Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     ------>ZmHOX2a(1)  <---------------AGL15  --------->TOE2(3)  --------------->AGL15 <-----------------AGL1 ----------------->AGL2 <-----------------AGL2 <-----------------AGL3 ----------------->AGL1                                          <----------DOF2 ------>KAN4(2)                                                ------->GAMYB ------HSFB2a(1)                                          ------->GAMYB ----->KAN4(1)                                  --------->HSFB2a(1) ------KAN4(1)                                  <---------HSFC1(2) ----->HSFC1(2)                                 <---------HSFB2a(1)                       <---------TOE2(3) -------TaMYB80                              <------NtERF2--------->MYB46(3)        --------->ATHB12 ----->HSFB2a(1)                            --------->LBD16    xxxxxxxxxxxxxxxx>smallRNA(s)  -------- ------HSFC1(2)                           <---------LBD16 <---------MYB55(2)       <---------ATHB12 -----KAN4(2)                            <---------At4g35610--------->MYB52(1) --------->ZAT14 ----->TaMYB80                           --------->At4g35610------>MYB46(1)    --------->ZAT18 ->LBD16                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------>MYB83       <---------ZAT18     <- >ANAC46   --------->PCF2                <---------ZAT2  --------->ANAC46 ---------->DOF2 <---------TOE1(3)   tattccttatttggacccatacttctatgaattggaggtagtcagccggagggttctcaacccaacgctctatggctaaagtccactcattgaaggtatg  10976800                                --------->ANAC46                          ------>ZmHOX2a(2)                         <------ZmHOX2a(2)                        <---------ARR14(2)                        <---------AGP1                        --------->AGP1                                                  <xxxxxxxxxxxx                        --------->ARR14(2)                                              <xxxxxxxxxxxx                        <-----------ARR10                                             xxxxxxxxxxxxxxx                        --------->ARR11(3)                                    ------>ZmHOX2a(1)                        <---------ARR11(3)                                <---------ARR14(2)       <x             <---------GLK1(1) <---------------AGL15                      --------->ARR14(2)     <---    <----------DOF2----------->RAV1(1)                                   --------->GLK1(1)   -------- ->CCA1(2)   --------->GLK1(1) --------------->AGL15             ---------->DOF2 xxxxxxxxxxxxxxxxxxxx --------ALFIN1    --------->MYB52(1)          --------->At4g35610     xxxxxxxxxxxxxxxxxx>smallRNA(si3)   aacaccctttgctagaattcccaacagatcttactcgtaagagaaaatgaactgaaacctctcattagaaagcgcaattcctcttaccctctcactgatt  10976900                  --------->HSFB2a(2)                 <---------LBD16               --------->GLK1(2)              <---------GLK1(2)              --------->ARR11(3)              --------->ARR14(2)              <---------ARR14(2)                                      ------>MYB83             --------->HSFC1(2)                                       ------>MYB46(1)             <---------HSFB2a(1)                                    <---------MYB55(2)             <---------HSFC1(2)                                     <---------MYB46(2)             --------->HSFB2a(1)                                    <---------MYB111(2)            <---------KAN4(2)                                       --------->AtMYB61           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    --------->MYB46(3)       --------->LBD16                                              <---------MYB111(1)       ------>ZmHOX2a(1)                                           --------->ANAC58      <---------LBD16                                              --------->ANAC46      --------->TOE1(2)                                            --------->ANAC58     ----------->RAV1(2)                                          ------>MYB46(1) xxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxsmallRNA(fl3)        <---------ARR11(3)               ------>MYB83 xxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(i)          <---------MYB55(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    ----------->HVH21    --------->ANAC46                        - --------GT1----------->ARR10    --------->ARR11(3)         --------->ANAC58    <---------GLK1(2)   < ->ATHB12 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <-------TEIL--------->MYB46(3)      --------->ZAT6 xxx>smallRNA(le3)<---------HSFB2a(2)--------->At4g35610    --------->ANAC58 <---------ALFIN1 <<<<<<<ZML2   tgccatttcctgggaagattctggatgagattggacatcttctgactgtttgggttcagaacacgacccaccaaactcaacacattcttctcactagaac  10977000                                                                                               ------                                                                                              <------ZmHOX2a(2)              --------->LBD16                                                                <-------             --------->ANAC46                                                                --------            <---------LBD16                                                                  <-------          <---------ARR14(2)                   <------ZmHOX2a(1)                             ------->TEIL          --------->ARR14(2)          ------>ZmHOX2a(1)                        ----------->HVH21         <---------GLK1(1)            =====================================HOX2a_HOX2a       --------        >>>>>>>>>GT-1    --------->ANAC46==================================HOX2a_HOX2a   >>>>>>>>>MYB98     ----------->GT1   <---------DOF5.7(2)     ============================HOX2a_HOX2a  <-----------GT1     <XXXXXXXXXXXXXXXXXXXXMIR862-3P  <---------ALFIN1                        <---------ZAT2  <-------    <---------TOE2(3)--------->DOF5.7(2) ------>ZmHOX2a(1)                   <---------At4g35610   <-----------RAV1(2)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      --------->At4g35610 -------->GLK1(1) <------NtERF2    ------>ZmHOX2a(1)                <------ZmHOX2a(2)   --------->MYB52(1) ---------GLK1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ---------->DOF2   --------->ZAT2 <--------   agaattcaggtaaatccggcatcgtaaacggctcatcctcctcctctaaggacattgccattaaagcccgatcgatgctagctgacatagtaacggatct  10977100                                                                                                    <                                                                                                   --      <---------HSFB2a(2)                                                                         ---      <---------HSFC1(1)                                                                          ---      --------->HSFC1(1)                                                                          <--      --------->HSFB2a(2)                                                                         --- <---------HSFC1(2)                                                                            <----- >ZmHOX2a(2)                                                                                  ------- --ARR11(3)                                             --------->MYB52(1)                ----------- ->ARR11(3)                                   --------->At4g35610                         <------MYB46(1) --AGP1                                    --------->At4g35610                            <------MYB83 ->ARR14(2)                                <---------ZAT2                           *TSS --------->MYB59 --ARR14(2)                                --------->ZAT2                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -ARR14(1)               ----------->GT1   <---------At4g35610     <----------DOF2  ---------->DOF2--   tgaaacttcgagaaaaacagcgagaaacagtttaaaacaaaccctagctgatgaagagaaacggcttagcttttgaagattaaactgaaagtaggttaaa  10977200 -------TEIL  --------->ANAC58 ------->ARR14(1)                                                                                  -- ------>ARR11(1)                                                                                 ---- ------>ARR14(2)                                                                                 <--- -------ARR14(2)                                                                       ---------->DOF2 ------>ARR11(3)                                                                     <xxxxxxxxxxxxxxx ----TOE2(3)  --------->ANAC58                                                      ----------------- --->DOF2   ---------->DOF2                           --------->ARR14(2)   --------->ARR11(3)    <--- >GT1      <------ZmHOX2a(1)       xxxxxxxxxxxxxxxx>smallRNA(i)     ---------->DOF2 ----------------- ------->CCA1(2)             ---------->DOF2          <---------ARR14(2)   <---------ARR11(3)    ----   gatacggctaagaggaaagaaacaccacgactaaagctctattccacttagaagcgaatactctaagagagaaagaaggtcttaagcccaaaagagggaa  10977300 --------->GT1 ----->At4g35610                                                                              <------ ------ZAT2          <---------At4g35610                  <---------AHL20(2)      ----------->GT1 xsmallRNA(s)        --------->ZAT2                      --------->YAB1       --------->AHL20(2) >AGL2               <---------ZAT2                <---------ARR11(3)         <---------AHL20(2) ------At4g35610     --------->At4g35610           --------->ARR11(3)      --------->YAB1     ------- >AGL1              --------->GLK1(2)            <---------AHL20(2)       <---------YAB1     -------- ----->ZAT2---------->DOF2                      --------->AHL20(2)    <----------DOF2<-----------GT1-   gctgaaaattttcaaaagagggaagctggtcagttttatgttttcttatataaaatctataatattagtaggctttatgataaattgttactacaaccac  10977400                         ----------->RAV1(2)                     --------->ANAC58                --------->LBD16                <------NtERF2                                            ----------->RAV1(1)        --------->ATHB51------->TEIL                               --------->TOE1(3)  --------->ANAC46   --------->ANAC46                              --------->TOE2(3)  --------->ANAC58   --------->ANAC58                          --------->GLK1(1)  --------->ANAC58 ---------->DOF2                            --------->ARR11(3) ---ALFIN1     --------->ANAC46                  --------->DAG2--------->CCA1(2) -->AtMYB61    --------->ANAC58                 ---------->DOF2<---------GLK1(1) ->MYB46(3)   <---------LBD16              --------->YAB1     <---------ARR11(3) -------->LBD16--------->ANAC58      ------->GAMYB            --------->ARR14(2) --------->YAB1   ---   tccgaagcaactattgcccgcaaacgcacctgtttccaactgaaatcagaaaaagtgccaacaagatatccataacaacacaaacaaaatcacatagaag  10977500                                                                                <---------ZAT2                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                     <---------TOE2(3)                                                                     <---------YAB1                                                                     ----------->ARR10                                        <----------DOF2              <---------TOE1(3)                                    ------>MYB83                 --------->At4g35610               --                 ----------->RAV1(1)------>MYB46(1)              <---------At4g35610               -- ------>GLK1(2) --------->MYB46(3) <---------ALFIN1           <---------At4g35610            <-------   actctgtttcaagttccaacaacacattattcaaaacccactctttacttactcacttactctcttctgctaagattagccaagctcatcaagaattaat  10977600                 ------>ZmHOX2a(2)               <---------ARR11(3)               --------->ARR11(3)              --------->YAB1              -------->HAHB4             <---------YAB1             --------->ICU4           -------->HAHB4           --------->YAB1                                                                          <-          --------->ICU4                                                                  ------->TEIL        --------->YAB1                                                                 --------->ANAC58      <<<<<<<<<<GATA-1                                                                 --------->ANAC58 ----------->TGA1===================HOX2a_HOX2a                                        --------->ANAC46 ----------->HVH21                                                                    --------->LBD16 ------->At4g35610           ------>ZmHOX2a(1)                               ---------->DOF2      --- --------->RAV1(2) ------>ZmHOX2a(1)                    ---------->ID1     <---------HSFB2a(2)    --- --AHL20(2)<---------ICU4 <---------ATERF1(1)    <---------GLK1(2)         --------->HSFB2a(2)  <----   cccctgacgataataatgatcctacagcctcctccatgctcttcccatttggattcttgttccattccaacatttttctaaaagtctccacgaatttctc  10977700  Previous    Next  AGI:  At3g28945.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 2.5e-29 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 10971510    to: 10977184    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g28950.1    Description:  avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related. similar to avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative [Arabidopsis thaliana] (TAIR:AT3G28940.1); similar to avirulence-responsive protein-related protein [Brassica rapa] (GB:ABV89638.1); contains InterPro domain Butirosin biosynthesis, BtrG-like (InterPro:IPR013024); contains InterPro domain AIG2-like (InterPro:IPR009288) Range:  from: 10977345    to: 10978729    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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