Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------TOE2(3)                     --------->ANAC46                  <---------ZAT14                  --------->ZAT18                  --------->ZAT14                                                            --------                  <---------ZAT18                                                    --------->CCA1(2)                  <-------TEIL                                              --------------------->WRI1              --------------->AtSPL3     --------->RVE1(1)                  <----------DOF2  <-------          --------->At4g35610      ----------->GT1                   <-------TEIL   <---------ARR14(2)          <---------At4g35610 <------ZmHOX2a(1)              --------->At4g35610    --------->ARR14(2)   atcaagagcattagctgaagtacacacactaaggaaattgaaaatacctccatcaagagcaatagctgaagtacatttctttgagagatttgcagaaatc  11078400                               <---------WRKY18(1) --------->AtMYB61                <---------ARR11(3)                --------->MYB46(3)                --------->ARR11(3)          --------->HSFB2a(2)                         <----------ID1                <---------ARR11(1)          <---------HSFB2a(2)                       --------->YAB1    --------->ZAT14         --------->TOE2(3)--------->LBD16              ------>ZmHOX2a(1) ->GLK1(1)     <---------CCA1(2)           <---------LBD16        --------->YAB1--------->GLK1(2)   - --GLK1(1)   --------->YAB1 --------->TOE1(3)--------->ANAC46   --------->AHL20(2) --------->WOX13(1)   tcacagtattgtctctcatatctttcgaaaccttgactcatcgttcccagaaaccactacttgctaaaaaataatcctgcagaatcaattacaacaaaaa  11078500                                                      ---------->DOF2                                           ----------->GT1             --------->ARR11(3)            --------->ANAC55(1)       <---------AHL20(2)                  --------->ANAC55(2)       --------->AHL20(1)                  --------->ANAC58       --------->AHL20(2)                  <---------ANAC55(2)      <---------AHL20(2)         --------->ANAC58    <---------AHL20(2)      --------->AHL20(2)       <<<<<<<ZML2 --------->ANAC58     ----------->GT1 ---------->GT1------>ZmHOX2a(2) --------->ANAC58<---------AHL20(2)          <---------DEAR3(1) -----   atcagtaaataatttgatctctaaaacaacctagaacgcataaacacgtataaatttaaaggggaagagaaaattaacatcggcgaaattaggggagatt  11078600                                                                                                    -                                                                  ------>ZmHOX2a(2)              <---                                                                 <------ZmHOX2a(2)              -----                                                                 --------->ARR14(1)             <----                                                                 --------->CCA1(2)              -----                                                                --------->ARR14(2)             ------                                                                <---------ARR14(2)             ------                                                                <---------ARR11(3)             <-----                                                                --------->ARR11(3)             <-----            ---------->DOF2        =====================================HOX2a_HOX2a           -------        <----------ID1             <------ZmHOX2a(1)  --------->GLK1(2)                     ---------      ---------->DOF2 ---------->DOF2                <---------GLK1(2)      ------>ZmHOX2a(2) <------ ---->AHL20(2)  --------->ALFIN1  <---------YAB1 ---------->DOF2--------->AGP1             ------->TEIL   aaacatgttaaagacaaagtggaagaaagaaagattaggatagacgaagggaaaagaatcttacaagatccgaatcgatctgtagagaagatgaacgccg  11078700                             --------->LBD16                            --------->TOE1(2)                           ------>ZmHOX2a(2)                           <---------LBD16                          <------ZmHOX2a(2)                          --------->ARR14(1)                          --------->CCA1(2)     ------->GAMYB       --------->ARR11(3)    --------->ANAC55(2)  <---------ARR14(2)    <---------ANAC55(2)  --------->ARR11(1)  <---------DOF5.7(2)    --------->ARR14(3)  --------->MYB52(1)     <---------ARR14(3) -------->DOF5.7(2)      --------->ARR14(2) ---NtERF2               <---------ARR11(3) ->NtERF2                --------->AGP1          ----------->GT1                          <---------ZAT18 -----ATERF1(1)         <---------GLK1(1)      <---------ZAT2                  <---------YAB1 ---->LBD16             --------->GLK1(1)      --------->ZAT2                *TSS         --------->ZAT18 --->DEAR3(1)          ---------->TaMYB80      --------->ZAT14        <---------YAB1  <---------ICU4 --->ATERF1(2)         ----------->ARR10       <---------ZAT14     <---------YAB1   <------------CBF ----DEAR3(1)      <---------LBD16         <---------ANAC55(2)  <---------RVE1(1) <---------YAB1----- ----ATERF1(2)    <---------ANAC46         --------->ANAC55(2) <---------ARR11(3) <---------AHL20(2) -->ATERF1(1)     <---------bZIP60(2)     <---------LBD16      --------->ARR11(3)--------->AHL20(2) >ANAC46       ----------->TGA1         --------->ICU4         <---------GLK1(2) <---------AHL20(2) - ---LBD16      ----------->HVH21   ----------->GT1    --------->ICU4<---------AHL20(2)<-----------RAV1(1)   gcgataacggaatgtggatgacggggagatccggcgaatgtaattacggagcagtgaaaattagagatttttattttagttattttaattgttgcactaa  11078800                                                                                                 <---                                                                                               <XXXXX                                                                                              <------                                                                                             --------                                                                                           --------->ICU4                                                                                         <--------ATHB1                                                                                         <---------ICU4                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(1)                                                                                         <---------AHL20(2)                <---------TOE1(3)                                                        --------->YAB1                --------->MYB59                                                         --------->ICU4          <---------AHL20(2)                                                          --------->YAB1         --------->AHL20(2)                                                          <---------AHL20(2)     --------->AHL20(1)         --------->AHL20(2)                                   --------->AHL20(2)     <---------AHL20(1)        --------->AHL20(2)                 <------ZmHOX2a(1) --------->AHL20(2)    --------->AHL20(2)   XXXXXXXXXXXXXXXXXXX>MIR157D            <---------TOE2(3)   <---------AHL20(2) ----->DOF2     <---------TOE2(3)                        ---------->DOF2         --------->AHL20(2) - -------->AHL20(2)     XXXXXXXXXXXXXXXXXXXX>MIR157A-C---------->DOF2       --------->GLK1(2)<--------   aagaaaatatataaaatttaggtttgacaaaaaataaaaaacttgcaacttattcaaaagaaagttgaggaatagaaattctataaattaataattttta  11078900     <---------AHL20(2)     --------->AHL20(2)                                     <---------AHL20(2)    <---------AHL20(2)                      --------->AHL20(2)    --------->AHL20(2)                     --------->AHL20(2)        <---------YAB1  --------->TOE2(3)                  <---------AHL20(2)    --------->AHL20(2)                      -- ------YAB1    <---------RVE1(1)    --------->AHL20(1)     <---------AHL20(2)                      <- XXXXXXXXXXXXXXXMIR1888        --------->AHL20(2)      <---------AHL20(2)                         <-- ---YAB1       <---------CCA1(1)    --------->AHL20(2)--------->AHL20(2)           <---------TOE2(2) ->AHL20(2)   --------->ARR11(3)    <---------AHL20(2)<---------AHL20(2)           <---------TOE1(2) -------->ICU4<---------ARR11(3)<---------AHL20(2)<----------DOF2  <---------AHL20(2)    <-----------RAV1(1) -ICU4  <---------AHL20(2)<---------AHL20(2)<---------AHL20(2)    <---------AHL20(2) <XXXXXXXXXXXXXXX   taaatattaatttatagatatttagtatttacataaaatttaatattaaattctttttaaattttttttttattttagtttttcttatgttttgttgttc  11079000                                                                                    --------->ANAC55(2)                    --------->AHL20(2)                                             <---------TOE1(3)                    <---------AHL20(2)                                  --------->TOE2(2)          <---------YAB1                                                --------->TOE1(2)         --------->AHL20(1)                                           --------->ARR14(2)         <---------AHL20(1)                                           <---------ARR11(3)         <---------AHL20(2)                                           --------->ARR11(3)         --------->AHL20(2)    <----------DOF2         <---------ARR11(3)          <---------TOE2(3)        --------->YAB1       ---------->ID1            <---------AHL20(1)       --------->DOF5.7(2)        --------->AHL20(2)  <-----------GT1            --------->AHL20(1)      --------->TOE2(3)    <---------AHL20(2)  <---------AHL20(2)<---------AHL20(2)          <---------ARR14(2) ------->ARR14(2)  <---------AHL20(1)    <---------AHL20(2)          --------->GLK1(1)   --------->ICU4 --------ARR14(2)  --------->AHL20(1)    --------->AHL20(2)          <---------CCA1(2)   <---------YAB1 -------CCA1(2)    --------->AHL20(2)    <---------AHL20(1)       --------->LBD16 <---------DOF5.7(2) XXXXXMIR863-3P    <---------AHL20(2)   --------->ICU4 --------->ARR11(3)  --------->ANAC46   gtatattcaattatattagaatttattttttttctttttgtaattttttttttgtaagatattgtgtccgtatatctacgacgttaacgtgatgcttaat  11079100                                                                         --------->ANAC58                                                                         --------->ANAC58                  --------->TOE2(3)                                    ---------->DOF2                  --------->YAB1                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------->TOE1(3)                                  <------ZmHOX2a(2)                <---------ARR11(3)                            ----------->HVH21                     -            --------->TOE2(3)                                 <---------YAB1                        -        ------>ZmHOX2a(1)                               --------->AHL20(2)              <------------    <-----------GT1  <<<<<<<<<<<<<<<<<LFY       <-----------GT1    --------->At4g35610  -------------  <---------ICU4--------->ARR11(3)           ----------->GT1<---------ICU4           <---------ANAC55(2)   ctaatttttccttacataaatcttaacaatggtttctcatataaaaaatgttacaaaatcaaatatgacagatcaaagcaaaacattatgtgagtacaaa  11079200                                                                                                  ---                                                                                              <------                                           --------->HSFB2a(2)                                -------                                           <---------HSFB2a(2)                               <-------             <---------ZAT14           <---------ANAC58                                     <--------   --------->YAB1                      <---------ANAC46                                   <---------ICU4  <---------YAB1                  <---------ICU4                                         --------->ICU4 <---------ARR11(3)               --------->YAB1                                         <---------YAB1 --------->ARR11(3)               --------->ATHB51                                     --------->YAB1 -------->RVE1(1)                --------->ICU4---------->DOF2             --------->AHL20(2)-------- -------->CCA1(1)    ---------->DOF2   <---------ANAC58     --------->AHL20(2)        <---------YAB1< ---AtSPL8   --------->ZAT14     <---------ATHB51           <---------AHL20(2)    <----------DOF2<--- -->AtSPL8--------->At4g35610    <---------ATHB12          --------->AHL20(2)     <---------DAG2 ----   aaatatcatatcaactgtactctaaaagagttgcaattatggcttgcagaaaagtttcacataaaattagttttcaaatatatgctttatgattattaat  11079300  Previous    Next  AGI:  At3g29100.1    Description:  VTI13 (vesicle transport v-SNARE 13); SNARE binding / receptor. Identical to Vesicle transport v-SNARE 13 (VTI13) [Arabidopsis Thaliana] (GB:Q9LVP9;GB:Q8GXG5); similar to ATVTI11/ATVTI1A/SGR4/VTI11/VTI1A/ZIG (VESICLE TRANSPORT V-SNARE 11), receptor [Arabidopsis thaliana] (TAIR:AT5G39510.1); similar to vesicle transport v-SNARE 11-like [Solanum tuberosum] (GB:ABB29948.1); similar to unknown [Populus trichocarpa] (GB:ABK92871.1); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) Range:  from: 11077073    to: 11078777    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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