC46      --------->ANAC46     <---------YAB1 ----------->GT1        <-------TEIL --YAB1          --------->ANAC46    --------->MYB59      --------->TOE2(3)               <---------ANAC58 ->ICU4         <-------TEIL   <---------AHL20(2)         --------->TOE1(3)      <---------AHL20(2) < -->ATHB12  <---------KAN4(2)  --------->AHL20(2)      <-----------GT1     <-----------GT1<---------ANAC58   tgtatttcacgaagaatatacatcagtttataaataatttaggttggaaaattcaaaaaaccttatatacatcagttttacatttttttttttcgtccag  11149300                                       <---------AHL20(2)                                       --------->AHL20(2)                                      --------->AHL20(2)                                      <---------AHL20(2)                                   -------->ATHB1                                   --------->ATHB51                                   <--------HAHB4                                   --------->YAB1                 <---------AHL20(2)                                   --------->AHL20(2)             <---------AHL20(1)                                   <---------ICU4              --------->YAB1                                  <---------ATHB12     <---------ICU4                                  <---------ATHB51     --------->YAB1                                  --------->ICU4      --------->ICU4     ------>MYB83                 <---------YAB1      <---------YAB1       <---------DAG2     ------>MYB46(1)        --------->MYB59         --------->YAB1--------->AHL20(1)   <---------MYB59        --------->ICU4           <---------YAB1 --------->AHL20(2)   <---------MYB46(2) --------->At5g28300  <-----------GT1    --------->AHL20(2) <---------At5g28300 ----------->GT1 <---------YAB1--------->AHL20(2)      <----------DOF2       ---- -----------GT1  <---------YAB1 --------->WOX13(1) <---------AHL20(2) <-----------GT1 --------->AHL20(2)   ttttaccgaacttactgctatgactgtaattaggcaattattaatttactcatataattatcaaataataaattacgcttttttaaaaaaaaatcgtttt  11149400                                          ----------->HVH21                                        --------->At4g35610           <---------AHL20(2)<-----------ARR10           --------->AHL20(2)--------->GLK1(2)      *TSS------>ZmHOX2a(1)          --------->ICU4  --------->ARR11(3)        --------->ARR14(2)    <---------------AGL15          <---------ATHB12<---------ARR11(3)        <---------ARR14(2)    <----------DOF2      ------------>CBF   --------->YAB1 ----------->RAV1(2)              --------->TOE2(3)      <---- ------->GT1          ---------->DOF2   <---------At4g35610   <----------DOF2      ---------->DOF2  -   ggtaattttgcaattaataaaacccaaagataatcttctctcccctgactctcgtttcctctctctttctctcttcctttacagagaaagcagagagaga  11149500                               --------->LBD16                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                           --------->ARR14(2)                  <-----------HVH21                  --------->LBD16                 <---------ANAC55(2)                 <---------ANAC58                 --------->ANAC55(2)                                                     <---------TOE1(2)              --------->ARR14(2)                                                        --------->LBD16        --------->ANAC58   <---------ARR14(2)                                           ------>ZmHOX2a(1)        --------->ANAC58 --------->LBD16                          <------------------------ANAC81      ---------->DOF2  <---------LBD16                          <---------CCA1(2)      <---------LBD16 --------->MYB52(1)----------->HVH21                         ------>ZmHOX2a(1)        ----------->RAV1(2) ------ID1    <---------ARR14(2)                   --------->GLK1(2)              <<<<<<<<<TBF1 --------->DOF2  <---------ANAC58  --------->ICU4  <---------ARR11(3)          <<<<<<<<<TBF1   gacaaagggaaagctaaatccgtgacccggatccgaaataatcgggttttcaaaatctaattcctcttatcttctctcttcttcttcttcctgggttctt  11149600                                                                    --------->GLK1(2)                                                                   <---------ARR11(3)                                                                   <---------GLK1(2)                                                                 <---------YAB1                                                               --------->YAB1                                                              <---------ATHB12                      <                               <----------DOF2              ------>MYB46(1)                         -                           <---------ZAT18                  ------>MYB83              <---------ALFIN1                          --------->DEAR3(1)              <---------MYB46(2)        =================                         --------->ATERF1(1)              <---------MYB59           =================                      <---------ZAT18                     <---------MYB111(1)       ------>ZmHOX2a(1)                      --------->ZAT18                    --------->ANAC55(2)--------->AHL20(2)      <                 ---------->DOF2    --------->YAB1  <---------TOE1(2)       <---------AHL20(2)      <             --------->TOE2(3) <---------DAG2      <-----------RAV1(2)    <----------DOF2          <-   cccaaaattcaatttcattaaaagggcactgccctttatcatgcctaaaattctcaggtacctaatcaagattcttctttaaattcctccacattgtgtt  11149700               --------->At4g35610               <---------At4g35610        <---------YAB1  ------>ZmHOX2a(2) <------ZmHOX2a(2)                               --------->DAG2 ---------AGP1--------->ANAC46  <---------ARR11(3) -------->ARR14(2)            <---------YAB1    ---------->DOF2 ========HOX2a_HOX2a        --------->YAB1  <-------TEIL =======HOX2a_HOX2a--------->ANAC55(2)    <---------GLK1(2) -----------ARR10  <---------ANAC55(2)    --------->ARR11(1) ---------ARR14(2) <---------ANAC46 <---------YAB1                                          --------- --------CCA1(2)<---------MYB52(1)------>ZmHOX2a(2)         <----------DOF2       <---------YAB1   <-   cggatctattctaattccgctacgtatgaaacatgatcgtcatagattcgtaaagtttgagtcttttttttttggtagtgtctgattatttgaataaagt  11149800                                                                                                   --                                                                                                <----                                                            <---------TOE2(3)                  <-----                          ------>ZmHOX2a(1)        <---------TOE2(3)                      --------->ARR11(3)      <---------AHL20(2)<---------ANAC58          --------->YAB1     <---------bZIP60(1)<---------TOE2(3)     <---------YAB1     <---------ANAC58        <---------WOX13(1)   --------->bZIP60(1)<---------TOE1(3) ->DOF2                 <---------ANAC46     <---------YAB1 <---------TOE1(3)     <---------YAB1----- --------YAB1<---------YAB1               <-----------GT1 ----------->TGA1    <---------AHL20(2)-----   tttgatttttatttgatgattctgtttcctgttttcaacgtttttttctcattgatgatgttgacgttatgaagtcatatttttatgtttaagatttgta  11149900                              <------MYB83                              <------MYB46(1)                              <---------MYB46(3)                             <---------AtMYB61      --------->ATHB12      <--------P                       --------->ARR11(3) ---------->DOF2          <---------ZAT6                     <---------ARR11(3) --------->HVH21      <---------ATHB12         --------->GLK1(1) -----ARR14(2)      --------->WOX13(1)         <---------ARR14(2) ----CCA1(2)       --------------->AGL15       --------->ARR14(2)                                <--- ---->ARR14(2)  <-----------GT1    ----------->GT1         <---------TOE2(3)<---------ZAT14 <-------- -->TEIL<---------WOX13(1)<-----------RAV1(1)  <---------GLK1(1)       <---------YAB1 <---------YAB1   tctgaaagtgattgaattttaccaattagtgttggttttgttatttgagaattctctgtttgagatttttcttatgagtatagtttttaatattgagatt  11150000  Previous    Next  AGI:  At3g29180.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15029.1); contains InterPro domain Protein of unknown function DUF1336 (InterPro:IPR009769) Range:  from: 11149452    to: 11152797    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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