Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------------->AGL15              --------->ANAC58                            --------->ARR11(3)             ------>MYB83            --------->LBD16                               <---------ARR11(3)           ------->GAMYB           --------->ANAC46                             --------->ICU4                 --------->AtMYB61          --------->HSFB2a(2)                           <---------YAB1                 <---------MYB59       <---------ARR14(2)                          --------->bZIP60(2)                --------->MYB46(3)       --------->ARR14(2)                          --------->ANAC58                  -------->P       <---------PCF2                          ------>NtERF2 <---------------AGL15   --------->ANAC58     <---------MYB46(3)                       <----------ID1------>ZmHOX2a(2)        --------->ANAC58  <-----------RAV1(1)   <---------MYB46(3)    --------->ANAC58                   --------->ANAC58 <---------ARR14(2)    <---------AtMYB61      --------->ANAC46                   --------->ANAC46 -------ANAC46--------->ANAC58                --------->RAP2.6(2)                --------->ANAC58 -RAP2.6(2)--------->LBD16                    --------->ANAC58            ----------->HVH21 -->HVH21 <---------HSFB2a(2) --------->MYB52(1)   --------->ANAC58    <---------MYB46(3)------>MYB46(1)   gcgtatgtggttcccgaagcaattggtggtccaaacggtttcaccaagacgccaagtcatgatctcaaaatagtagttgacacaagcaaccaaacaacta  11110000                           ----------->HVH21                         --------->ANAC58                         --------->ANAC58                         --------->ANAC46     --------->At5g28300                    --------->ANAC58       --------->At4g35610            --------->At4g35610           ------->GAMYB            --------->ZAT2--------->LBD16--------->MYB46(3)            <---------At4g35610         ------>MYB83          <---------DEAR3(1)            ------>MYB46(1)                  ----------->GT1      -------          <---------RAP2.6(2)           ---------->DOF2              ---------->DOF2          <------         <---------At4g35610           ----------->RAV1(1)      --------->LBD16              <-------         --------->At4g35610----------->RAV1(1)<--------P      <---------ANAC46        <---------ICU4       <------ZmHOX2a(1)<---------LBD16--------->MYB52(1)     <---------LBD16       --------->YAB1  <---------REM1(1) --------->ANAC58 ----------------->AGL1 ----------->HVH21   ---------->DOF2 ----- <---------TOE2(3)---------->DOF2    <-----------------AGL1<-----------HVH21  <---------TOE2(3)------   gttgatgtaggagcggctgagaaagccccgcaacagggtaccaacagcggtaagtagacgcgctcacgggtaaaagggttaagaaagaataatgccccgg  11110100                                <---------YAB1                               --------->AHL20(2)                          <---------ATHB12                          --------->MYB46(3)                         ------>MYB83                                                       <--------                         ------>MYB46(1)                                                    <--------                         -------->P                    --------->ANAC58                --------->ATHB12   --------->YAB1     --------->MYB46(3)               --------->ANAC58              <---------WOX13(1) -->LBD16             <---------MYB52(2)              ------>NtERF2         <---------ANAC58<-------- ---LBD16            --------->At4g35610   <------ZmHOX2a(1)                <---------ANAC58--------- --LBD16         --------->ANAC58        <---------TOE2(3)      --------->LBD16    --------->ATHB12-- ---->LBD16      --------->ANAC46       --------->MYB52(1)     <---------LBD16    <---------YAB1   <- --->LBD16       --------->ANAC58--------->YAB1<---------AHL20(2)           <---------ANAC46<--------   ggtaatcatattttgacacaagcagccaaccatttttataactaaggaatttatggcaccctaaccctggaaactcttgcttatatgattgatttcgtaa  11110200     ---------->DOF2                            --------->LBD16 -ANAC58                                    <---------ARR14(2) -ANAC58                                    --------->ARR14(2) -ANAC55(2)                               ---------->DOF2 >ANAC55(2)                            ----------->GT1                               <---------bZIP60(2) --------->GT1               --------->ALFIN1 <---------LBD16           --------->DAG2      --------- ---------ID1  <------MYB83  <---------ZAT6<---------GLK1(1)           ---------->DOF2     ---------- -ANAC46       <------MYB46(1)       <------ZmHOX2a(2)       <----------DOF2       <------ZmHOX2a(1)   tgggtcaaaaagaatgtaggtttcacaaggagtgttgggatcagtaaatccgcgagatgagcgttttagtggataaagcagccaaggacgaggctgtaac  11110300                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              <------                                                                                             --------                                                                                            =========                                                                                         <-----------RAV1(2)                                                                                       ==============                                                                                       ==============                                                                                       ------>ZmHOX2a(1)                                                                                       ==============                 <-----------HVH21                  <-----------RAV1(1)              ----------->RAV1(2)            <---------At4g35610               <---------ANAC58                   --------->ARR14(2)            --------->At4g35610        <---------LBD16                           --------->ARR11(3)   <<<<<<<GRF7 --------->At4g35610     <---------At4g35610                       <-----------ARR10 ------>ZmHOX2a(1)           <---------ANAC46 <---------ANAC58                   <---------ARR11(3) ----------->HVH21   --------->ANAC46  --------->At4g35610                       <---------ARR14(2) >At5g28300 <---------ZAT2   <---------ANAC58--------->HSFC1(2)           ----------->HVH21 <------ZmHOX2a(1) ->GT1      --------->ZAT2   <---------ANAC58<---------HSFC1(2)      <xxxxxxxxxxxxxxxxsmallRNA(s)----   ttcctgacagaagcagctgcttcacaccatgacttgcagacagcggaagcttgtatgttggctcttaactcaagacgggacagtatctcctgcaggagat  11110400     --------->GLK1(2)     <---------ARR14(2) ---->CCA1(2) --ZmHOX2a(2) ----AGP1 --->AGP1 --->ARR11(3) ----ARR14(2) ----ARR14(3)                  *TSS ----ARR11(3)               --------->ANAC55(2)                                                  <--- --->ARR14(2)               <---------ANAC55(2)                                                  ---- -->GLK1(1)            ------->GAMYB                                                            <---- ---GLK1(1)          --------->ZAT14                           ------>ZmHOX2a(2)          ----------- --->ARR10          ----------->RAV1(1)                       <------ZmHOX2a(2)         --------->At4g35610 =====================HOX2a_HOX2a                            --------->ARR11(3)         <---------At4g35610 ===HOX2a_HOX2a    --------->ANAC46                   <------------CBF  <---------ZAT6 ------->TEIL =====================HOX2a_HOX2a            <<<<<<<<<TBF1<---------TOE2(3)      <-----------GT1<---- ==HOX2a_HOX2a   --------->ANAC46         <<<<<<<<<TBF1<---------WOX13(1)     <---------YAB1--------- -->ZmHOX2a(2) ------>ZmHOX2a(2) <-----------GT1<<<<<<<<<TBF1<---------ARR11(3)--------->YAB1<-------   ctgagggaatcttttgatcccacaacagtcatgtattacacttcttcttcttcttcgattgacgatctcttctagtgtttattatactgcatctgacaat  11110500                                                                                                    <                                                                                                    -                                                                                                <----                                  --------->YAB1                                                -----  <----------ID1            <---------TOE2(3)                                               --------- ------ICU4            <------MYB46(1)                                                      <-------- ----->YAB1            ----------->GT1                                                     <---------TOE1(2) -----ATHB51           <---------MYB46(3)                    <---------TOE2(3)    <----------DOF2 <-- >HVH21             <------------CBF                   <---------YAB1             --------->TOE2(3)<- -----YAB1   --------->GLK1(2) <---------GLK1(1)      <-----------HVH21 --------------->AtSPL8 <----- --->CBF --------->YAB1<------MYB83                <---------O2         <---------------AtSPL8<------ --------AGL15     <------ZmHOX2a(1)               --------->O2       <-----------RAV1(1) <---------MYB52(1)   tatagcaacaaggagaatataggattggttaagaaatcacaatggaattggacacttgtcattgatgttccaatgttgtacatactttaatcgttcgttc  11110600      --------->AtLEC2 ---------MYB46(3) -------->MYB52(2) -----MYB46(3)                      ------->GAMYB ---->MYB52(2)         --------->TOE1(2)                                     ======================== >MYB52(2)             --------->TOE2(2)                                     ---------->DOF2 -MYB46(3)            --------->ANAC58                                   <---------YAB1 -------MYB52(1)      ----------->GT1                                <---------ARR14(2)            <- --------TOE1(2)      <---------ANAC55(2) --------->TOE2(3)    --------->TOE2(2)         <---------ZAT6 ----TOE1(2)          --------->ANAC58   <---------ZAT6        --------->TOE1(3)         ----------->GT1 ---MYB52(1)----------->GT1         --------->TOE2(3)          --------->TOE1(2)   <------ZmHOX2a(1)   gttcgttcatgcatcagtaaaaaaacgtaagaacacaaccctagtcttaattcagagaccataaaccttcgaattctgataaagaggaatagagataaat  11110700                                                                            <------NtERF2                                                                            <---------MYB52(1)                                                                           ------>NtERF2                                                                           <---------RAP2.6(3)                                                                          --------->ATERF1(2)                                                                          <---------DEAR3(1)                                                                          <---------ATERF1(2)                                                                         --------->ATERF1(1)                                                                         --------->RAP2.6(3)                                            --------->LBD16             <---------ATERF1(1)                                          <---------ANAC46              ------>NtERF2                                          <---------LBD16              <---------SPL7                                         <---------LBD16              <---------RAP2.6(2)                                      <---------ANAC58               --------->At4g35610                                      <---------ANAC58               <---------At4g35610                                  <---------ANAC58               --------->ANAC55(2)                                  <---------ANAC58               <---------ANAC55(2)                                <---------MYB52(1)               <---------ANAC58          <---------ATHB12        --------->TGA1a        <-----------HVH21         --------->ALFIN1--------->SPL7   --------->ARR14(2)        <---------TGA1a     <---------At5g28300        ------->GAMYB--------->MYB52(1)    <---------ARR14(2)        --------->ANAC58   <---------WRKY38(1)      --------->MYB52(1)--------->ATERF1(1)--------->WOX13(1)        --------->ANAC58   <---------WRKY12--------->LBD16       <---------ANAC58<---------ZAT14 =================bZIP_DOF----------->HVH21<---------LBD16       <---------ANAC46--------->ZAT14 -----ZmHOX2a(1)         <-----------HVH21--------->HSFB2a(2)<---------GLK1(1)  <---------ZAT6   <---   aggaatactcacgactgcatcattctcggtcaccgtgagtgcttccggggaaaacaacggtggagttgcgtagcggccggcagtgtaatgccaatcttcg  11110800                                                                                                   <x                                                                                                 ----                                                                                                 <---                                        ----------------->AGL1             <---------ANAC58    <-----                                        ----------------->AG               <---------ANAC58    <-----                                       <-----------------AGL1              <---------ANAC46    <-----                                       <-----------------AG             <---------ARR14(2)     <-----                                <-------GAMYB                           --------->ARR14(2)    <------                               --------->MYB52(2)            <---------ARR14(2)              <-------                           <---------ANAC58                  --------->ARR14(2)          <---------ANAC58                           =============MYC_MYB     <---------ARR11(3)<------MYB46(1)    <---------ANAC58                           <---------ANAC58         --------->ARR11(3)<------MYB83      <---------LBD16                           --------->TGA1a      --------->At5g28300  --------->MYB59   <-----------GT1 ------MYB52(1)            <---------TGA1a     ----------->GT1      <-------TEIL    <---------DAG2 <-   gtaattcacttctaccgagaatgatgcagtcgtgagttgttttccaatagggtaaatctttcggttcgggttcggtttcgggtccaatttttcgggtcgg  11110900  Previous    Next  AGI:  At3g29150.1    Description:  pseudogene of F-box family protein Range:  from: 11109550    to: 11110431    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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