Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               ------>ZmHOX2a(1)           --------->YAB1        --------->YAB1        --------->KAN4(2)                                                                           -       <---------KAN4(1)             --------->AHL20(2)                                      <-------       --------->KAN4(1)--------->At4g35610                                                  <-------      <---------KAN4(2) <---------At4g35610          --------->bZIP60(2)                   <---------AHL20(2)     --------->YAB1<----------DOF2 --------->TOE2(3) --------->ANAC46           ---------->DOF2     -   atatgtagaataatcctaatgctttcagcttaactaaacttaaataagctaatacacatcacaaaactatacaattcagataaaaagcattgtttaatgt  10983100             -------->P                                               --------->YAB1             ----      --------->ANAC58                                               <------ZmHOX2a(2)          <----      --------->ANAC58                                              --------->ARR11(3)          -----    ---------->DOF2                                                 <---------ARR11(3) --------->YAB1 -------->ANAC58                                                   ======================HOX2a_HOX2a --------AtSPL8  <-----------HVH21     --------->At4g35610         <------ZmHOX2a(1)  --------->ICU4 --TOE2(3)   ------->TEIL ---------->DOF2                 --------->DAG2              <---------ATHB12 -------->ANAC58<----------DOF2   --------->WOX13(1)     ---------->DOF2          <------ZmHOX2a(2)   acgagcaaaagcatcaacctttcagataaaaagcatcaatccgatgaaacccaaaaaccaaaagttgaaggatcatactcatcgatcaatgatcagtaat  10983200                        ---------->DOF2                      <---------YAB1                   <---------YAB1                  <---------ARR11(3)      --------->YAB1--------->YAB1 ----------->GT1  --------->ARR11(3) ----->ATHB12    --------->YAB1                           <---------ARR14(2)          --------->TOE1(2) -----YAB1      <---------ATHB12                  --------->MYB52(1)    <----------DOF2 ---->ICU4      --------->ICU4       ---------->DOF2     <------ZmHOX2a(1)  <---------YAB1    -------   gaatggtatcaaaatccaatgatcataaaagaaaatttcaaaagaaaacaaaaaacagaggaatcgatgagcacctttgtgatagagacctgagaaaatc  10983300                                                                    --------->TOE2(3)                            --------->GLK1(2)                     ------->TEIL                           <---------GLK1(2)                   <---------YAB1 -->GLK1(2)        <---------ICU4<----------DOF2        ---------->DOF2   <----------DOF2     -------   caatacaaaaactgagcctattcatttcagaatctctttggagtccaaaatccatatcaaaagtgatgaatcttagctctatggaatcaaattcagattt  10983400                                              --------->ARR11(3)                                              <---------ARR14(3)                                              --------->ARR14(3)                                              --------->ARR14(2)                                              --------->AHL20(1)                                 <---------HSFB2a(1)                                 --------->HSFB2a(1)                                <---------ARR14(2)                                --------->GLK1(2)<XXXXXXXXXXXXXXXXXXXXMIR171A                               --------->GLK1(1) <XXXXXXXXXXXXXXXXXXXXMIR170                       ---------->DOF2        <---------AHL20(1)                    --------->ANAC58                     ----------->HVH21        <---------ARR14(2)                    --------->ANAC46                    --------->TOE1(3)         <---------ARR11(3)                    --------->ANAC58   ---------->DOF2 ----------------->AGL1   ----------->ARR10           <---------ARR11(3)     ------ -->GLK1(1)       --------->MYB52(1)  <---------ETT(2)    <----------DOF2        *TSS  ---------->DOF2   caacacaaagggtctctacatacctgaaagggggaatctttcgaccaagatattgatgtgcttcaattcatgaagaccctaagaacaagcaaagaagatg  10983500                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                    <---------MYB52(1)           <---                                                                   ----------->GT1             <-----                                    <---------YAB1            --------->ZAT18          <---------ZAT14                                  ----------->GT1             --------->ZAT14          --------->REM1(2)    ------------>CBF            <-------GAMYB                 <---------ZAT14          --------->ZAT14   --------->TOE2(3)           <-----------RAV1(1)        --------->ICU4         >>>>>>>>>>>>>>>>>LFY --->CCA1(2)             <---------GLK1(2)               <------------CBF ----------->GT1      <-----   tgagacctcaatctattagtgtatatagagtctctgttgtaattagagtcttagtgagtcattgtgaactggtattttgtataaaccagtgtagatagtg  10983600         <------MYB46(1)         <------MYB83 -----MYB83<----------DOF2 -----MYB46(1) --------MYB46(3)                                                            --------->AHL20(2) -------AtMYB61       <---------TOE2(3)                                      <---------AHL20(2) -----P --------->MYB59                                        ------->TEIL --------->AHL20(2) ----ZAT6----------->GT1              <---------YAB1          <---------CCA1(2) ------RAV1(1)        <---------TOE1(3)           <-----------GT1 <----------DOF2--------->YAB1   ---   ttggtttagttcggtttaatggctatggtttaggcctcttacaattgtatataaaccctcaattgtatcttttatcaaattaatgagaatgacattaact  10983700                                       ----------->RAV1(2)                                       ------>ZmHOX2a(1)                               --------->ANAC58                               --------->ANAC58           >>>>>>>>>ARR1                            <---------STY1(2)           <---------YAB1                            --------->STY1(2)     --------->DAG2                       <------------CBF                           --------->ANAC58      ---------->DOF2                       >>>>>>>>>ARR1                      --------->DAG2   =============HOX2a_HOX2a  --------->HSFB2a(2)   >>>>>>>>>ARR2         ------>ZmHOX2a(2) --------->ANAC58  ------>ZmHOX2a(2)   <---------HSFB2a(2) <---------TOE2(3)         =====================================HOX2a_HOX2a >>>>>>>>>ARR2--------->ZAT6<---------YAB1     <---------YAB1  ---------->DOF2   <---------At4g35610<------------CBF      --------->ZAT6<------ -------->GT1 --------->MYB52(1) <---------ARR11(3)     <---------TOE2(3)      --------->ZAT18-------   tggtaatatgatccattaaccgataaagctagcaagctctcctctgatccaaaaagctaagattgtttcagaaacactaagaacactaagattgtttcag  10983800                                               <---------MYB46(3)                                             <------------CBF                           --------->ANAC46 --------->ATHB12                           --------->ANAC55(1) <-----------RAV1(1)                           --------->ANAC58<---------YAB1                           --------->ANAC58--------->ICU4                                          <-                   <------ZmHOX2a(1)     --------->YAB1            --------->GLK1(2)               <-                  ----------->GT1       <---------YAB1            --------->ARR14(2)             <---           ----------------->AGL1       --------->ICU4   --------->SPL7                          ----       --------->TOE1(1)   <---------ANAC55(2)<---------WOX13(1)  <---------GLK1(2)              <---       --------->TOE2(1)   --------->ANAC55(2)<---------YAB1      <---------ARR14(2)      --------->MYB52(1)  <-----------GT1 <----------ID1      --------->YAB1<---------ANAC46       <---------ANAC58     ----- ---HSFB2a(2)   --------->DAG2       --------->ICU4 <---------ANAC58       <---------ANAC58     <---- -->HSFB2a(2)  ---------->DOF2----------->RAV1(1)   <---------ANAC58       <---------ANAC46    <-----   aaattcacctcggaccaaaaaggataaacacgcaacacgatgatgatgattgttgctcgtacaactcggaatcggtagcgagttcgaaaactaaacgggg  10983900       ----------->HVH21     <---------ANAC58     <---------ANAC58     --------->MYB52(2)    <-------TEIL                 --------->AtMYB61           ------->GAMYB   <---------ARR14(2)           --------->HSFB2a(1)       ----------->RAV1(1)   --------->ARR14(2)           <---------HSFC1(2)      --------->LBD16  <---------MYB52(1)            --------->HSFC1(2)     --------->ANAC58 --------LBD16                  <---------HSFB2a(1)    --------->RAP2.3(2) -----NtERF2--------->O2       ------>MYB46(1)         --------->RAP2.6(2) ------DEAR3(1)                ------>MYB83            --------->ANAC58 ----->ARR14(2)                -------->P     --------->ARR14(2) ------ARR14(2)        <---------YAB1         --------->GLK1(2)     <----------ID1                  - ---->GLK1(1)        --------->YAB1           <---------ARR14(2)   <------ZmHOX2a(1)<---------GLK1(1) -----GLK1(1)   <---------HSFB2a(2)------>MYB46(1)     --------->ANAC46    --------->DAG2   <------ZmHOX2a(1) ----ATERF1(1)  --------->HSFB2a(2)------>MYB83       --------->RAP2.3(1) ---------->DOF2 <---------TOE2(3)   ctccggttcgtgacccgtctcgatgatgagtccaaccttccgatggcgattctgaagccgcaacagagaggagacaaaaagaggcgatttctgaggaaac  10984000  Previous    Next  AGI:  At3g28956.1    Description:  catalytic/ nucleotide binding. similar to catalytic/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G62950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42808.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72759.1); contains InterPro domain HRDC-like; (InterPro:IPR010997); contains InterPro domain RNA polymerase II, Rpb4, core (InterPro:IPR006590) Range:  from: 10981937    to: 10983481    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g28958.1    Description:  plastocyanin-like domain-containing protein. similar to copper ion binding / electron carrier [Arabidopsis thaliana] (TAIR:AT1G45063.1); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) Range:  from: 10983943    to: 10984769    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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