Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <----------DOF2                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                           --------->ARR14(3)                                                      <-                           --------->AGP1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     --                           <---------ARR14(3)          ----------->HVH21                           <-                           --------->ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --                           <---------ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <-                    <---------ZAT6 <---------GLK1(1) ----------->RAV1(2)                    ---------      <---------ZAT14      --------->ARR14(2)  <---------ETT(2)                            --------->AHL20(1)      --------->ZAT14      <---------ARR11(3) <------ZmHOX2a(2)         --------->ZAT14   --------->AHL20(2)      <---------ZAT18    ----------->ARR10 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->AHL20(2)      --------->ZAT18 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     -- -------AHL20(2)   <---------TOE1(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------->DOF2    ----   ttttttagtggacttgttgttagcgttaagatctttgatttcagaccgatcgacaacctgacccattacatctgtatagacaaagagaataaatatatga  10979800                                                                       <---------CCA1(1)          <--                                                                       <---------RVE1(1)        <----                                                                      <---------AHL20(1)  --------->LBD16                                                                      <---------ARR11(3)------>ZmHOX2a(2)                                                                      --------->ARR11(3)=============    <-----------GT1                                                 --------->ANAC58   ============== --------AHL20(1)                                                   --------->ANAC58   <------ZmHOX2a(2) ------->AHL20(1)                                               --------->ANAC58      --------->ARR14(2) --------AHL20(2)                                               --------->ANAC58      <---------ARR14(2) ------->ARR11(3)                                               --------->AtLEC2     <---------ARR14(1) --------ARR11(3)           ------->TEIL                   --------->MYB52(1)     --------->At4g35610 >CCA1(2)               ------->TEIL ----------->GT1     <---------MYB52(2)       <---------LBD16---- ------->AHL20(2)      <---------AtLEC2                 <---------At4g35610       <---------At4g35610 --->TEIL        --------->ARR11(3)---------->DOF2      --------->At4g35610      --------->MYB52(1)   atatattgactatataagagataatgcatgtatgttcaaaagtaaaatgaaaacttgaagctaaccatgcaagatatttgagttagcggatccagagagg  10979900 --------->ANAC46 --------->ANAC55(2) <---------ANAC55(2) --------->TGA1a --------->ANAC58 --------->O2 =====================================bZIP_DOF <---------O2 <---------TGA1a <---------bZIP60(1) --------->bZIP60(1) --------->ANAC58 ----ZmHOX2a(2)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --ZmHOX2a(1)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ==HOX2a_HOX2a                           ----------->GT1 ==HOX2a_HOX2a                        --------->MYB52(1) ----->ARR11(3)            ---------->DOF2  <-----------HVH21                                 -------   atcacgtcaaacttagcaagtgagagaaacaaagcatcgaaaacggtatcacatggagagaccgtggttttgaaaacaaaaccaattttgtatttcaagt  10980000                                                 ------>ZmHOX2a(2)      ------->TEIL                                               <---------ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                               --------->ARR11(3)    --------->ANAC58        --------                                              --------->YAB1         --------->ANAC58      ==========                                      <-------GAMYB                ---------->DOF2       --------->ARR14(2)                                    <---------AtMYB61             <---------MYB52(1)  --------->HSFB2a(2)                        --------->ATHB12     --------->ICU4      <-------GAMYB        <---------HSFB2a(2)     --------->ANAC46  <---------YAB1<---------MYB46(3)  <---------ALFIN1  <----------DOF2 ------>ZmHOX2a(2) -->ANAC46  --------->ANAC46        <---------YAB1      --------->MYB46(3)<---------DAG2 <---------ARR14(2)   cagaaatacgatactggccacttgtatgatttagagtgatggttgtaatgatcttccaaacaccctcggttaagcacctttcaatcttctcgatctgctc  10980100                                                             --------->CCA1(2)                                                         --------->AHL20(2)                                                        --------->AHL20(2)                                                        <---------AHL20(2)                                                       <---------YAB1                                                       --------->ICU4                                                     <--------HAHB4                                                     -------->HAHB4                                                     --------->ATHB51                                                     --------->YAB1        <---------WOX13(1)                                                     <--------ATHB1       <------------CBF                       <-----------GT1              --------->ICU4       --------->ATHB12               <xxxxxxxxxxxxxxxxsmallRNA(i)         --------->AHL20(2)  *TSS         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------YAB1      <---------YAB1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------ATHB51    --------->ICU4        <------ZmHOX2a(1)                         --------->YAB1      --------->YAB1                -     xxxxxxxxxxxxxxxx>smallRNA(i)         <---------AHL20(2)<---------AHL20(2)                      -     <-----------RAV1(2)                 <---------AHL20(2) --------->AHL20(1)               <xxxxxxx ->At4g35610  <-------TEIL               --------->AHL20(2) <---------AHL20(1)    --------->ANAC46<-- ==============HOX2a_HOX2a             --------->YAB1<---------ICU4  --------->ICU4      <---------TOE2(3)   tcttctcacaggagcatacatcttatcaccctatatgacaaaaataaatgaataataattaatatatgaaaatgatgattgaacacactataaggctgga  10980200                                                                    <----------DOF2                                                                   --------->TOE2(3)                                                                   --------->TOE1(3)                                                                 -------->P   --------->KAN4(2)                                                                 ------>MYB46(1)                                                                 ------>MYB83<---------KAN4(1)                                                               <---------MYB55(2)                                                               <---------MYB111(1)       ----------->GT1                                         --------->DEAR3(1)               <xxxx    <-----------GT1       <-------TEIL                         --------->MYB46(3)              ------   --------->ARR11(3)   --------->TOE1(2)                      --------->AtMYB61               ------   --------->AHL20(1) <---------------AtSPL8                   <---------MYB46(2)         --------->YAB1 ----->MYB83          --------------->AtSPL8                   <---------MYB111(2)       <---------ATHB12 ----->MYB46(1)       --------------->AtSPL3                  --------->MYB46(3)    ------>NtERF2   - xxxxxxxxxxxxxxxxsmallRNA(fl3)                <---------ICU4<-----------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------MYB59     ----------->TBP --------->TOE2(3)      --------->ARR14(2)<---------GLK1(2) --------   ccaaatatactgtttaaactataaaacgtacaacttcattaactaaaatcatttcgatggattcaccaacctttacagaatattgcctccaaacatgaag  10980300                                                                                  <---------AHL20(2)             --------->ANAC46                                                 --------->ATHB12             --------->ANAC58                                              --------->YAB1          --------->ARR14(2)                                             --------->ANAC58      --------->TOE2(3)                                                  --------->ANAC58      --------->TOE1(3)                                                <---------ANAC46   <-----------GT1                                                     <---------ANAC58 xxxxxxxxxxxxxxxxsmallRNA(se3)                                         <---------ANAC58 --->ANAC58  --------->ANAC58                                     --------->ARR14(2) --->ANAC58  <----------ID1      <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    -------- ---------------------->TaNAC69(2)  <---------WRKY18(1)          <------ZmHOX2a(1)--------->AHL20(2) -->DOF2  <---------ARR14(2)     <---------ANAC58  ----------->GT1<---------ARR14(2)    --------->AHL20(2)   caatttaacctgaatacgccaagcgttcttgtaaggcttgagcgatttcaagggagtaaatggaagaggattggcgagcatcatttaaaaaaaaatcaaa  10980400                                                               --------->YAB1                                                            <---------AHL20(2)<------MYB46(1)                                                            --------->YAB1    <------MYB83                                                       <---------MYB52(1)     ----------->GT1                                                    --------->SPL7           --------->MYB59  -------              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------NtERF2             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------At4g35610                      <-----------HVH21          --------->MYB46(2)  ----         --------->At4g35610                      <---------SPL7           <---------MYB52(1)--------   --------->CCA1(2)                             <---------ANAC58        <---------MYB46(3) <--------  <---------ARR11(3)                             <---------ANAC58 --------->YAB1         --------->CCA1(2)  --------->ARR14(2)                            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(2) ->YAB1 ------->TEIL                  <---------WOX13(1)<---------RVE1(1)<XXXXXXXXXXXXXXXXXXXXMIR3440B-5P   actagatatgaagctgtatgagtctaagatgagtgagtagattgaaatgaggcgtccgatatttataagaataagtggttaggtcaaaaaaatatgcgca  10980500           <---------ANAC46    <---------YAB1    <---------AHL20(2)                                                             --------->ALFIN1  <---------CCA1(1)                                <---------ICU4               --------->DAG2  <---------RVE1(1)                                --------->YAB1              ---------->DOF2 --------->AHL20(1)                                -------->HAHB4             <xxxxxxxxxxxxxxxxxxxxxx --------->ARR11(3)                             <---------ICU4                <xxxxxxxxxxxxxxxxxxxxxx <---------ARR11(3)                             <--------HAHB4              --------->LBD16 -->LBD16<---------ANAC58                      --------->ICU4              <---------ANAC55(2) ------>DOF2                     <---------CCA1(2)<---------YAB1           --------->ANAC55(2) ->ANAC46<---------ANAC58   <-----------GT1    <---------YAB1              <---------ANAC46 -LBD16<---------YAB1      --------->KAN4(2) --------->YAB1               <---------LBD16 ------->TEIL   aaagatattattcgtgtggaattcaagtttattccatatcacaaatctcataattatagcaaaatgtttagcattttccgtaaaagtggatgtatatagg  10980600                                          --------->ANAC58                                          --------->ANAC58                                    --------->CCA1(2)                    ----------->GT1                                    <------ZmHOX2a(2)            <---------ICU4                                   <---------ARR14(2)            -------->HAHB4                                   <---------ARR11(3)           --------->ICU4                                   --------->ARR11(3)           <---------ATHB51      --------->HSFB2a(2)          --------->ARR14(2)           <---------YAB1      <---------HSFB2a(2)   ---------->DOF2                   <--------HAHB4    <---------AHL20(2)  <---------ANAC58        <---------HSFB2a(2)                 --------->YAB1   <---------AHL20(1)  <---------ANAC58       ----------------->AGL3              <---------YAB1    <---------ARR11(3) xsmallRNA(si3)    --------->ARR11(3)     --------->ANAC46   --------->ICU4    --------->ARR11(3) xsmallRNA(le3)    <---------ARR11(3)   --------->MYB52(1) <----------DOF2     --------->AHL20(1)   -   gaatacttgtggaaaatgtaagataattccaaaagaagatccaaacgaaatattagatgtgctataattatggagaagtgatatatttgaaggcagaaaa  10980700  Previous    Next  AGI:  At3g28955.1    Description:  transposable element gene. pseudogene, hypothetical protein, contains similarity to many putative replication proteins, A1 Range:  from: 10979305    to: 10980172    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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